LOCUS AJFE02111223 2700 bp DNA linear PRI 18-AUG-2015 DEFINITION Pan paniscus isolate Ulindi cntg111365, whole genome shotgun sequence. ACCESSION AJFE02111223 AJFE02000000 VERSION AJFE02111223.1 DBLINK BioProject: PRJNA49285 BioSample: SAMEA1029457 KEYWORDS WGS. SOURCE Pan paniscus (pygmy chimpanzee) ORGANISM Pan paniscus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan. REFERENCE 1 (bases 1 to 2700) AUTHORS Prufer,K., Munch,K., Hellmann,I., Akagi,K., Miller,J.R., Walenz,B., Koren,S., Sutton,G., Kodira,C., Winer,R., Knight,J.R., Mullikin,J.C., Meader,S.J., Ponting,C.P., Lunter,G., Higashino,S., Hobolth,A., Dutheil,J., Karakoc,E., Alkan,C., Sajjadian,S., Catacchio,C.R., Ventura,M., Marques-Bonet,T., Eichler,E.E., Andre,C., Atencia,R., Mugisha,L., Junhold,J., Patterson,N., Siebauer,M., Good,J.M., Fischer,A., Ptak,S.E., Lachmann,M., Symer,D.E., Mailund,T., Schierup,M.H., Andres,A.M., Kelso,J. and Paabo,S. TITLE The bonobo genome compared with the chimpanzee and human genomes JOURNAL Nature 486 (7404), 527-531 (2012) PUBMED 22722832 REFERENCE 2 (bases 1 to 2700) AUTHORS Pruefer,K., Munch,K., Hellmann,I., Akagi,K., Miller,J.R., Walenz,B., Koren,S., Sutton,G., Kodira,C., Winer,R., Knight,J.R., Mullikin,J.C., Meader,S.J., Ponting,C.P., Lunter,G., Higashino,S., Hobolth,A., Dutheil,J., Karakoc,E., Alkan,C., Sajjadian,S., Catacchio,C.R., Ventura,M., Marques-Bonet,T., Eichler,E.E., Andre,C., Atencia,R., Mugisha,L., Patterson,N., Siebauer,M., Good,J.M., Fischer,A., Ptak,S.E., Lachmann,M., Symer,D.E., Mailund,T., Schierup,M.H., Andres,A.M., Kelso,J. and Paabo,S. TITLE Direct Submission JOURNAL Submitted (06-MAR-2012) Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, Leipzig 04103, Germany REFERENCE 3 (bases 1 to 2700) AUTHORS Pruefer,K., Munch,K., Hellmann,I., Akagi,K., Miller,J.R., Walenz,B., Koren,S., Sutton,G., Kodira,C., Knight,J.R., Mullikin,J.C., Meader,S.J., Ponting,C.P., Lunter,G., Higashino,S., Hobolth,A., Dutheil,J., Karakoc,E., Alkan,C., Sajjadian,S., Catacchio,C.R., Ventura,M., Marques-Bonet,T., Eichler,E.E., Andre,C., Atencia,R., Mugisha,L., Patterson,N., Siebauer,M., Good,J.M., Fischer,A., Ptak,S.E., Lachmann,M., Symer,D.E., Mailund,T., Schierup,M.H., Andres,A., Kelso,J. and Paabo,S. TITLE Direct Submission JOURNAL Submitted (15-JUL-2015) Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, Leipzig 04103, Germany COMMENT The reads of this assembly are deposited under BioProject PRJEB2481. The mitochondrial sequence is GenBank Accession Number KT153251. ##Genome-Assembly-Data-START## Assembly Method :: Celera Assembler v. 5.4.3 Assembly Name :: panpan1.1 Genome Coverage :: 26x Sequencing Technology :: 454 GS FLX; 454 GS FLX Titanium ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..2700 /organism="Pan paniscus" /mol_type="genomic DNA" /submitter_seqid="cntg111365" /isolate="Ulindi" /db_xref="taxon:9597" /sex="female" /geo_loc_name="Germany" BASE COUNT 668 a 571 c 679 g 782 t ORIGIN 1 gcctgtagtc ccagctactc gggaggctga ggcaggagaa tggtgtgaac tcgggaggca 61 gagcttgcgg tgagctgaga tctcactgct gcactccagc