LOCUS AJ584850 9177 bp mRNA linear ROD 23-SEP-2008 DEFINITION Mus musculus mRNA for secreted nidogen domain protein (Snep gene), splice form SNEP. ACCESSION AJ584850 VERSION AJ584850.1 KEYWORDS secreted nidogen domain protein; Snep gene. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 9177) AUTHORS Gessler M. JOURNAL Submitted (03-OCT-2003) to the INSDC. Gessler M., Physiol. Chemistry I, Theodor-Boveri-Institute / Wuerzburg Uni, Am Hubland, 97074, GERMANY. REFERENCE 2 AUTHORS Leimeister C., Schumacher N., Diez H., Gessler M. TITLE Cloning and expression analysis of the mouse stroma marker Snep encoding a novel nidogen domain protein JOURNAL Dev. Dyn. 230(2), 371-377(2004). PUBMED 15162516 COMMENT Related entry: AY169783.1 FEATURES Location/Qualifiers source 1..9177 /organism="Mus musculus" /strain="C57BL/6" /mol_type="mRNA" /db_xref="taxon:10090" CDS 149..4360 /gene="Snep" /product="secreted nidogen domain protein precursor" /function="extracellular matrix component" /note="splice form: SNEP" /db_xref="GOA:Q70E20" /db_xref="InterPro:IPR000152" /db_xref="InterPro:IPR000436" /db_xref="InterPro:IPR000742" /db_xref="InterPro:IPR001881" /db_xref="InterPro:IPR003886" /db_xref="InterPro:IPR003961" /db_xref="InterPro:IPR009030" /db_xref="InterPro:IPR013032" /db_xref="InterPro:IPR013783" /db_xref="InterPro:IPR018097" /db_xref="InterPro:IPR035976" /db_xref="InterPro:IPR036116" /db_xref="MGI:MGI:3045960" /db_xref="UniProtKB/Swiss-Prot:Q70E20" /protein_id="CAE48492.1" /translation="MRLGAAWALLLAAALGLGTRGVRAAVALADFYPFGTKRGDTVTP KQDDGGSGLQPLSVPFPFFGAEHSGLYVNNNGIISFLKEVSQFTPVAFPIAKDRCVVA AFWADVDNRRAGDVYYREATDPAMLNRATEDIRRYFPELPDFSATWVFVATWYRVTFF GGSSSSPVNTFQTVLITDGRFSFTIFNYESILWTTGTHASSGGDTDGLGGIAAQAGFN AGDGHRYFNIPGSRTADMAEVETTTNVGVPGRWAFRIDDAQVRVGGCGHTTSVCLVLR PCLNGGKCIDDWVTGNPSYTCSCLAGFTGRRCHLDVNECASHPCQNGGTCTHGVNSFS CQCPAGFKGPTCESAQSPCDNKVCQNGGQCQAESSSAVCVCQAGYTGATCETDVDECS SDPCQNGGSCVDLVGNYSCICVEPFEGPQCETGSYLVPSPCLSNPCQNGGTCVDADEG YVCECPEGFMGLDCRERILNDCDCRNGGRCLGANTTLCQCPPGFFGLLCEFEVTATPC NMNTQCPDGGYCMEYGGSYLCVCHTDHNISHSLPSPCDSDPCFNGGSCDAHEDSYTCE CPRGFHGRHCEKARPHLCSSGPCRNGGTCKEMGDEYRCTCPYRFTGRHCEIGKPDSCA SGPCHNGGTCFHYIGKYKCDCPPGFSGRHCEIAPSPCFRSPCMNGGTCEDLGTDFSCY CQPGYTGHRCQAEVDCGHPEEVEHATMRFNGTHVGSVALYTCEPGFSLSALSHIRVCQ PQGVWSQPPQCIEVDECRSQPCLHGGSCQDLIADYQCLCSPGYEGVHCELETDECQAQ PCRNGGSCRDLPRAFICQCPEGFVGIHCETEVDACASSPCQHGGRCEDGGGAYLCVCP EGFFGYNCETVSDPCFSSPCGSRGYCLASNGSHSCTCKVGYTGKDCTKELLPPTALRV ERVEESGVSISWSPPEGTTARQVLDGYAVTYASSDGSSRRTDFVDRSRSSHQLRALAA GRAYNISVFSVKRNTNNKNDISRPAALLTRTRPRPIEDFEVTNISANAISVQWALHRI QHATVSRVRVSILYPEASAVQSTEVDRSVDRLTFGDLLPGRRYTVRLTTLSGPGGAEY PTESLASAPLNVWTRPLPPANLTASRVTATSAHMIWDTPAPGISLEAYVINVTTSQST KSRYIPNGKLVSYTVRDLMPGRRYQLSVTAVQSTEQGQLHSEPAHLYIITSPRDGTDR RWHHGGHHSRMLRNRPAPVRLPELRLLNDHSAPETPTQSSRFSELVDGRGRVSARFGG LPSRAVTVRSQPTTPVPLKNTEAPEQVHLALQLPKNSSKDTESTPGSCSEDACQNGGT