LOCUS AJ717580 2798 bp DNA circular VRL 14-SEP-2006 DEFINITION East African cassava mosaic Kenya virus segment DNA A, complete sequence, isolate EACMKV-[K300]. ACCESSION AJ717580 VERSION AJ717580.1 KEYWORDS AC1 gene; AC1 protein; AC2 gene; AC2 protein; AC3 gene; AC3 protein; AC4 gene; AC4 protein; AV1 gene; AV1 protein; AV2 gene; AV2 protein. SOURCE East African cassava mosaic Kenya virus ORGANISM East African cassava mosaic Kenya virus Viruses; Geminiviridae; Begomovirus. REFERENCE 1 (bases 1 to 2798) AUTHORS Bull S.E. JOURNAL Submitted (19-MAY-2004) to the INSDC. Bull S.E., Department of Disease & Stress Biology, John Innes Centre, Colney Lane, Norwich, Norfolk, NR4 7UH, UNITED KINGDOM. REFERENCE 2 AUTHORS Bull S.E. TITLE Diversity of cassava-infecting geminiviruses in Kenya JOURNAL Thesis (2005), MSc (Research), University of East Anglia, Norwich, UK. REFERENCE 3 AUTHORS Bull S.E., Briddon R.W., Sserubombwe W.S., Ngugi K., Markham P.G., Stanley J. TITLE Genetic diversity and phylogeography of cassava mosaic viruses in Kenya JOURNAL J. Gen. Virol. 87(Pt 10), 3053-3065(2006). PUBMED 16963765 FEATURES Location/Qualifiers source 1..2798 /organism="East African cassava mosaic Kenya virus" /segment="DNA A" /host="Manihot esculenta" /isolate="EACMKV-[K300]" /mol_type="genomic DNA" /geo_loc_name="Kenya:Machakos, Kathiana/Kakuyuni" /clone="K300FA-2[2002]" /db_xref="taxon:393599" CDS 174..530 /codon_start=1 /gene="AV2" /product="AV2 protein" /db_xref="GOA:Q2A898" /db_xref="InterPro:IPR002511" /db_xref="InterPro:IPR005159" /db_xref="UniProtKB/TrEMBL:Q2A898" /protein_id="CAJ78322.1" /translation="MWDPLLNDFPETVHGFRSMLAVKYLLHLEQEYDRGTVGAEYIRD LIGVLRCKSYVEATRRYNNLNTRIQGAEEAELRQPIHEPCCCPHCPRHQKQNMGQQAH VSEAQDVQNVSKPRCP" CDS 334..1107 /codon_start=1 /gene="AV1" /product="AV1 protein" /db_xref="GOA:Q2A897" /db_xref="InterPro:IPR000263" /db_xref="InterPro:IPR000650" /db_xref="UniProtKB/TrEMBL:Q2A897" /protein_id="CAJ78323.1" /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTNRVVAPTVRVTRSKIW ANRPMYRKPKMYRMYRSPDVPKGCEGPCKVQSYEQRDDVKHTGMVRCVSDVTRGSGIT HRVGKRFCVKSIYILGKIWMDENIRKQNHTNHVMFFLVRDRRPYGPSPQDFGQVFNMF DNEPTTATVKNDLRDRYQVLRKFHATVVGGPSGMKEQALVKRFFRINNHVVYNHQEQA KYENHTENALLLYMACTHASNPVYATLKIRIYFYDAVTN" CDS complement(1104..1508) /codon_start=1 /gene="AC3" /product="AC3 protein" /db_xref="GOA:Q2A896" /db_xref="InterPro:IPR000657" /db_xref="UniProtKB/TrEMBL:Q2A896" /protein_id="CAJ78324.1" /translation="MDSRTGELITAPQAKNGVFTWEITNPLYFDITNHDKRPGNMNHD