ctgggcgaga gagcaagact 121 ccatctcaaa aaaaaaaaaa aatttaagca tggtggtgtg cacctgtagt cccagctact 181 taggaggctg aggtgggagg attgcttgaa tccgggagca ccactgcact ccagcctggg 241 tgacagagcg agaccctgtc tcaaacaaca aacagaccaa tagaagagtc ttgagatgtg 301 taaacactga tgggaaaggg aagaaagaga aagaggctga agtaacagaa gtaaatagat 361 atgaaagacc tttgtgacct ctcaagtgct gtgcaaaatt agtaatttat tcttccttca 421 gagtcaagag gctctttggc ccaatgttat gcgagtagag ggcacttagg agtagttggg 481 gtgttgaata ttcagaagag cagagaggat ttgagagcag ctgcagggtc aggtggagct 541 agccacatgc gtggtggcca cacagagggt ctcctgccct gggggcctgt ggtggttcag 601 agcttctact gtgatagaat gattaagact tgaataggcc agatcctgct gtgtaaaaca 661 gttcgtcatg tagaaagcat ttttgggtct ctgaagtagc cgtgctttat tgatacagtt 721 agcagaaatc tgctgaacag aattcagaat gtgaagacca taaattcatt ttgacgaatg 781 gcatccctcg gaacatgcat aattggggtt ttctctcccg gcatttgagg gtcagtgttt 841 agtggggaca tccagctccc cctgcaggtt ggtatcccgc aaggttcagt tctttgccaa 901 gcactcgcta tggggacatc agttataaat aaacaaaacg ctcgccggaa cgttatggtc 961 atcctgccca ggcaggctcc cagctttctg atggatatca gacactagcc ctggcctcac 1021 agtatggtgg ttctgaacac tgatggtatt taagcactct gtgttttgct cctgttcacc 1081 caggagtact agtgaaagat ggctgaacag agcagtgtat tttggtgaga gggaaattgc 1141 acatggatgg aaagtttgcc aaacccaggt gattgagcag acggctttct tcctctcttt 1201 tttttttttg tagatggagt cttgctctgt tgtcaggctg gagtgcagtg gtgcgatctt 1261 ggctctctgc aaccactgcc tcctgggttc aagcgattct cctgcctcag cctcctgagt 1321 agctgggatt acaggcatgc gccaccacgc ccggctagtt tttgtatttt tagtagagac 1381 ggagtttcac catgttggcc aggatggtct tgatctcttg accccgtgat ccaccctcct 1441 tggcctccca aagttctggg attacaggcg tgagcgactg cacccggccg acagctttct 1501 tcttaaatct ttggaggctt ccactcctcc agcagagaca gctgaactag atatccagtc 1561 ttatgatggt gatgaatagg ttttactaac agaaatttat tttaaggtaa gatttttcca 1621 gaaggcaact agttagtaga attcatctat tcaaagcaat aaaaacttcc tgaggaccta 1681 ttgtatatca gttcttgggc tagatgctag agaaacagat ataaattcaa taccatctct 1741 gtcctctggg aacttactgt tcaggtagaa tttcccaaaa tgtattttgg aaatcctggg 1801 tacatgaaat tccttggtca agtaagttta aaggatattg ctttgtttta tcgtcagtct 1861 tcttagagat tctcattgta tacgagtata tcatggttct gagaagttct gtggtaaagt 1921 tctcgttata tgtttaatcc agtgtttctc aaatttatgt cacacacaag ctcagggtat 1981 gtgtgtgaca tttctttttt ttttttgaga cagagtctag ctctgtcgcc cacgctagag 2041 tgcagtggcg caatcttggc tcactgcaag ctctgcctcc caggttcacg ccattctcct 2101 gcctcagcct ccctagtagc tgggactata ggcacccgcc accatgcccg gctaattttt 2161 tgtattatta gtagagacgg ggtttcaccg tgtcagccag gatggtcttg atctcttgac 2221 ctcatgatcc tcccgccttg gcctcccaaa gtgctgggat tacaggcgtg agccaccacg 2281 cccggccaaa ttttatttaa ctttaattaa tttaaattta aataaccata tggggctagt 2341 gatttctgta ttgggtaggg cagctttgga agctagtttg agacatgctg agctaaaggt 2401 gtttttattt attcattcta caaacatcaa gtttgtggtg gtcactgagt aaaagcatcc 2461 ttgtcctcaa ggagcttcta atttagtggg gactgcaggc acccgccgtg taatgatgag 2521 ccttaggtga ttacttggag cacagaggaa gggtttcagc tttgtggggg aggttggggt 2581 tgatcaggga aggtgtcctg gatgggtcct agggagtaag ttctggagaa caaataagag 2641 tttgtacagt aaaacttact ctttccttct ttccttcttc tttccttcct tccttccttc //