CVPGADAHSCDCRPGFKGRHCELACEKVPRPCTRLFSETKSFPVWEGDICHHVYKKVY KVHQDVCFKERCQSTSLRKPKQETK" sig_peptide 149..214 /gene="Snep" /note="splice form: SNEP" mat_peptide 215..4357 /gene="Snep" /product="secreted nidogen domain protein" /note="splice form: SNEP" exon 2232..2405 /gene="Snep" /number=15b /note="splice form: SNEP" /note="absent from splice form SNEP-deltaCCP" BASE COUNT 2356 a 2578 c 2280 g 1963 t ORIGIN 1 ggtccgcagt cgtgcctcac gccttcctaa gctgcgcggg tctccggagt gcgacgcgag 61 ctagcggaag ggaactgtgc ggccagtcgg tcgtgcggtg actgcagcca cctgcccgag 121 ccccgtggcc cgccctcaga tcccggcgat gcgcctcggc gccgcctggg cgctgctgct 181 ggccgcagcc ctggggctcg ggacgcgcgg ggtgcgcgct gccgtggccc tcgccgactt 241 ctacccgttc ggcacgaagc gcggcgacac cgtcaccccg aagcaggacg acggcggctc 301 agggctgcaa ccactctcgg tgccctttcc gttcttcggc gccgagcact ccggactcta 361 cgtgaacaat aatgggatca tctccttcct gaaggaagtt tctcagttca cccccgtggc 421 cttccccatc gccaaagacc gctgtgtggt agcagccttc tgggcagatg tagacaaccg 481 gcgtgcaggt gatgtctact accgggaggc caccgaccca gccatgctga acagagccac 541 ggaggacatc agacggtact ttcctgagct cccggacttc tctgctacct gggtttttgt 601 tgcgacctgg taccgtgtga ccttctttgg aggcagcagc tcttcccccg ttaacacatt 661 ccaaactgta ctcatcaccg atggccgatt ctccttcacc atcttcaact atgagtccat 721 cttgtggact accggcacac acgccagcag cgggggtgac actgatggct tgggaggcat 781 tgcagcccag gcaggtttca acgcaggtga tgggcaccgc tacttcaaca tccccgggtc 841 gcgcacagca gacatggctg aggtggagac caccaccaac gtgggcgtgc ccggccgctg 901 ggcgtttaga atcgatgatg cccaggtgcg cgtggggggc tgcggccata caacctctgt 961 gtgcctggtc ctgcgtccat gcctcaatgg tggcaagtgc attgatgact gggtcacggg 1021 caatccctct tacacctgtt cctgtctcgc tggcttcaca ggccggagat gccacctgga 1081 tgtgaacgag tgtgcttccc acccctgtca gaatggtggg acctgcaccc atggtgtcaa 1141 cagcttcagc tgccagtgcc cagccggctt caagggaccc acctgtgaat cggcccaatc 1201 tccgtgtgac aacaaagtat gtcaaaatgg tggccagtgc caggcagaga gcagctctgc 1261 agtatgtgtg tgtcaggctg gatacactgg ggccacctgt gagacagatg tggatgaatg 1321 cagttctgac ccatgccaga atgggggatc atgtgttgac ctggttggaa actacagctg 1381 tatttgtgtg gagcccttcg agggacctca gtgtgagaca ggaagctacc tggtgccttc 1441 accctgcctc tccaacccct gccagaacgg gggcacctgt gtggatgctg atgagggata 1501 cgtgtgtgaa tgccctgaag gcttcatggg cttggactgc agagagagga tcctcaatga 1561 ctgtgactgc cggaacggag gcagatgcct gggtgccaac accaccctct gccagtgtcc 1621 tccaggcttc tttgggctcc tctgtgaatt tgaagtcaca gccacgccct gcaacatgaa 1681 cacgcagtgt ccagatggag gctactgcat ggagtatggc ggaagctacc tatgtgtctg 1741 ccacacagac cacaacatca gccactctct gccatccccc tgcgactcag acccttgctt 1801 taatggaggt tcctgtgacg cccacgagga ctcctacacg tgcgagtgcc ctcgtggatt 1861 ccacggcagg cactgtgaga aagcccggcc acacctgtgc agctcagggc cctgccggaa 1921 tggaggcaca tgcaaggaaa tgggcgacga gtaccgctgc acctgccctt atagattcac 1981 tgggagacac tgtgagattg gaaagccaga ctcctgtgcc tctggcccct gtcataatgg 2041 tgggacttgt ttccactaca ttggcaaata caagtgtgac tgccctccag gattctctgg 