IITLQIRFNHNIRKALGIHKCFLNFKVWTTLRPQTGRFLRVFRYQMLQYLDMIGVISI NTVLQAVDHVLYDVLLNTIQVTEQHAIKFNLY" CDS complement(1249..1656) /codon_start=1 /gene="AC2" /product="AC2 protein" /db_xref="GOA:Q2A895" /db_xref="InterPro:IPR000942" /db_xref="UniProtKB/TrEMBL:Q2A895" /protein_id="CAJ78325.1" /translation="MPPSSPSTSHCSQVPIKVQHRTAKTRAVRRRRVDLECGCSFYLH IDCINHGFSHRGTHHCASSKEWRFYLGNNKSPLFRHHQPRQETREHEPRHHHTPDTVQ PQHPEGIGDSQVFSQLQGLDDLTASDWSFLKSL" CDS complement(1565..2644) /codon_start=1 /gene="AC1" /product="AC1 protein" /db_xref="GOA:Q2A894" /db_xref="InterPro:IPR001191" /db_xref="InterPro:IPR001301" /db_xref="InterPro:IPR022690" /db_xref="InterPro:IPR022692" /db_xref="UniProtKB/TrEMBL:Q2A894" /protein_id="CAJ78326.1" /translation="MPRAGRFSIKAKNYFLTYPKCSLSKEEALDQIRQLQTPTNKLFI KICRELHGNGEPHLHALIQFEGKYNCTNPRFFDLISPSRSAHFHPNIQGAKSSSDVKS YMDKDGDTIQWGEFQIDGRSARGGQQSANDAYAKALNSANKSEALNVIRELAPKDFVL QFHNLNSNLDRIFQEPLAPYVSPFLSSSFTHVPEELEAWVSDNVMGSAARPWRPSSIV IEGDSRTGKTIWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMG AQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEFLDEEKNQSLKAWALKNATFI TLHEPLFSGAHQSPTPHSEDQGRQT" CDS complement(2197..2736) /codon_start=1 /gene="AC4" /product="AC4 protein" /db_xref="InterPro:IPR002488" /db_xref="UniProtKB/TrEMBL:Q2A893" /protein_id="CAJ78327.1" /translation="MPFRGHHINCPPIPPIATDFECPPIAIRQRKCQGLVVLASKPKT ISSHIPNALYPKRRHWIRSDNSKPQPINCSSRSAENSMGMGNLICMPLFSSRASTIVP THDSSTSYPLPGQHISIQTFRELNPAPTSSPIWTRTETPSNGASFRSTDDLLEEDNNQ PMTLTPRLLTQQISQRLLM" BASE COUNT 718 a 565 c 729 g 786 t ORIGIN 1 accggatggc cgcgcccgaa aaagcaggta gaccccacaa gatagccgcg cccgtgaaag 61 acagtggtcc ccgcgcactt gtattggttg gccagtcata ttcacgcgtg aaagtctaga 121 tatttggtgt gtgtctttat agacttcgtc gcgaagtagt tgagcgcgtc aacatgtggg 181 atccattgtt gaacgatttt cccgaaaccg ttcacggttt ccgttctatg cttgctgtta 241 aatatttgtt acatctggaa caggaatacg atcgcggtac tgtcggggct gagtatatac 301 gtgatctaat aggggttcta cggtgtaaga gttatgtcga agcgaccagg agatataata 361 atctcaacac ccgtatccaa ggtgcggagg aggctgaact tcgacagccc atacacgaac 421 cgtgttgttg cccccactgt ccgcgtcacc agaagcaaaa tatgggccaa caggcccatg 481 tatcggaagc ccaagatgta cagaatgtat cgaagcccag atgtccctaa gggctgtgaa 541 ggcccatgta aggtgcagtc ctatgaacag agggatgatg ttaagcacac tggtatggtc 601 cgatgtgtta gtgatgttac tcgtggatca ggcattaccc atagagtcgg gaagaggttt 661 tgtgtgaagt ccatatatat attgggcaag atctggatgg atgagaatat caggaagcaa 721 aatcatacga accatgttat