LOCUS AK005812 889 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus adult male testis cDNA, RIKEN full-length enriched
library, clone:1700010B09 product:unclassifiable, full insert
sequence.
ACCESSION AK005812
VERSION AK005812.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 889)
AUTHORS Adachi,J., Aizawa,K., Akahira,S., Akimura,T., Arai,A., Aono,H.,
Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Fukunishi,Y.,
Furuno,M., Hanagaki,T., Hara,A., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Izawa,M.,
Kasukawa,T., Kato,H., Kawai,J., Kojima,Y., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Nishi,K.,
Nomura,K., Numazaki,R., Ohno,M., Okazaki,Y., Okido,T., Owa,C.,
Saito,H., Saito,R., Sakai,C., Sakai,K., Sano,H., Sasaki,D.,
Shibata,K., Shibata,Y., Shinagawa,A., Shiraki,T., Sogabe,Y.,
Suzuki,H., Tagami,M., Tagawa,A., Takahashi,F., Tanaka,T.,
Tejima,Y., Toya,T., Yamamura,T., Yasunishi,A., Yoshida,K.,
Yoshino,M., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (10-JUL-2000)
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=1700010B09
FEATURES Location/Qualifiers
source 1..889
/clone="1700010B09"
/db_xref="FANTOM_DB:1700010B09"
/db_xref="MGI:1901467"
/db_xref="taxon:10090"
/dev_stage="adult"
/mol_type="mRNA"
/note="clone_lib: RIKEN full-length enriched mouse cDNA
library"
/organism="Mus musculus"
/sex="male"
/strain="C57BL/6J"
/tissue_type="testis"
misc_feature 1..889
/note="putative"
/note="unclassifiable"
BASE COUNT 167 a 286 c 268 g 168 t
ORIGIN
1 gggcgggaag tctgagtcag caggcacccg ttacgtgtca gactccggtt ccttgtcccg
61 cgtggaaaac caaactaaac ctgcatcgga cgagcgatcc ggagacggga tgccagggtg
121 atggaggaca gaagggtggg cagtggaaga agaccttagc gacctctgtt ctctcgcccc
181 tacttgcagg ctccagctct caggggcccc ggagctgaga gtgtagctta gcgtggacgc
241 agtccctggc ttcgatcccg gggcgcagag gtggagaaga cacctccaaa taggcactca
301 cctgcggccg cgaccgccgc gggactgctc tgcgctgagg gcggcttcat ggagaagttg
361 ctcagtgaca cgcgtagcag agatgctgcg aggtgttggc cctggtggct gccgcctgca
421 ctgcagtctg ctccggtgcc tctgccttgc tccttgccga gcctgagcgc tagctactcg
481 cctgagccgc gccacccgcc ggctactccg tcttatagcc accggcaggg gcggggcggg
541 gcggggctgc tgagtaagtc ccagacgacc taggggacgc ccctgtccct ccacccccta
601 ctcccggcac cgccctagcc acgcgctggc ctctgaagaa ccgcagtgac gggtgtcgac
661 ggagtccagg ataccgcccc aaatatttac ccgccgcttt ctctaccacc ctgacaaccc
721 gacccaggga agtgtctttg cgggcatcag agttctccaa gagtttaccc tgtttcccgc
781 cttctggctg agcctccttg agcctcatct atgaaatgga actgcacatg cagaaagcct
841 ccttgtttgc tgcaaaaata aaggagccaa gggcctcagt agcctctgc
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