2101 acggcactgt gagatagctc cctcaccctg cttccggagc ccatgtatga atgggggtac 2161 ctgtgaggat ctagggacag atttctcctg ctactgccag ccagggtata caggacaccg 2221 gtgtcaggca gaagtggact gtggtcaccc tgaggaggtg gagcatgcta ccatgcgctt 2281 caacggaact cacgtgggct cagtggccct gtacacatgt gagcccggct tcagcctgag 2341 tgccctcagc catatacgtg tctgtcagcc acaaggggtc tggagccagc ctccccagtg 2401 cattgaagta gatgagtgcc ggtctcagcc atgcctgcac ggaggctcct gccaggacct 2461 cattgctgat taccagtgcc tctgcagccc ggggtatgaa ggagtccact gtgagctaga 2521 gacagatgag tgccaagcac agccatgcag aaatgggggc tcctgcaggg acctccccag 2581 ggctttcatc tgccagtgcc ctgaaggttt tgttggaatc cactgtgaaa cagaggtgga 2641 tgcctgtgcc tccagcccct gccagcacgg aggccggtgt gaggacggtg gtggggccta 2701 cctgtgcgtg tgtccagagg gcttctttgg ctacaactgt gagacagtga gtgacccctg 2761 cttctctagc ccctgtggga gccgcggcta ctgcttggcc agcaacgggt cccacagctg 2821 tacctgcaaa gtgggctaca caggcaagga ctgcaccaaa gagctcctcc caccaacagc 2881 cctcagggta gaaagggtgg aggagagtgg ggtctccatc tcctggagtc cacccgaggg 2941 caccacggcc aggcaggtgc tggatggcta tgcagtcacc tatgcctcct cggatggatc 3001 gtcccggcgc acagactttg tggaccggag ccgctcctct caccagcttc gggccctagc 3061 agccggccgc gcctacaata tctccgtttt ctcagtcaag agaaacacaa acaacaaaaa 3121 tgacatcagc aggcctgcag cactgctcac ccgcacccga ccccgcccta tagaagactt 3181 tgaggtcacc aacatttcag ccaatgccat ctcagtgcag tgggctcttc acaggatcca 3241 gcacgccact gtcagcaggg tccgggtgtc catcctctac cccgaggcct ctgcggtcca 3301 gtccactgag gtggacagga gtgtggaccg cctcacattt ggggacctgc tgccagggag 3361 aagatacact gtgcggctaa ccacccttag tgggcctgga ggagctgaat atcctactga 3421 gagcctggct tcagctccac tgaacgtgtg gacccggcct ttgccaccag caaacctgac 3481 tgcctctcga gtcacagcta cctctgccca tatgatctgg gacacccccg ctccaggtat 3541 ctcactggag gcttatgtca tcaatgtgac cacaagtcaa agtaccaaga gccgctacat 3601 ccccaatggg aagctggtgt cctatacagt gcgtgatctg atgccaggtc ggcggtacca 3661 gctctcagtt acagctgtgc agagcacaga gcagggccag ctgcacagtg agcctgcaca 3721 cctctacatc atcacctccc ccagggatgg caccgacaga cgctggcacc atggaggaca 3781 ccactcacgg atgctcagaa acagaccagc ccctgtgcgc ctgcctgagc tgcgcctgct 3841 caatgaccac agtgcccctg aaacaccaac tcagtcatcc aggttctcag agcttgtaga 3901 tggaagagga agagtgagtg ccaggtttgg tggcttgccc agcagagcag taactgtgag 3961 atcacaaccc accactccgg tgccactcaa gaacacagag gcccctgagc aggtccatct 4021 ggccctccag ctacccaaga acagcagcaa agacacagaa agtacccctg gcagctgttc 4081 agaagatgct tgtcagaatg gaggcacctg tgtcccaggt gccgatgccc acagctgtga 4141 ctgcaggcct gggttcaaag gcagacactg tgagcttgcc tgtgaaaaag tgccccgccc 4201 ctgcacacgg ctgttctctg agaccaagtc atttcctgtc tgggaaggcg acatctgcca 4261 ccatgtgtat aagaaagtct acaaagttca ccaggacgtg tgctttaagg agcgctgcca 4321 gagcacaagc ctcaggaaac ccaaacagga aacaaagtaa cagtcaaaca ctgaagagat 4381 cttaaggaaa tcattctcct tcataccaag atctgttgag aactggagac accatcacac 4441 ccagcaacct ggacaccaag gtcctttatc agacactgat ggtgacaact cagcactgtg 4501 ctgttacaga