gttcttcctc gttcgagata gaaggcctta tggtccgagt 781 cctcaagatt ttggacaagt gttcaacatg tttgataatg aacctactac ggcaactgtg 841 aagaatgatc ttagggaccg gtatcaggtg ttacgtaaat tccatgcgac tgttgttggt 901 ggaccctccg ggatgaagga acaagctctg gttaagaggt tttttaggat caataatcat 961 gtagtgtata atcatcagga acaggccaag tatgagaatc atactgagaa tgcgttgtta 1021 ttatatatgg catgtacaca tgcctcgaat cctgtgtacg ctacgctgaa aatacgcatc 1081 tatttctatg atgcagtgac aaattaataa aggttgaatt ttattgcatg ttgctccgta 1141 acttggatcg tgtttagtaa tacatcgtac agaacatgat caacagcttg aagtacagtg 1201 ttaatggaaa taacgcctat catatctaaa tactggagca tttgatatct aaagactctt 1261 aagaaacgac cagtctgagg ccgtaaggtc gtccagacct tgaagttgag aaaacacttg 1321 tgaatcccca atgccttccg gatgttgtgg ttgaaccgta tctggagtgt gatgatgtcg 1381 tggttcatgt tccctggtct cttgtcgtgg ttggtgatgt cgaaatagag gggatttgtt 1441 atttcccagg taaaaacgcc attctttgct tgaggcgcag tgatgagttc ccctgtgcga 1501 gaatccatgg ttgatgcagt cgatatggag atagaacgag cagccgcatt cgaggtctac 1561 ccgcctacgt ctgacggccc tggtcttcgc tgtgcggtgt tggactttga tgggcacctg 1621 agaacaatgg ctcgtggagg gtgatgaagg tggcattctt taaagcccag gctttaaggg 1681 actggttctt ttcctcgtcc agaaactctt tataggatga tgttggtcct ggattgcaga 1741 ggaatatagt gggaatgccg cctttaattt gaatgggctt cccgtacttt gtattgcttt 1801 gccagtccct ttgggccccc atgaattctt tgaagtgttt gaggtagtgg gggtcgacgt 1861 catcaatgac gttgtaccag gcgtcgttac tgtagacctt tggactaaga tccagatgtc 1921 cacacaagta gttgtgtggt cccagagatc gggcccatat cgtcttccct gtcctactat 1981 cgccctcgat gacgatacta ctgggtctcc atggccgcgc agcggaaccc atcacgttgt 2041 cggaaaccca agcttcaagt tcctcaggaa cgtgagtgaa agaagaagaa agaaagggag 2101 aaacataagg agctagaggc tcttgaaaaa tcctatctaa attgctattt aaattatgaa 2161 actgtaaaac aaaatctttt ggagctagtt cccttattac attaagagcc tctgacttat 2221 ttgctgagtt aagagccttg gcgtaagcgt cattggctga ttgttgtcct cctcgagcag 2281 atcgtccgtc gatctgaaac tcgccccatt ggatggtgtc tccgtccttg tccatatagg 2341 acttgacgtc ggagctggat ttagctccct gaatgtttgg atggaaatgt gctgaccggg 2401 aaggggatat gaggtcgaag aatcgtgggt tggtacaatt gtacttgccc tcgaactgaa 2461 taagggcatg cagatgaggt tccccattcc catggagttc tctgcagatc ttgatgaaca 2521 atttattggt tggggtttgg agttgtcgga tctgatccaa tgcctcctct ttggatagag 2581 agcatttggg atatgtgagg aaatagtttt tggctttgat gctaaaacga ccagcccttg 2641 gcattttcgc tgtcgtatag caatcggggg gcactcaaag tctgtagcaa tcgggggaat 2701 gggggggcaa tttatatgat gccccctaaa tggcatttat gtaatatcct cattgaattt 2761 gaatttgaaa cgcgtaaagc ggccatccgt ataatatt //