cccaaccagg aaggttccag aattccctgt ctatagcctc tcaatagaca 4561 taacctggtc tgagcttgca tatgaatcta ctttcaggtg gaaatgactc tctcattgca 4621 gaccagttac aatgaggtac aagaatcacc tggccccttc aggaccatgg gccttgctgg 4681 cagatggatc aaggatgcca aacagtccaa acaatgccaa aggaaaggac ctaaggacat 4741 acccccaagc cctacgagca gcattctgct ggtagactag ggcgggagtc ttgtcatgta 4801 acctgcagga gatcctaaat atagcctctc tctgggggtg ctagagtgga ccctggaatt 4861 ctaagcacta ataaccctga aatcaaagaa actgcccgtt tgatccagca tgccccaccc 4921 cgcctcccca agcataaact gtgagatgtt aaagggcatt ggaatttttt ttttcacagt 4981 agtctggaaa atactgggtt acactacaga aatccctgta taggctgaac acagccccac 5041 actgacttat tggcataatt ggaatgacag actggctagc cagagagaat ttactcctct 5101 cccttggagg agccagggca gtccatcttt ccagtggtgg aagagaggca tatctggaaa 5161 gctcccactt caggagtgac tatcaccttt ttcttctata gtgtaggaca tgaaggagaa 5221 atgtcaccca aaggcctaag aacaaacaaa agcaatggag ttccgggtga aggtcatcct 5281 aagaaaacag tgcctgcagt gacagtgaca ggcacagaca gaagctcaca gtcggaccct 5341 gaaatcaggc aggcatcagg agggcaggct ctcagacggg cctagggagc agggcctgtg 5401 cctcctgacc ggttcagatg tgaaactctg caggaagaac agccgacaag actcaagtcc 5461 tgtgcaccca acagcatcgc cttttcagcc cagcaccaag aatgcacaca aaacaccctc 5521 caacacttgt gagcaacaca tctggcaaag ataaaaaatc cacaaattat ttggttttaa 5581 aatatttata tggtaataag tcacttgaaa tattaatgca tcttttacga actcacccag 5641 aaaacccatt tttataaaaa aaaaaaagag agagagaatc ctagatactt accacataat 5701 ggcttataga attcctattc tcagagcaac acacattaca cacagccctt tctctttctc 5761 tgaagaaaaa caccagaatt tgcgacccac agctgccctg agaaagccgg cagtgccatc 5821 cccgccaaaa gaaaggcagc agagggccaa gcagcctact gatgcaaagc cccaggctgg 5881 gcacgagtgt cctcagggtg cgtggctcct gtccatccct ccctgcatcc cagccggctg 5941 gaaatctggc tcctggggac agtgcttgct gtctccagag aaagacagtg ggtacaaaga 6001 ggagtgtgcc ccagctcact gttactcctt caaaaggacc agcatgtgct ggtaacactg 6061 cccacctccc ggatttccaa aactcaggaa aatgatgtcc aaaacttaaa agccaagctc 6121 ctggctgaaa gcagtctccc ctgagatctc tgtcctcaga tttccagaaa agagacaacc 6181 agacctgcac acccaaagcc gcctgccggg gaagcactga agcacctgcc atctcaatcc 6241 agcctgctgt ttctgcagct ctggtcagtt cccctgtggg aagttacctg ggttaccaag 6301 ctctgtgagt ggtgcttctg tgctcagaaa cccaccccca gatccccgtg ccagagacat 6361 gacccttgaa ctcccaaaac atggagaagg aaaagactca actttcataa aaaaatacaa 6421 gaaaggctgt gtggaaacag gtgacctcta ccctgctcct ctcctcattt atactgacct 6481 aaagaagaag tgctaattac tactatggtg gagtttagac acttggtcta caactcaggg 6541 gggcagggca gtcagatgct caggcaggat tttgggcttc gaagatagaa tgacctctct 6601 ggcacacacg tgaccctgct attgtactgc caacatggta acagatgtag atagcatagc 6661 tacattccaa tgaaacttca tttacgaaaa caggcggtag gctagagttg gcaggcaggt 6721 gcctggttta taagatgatc tagacttcag ccttctgtgg agaatgctat ctcctgaatg 6781 acaagtagcc atcaagacat gaaaaacccc taaactttca tagaagaaaa gcaatcaaga 6841 cccttgctca ggagcctaag gtatacatac ttacaccata gagcagcaaa agctatcagt 6901 tcaaatctaa aggcagcaca cagtagcaca gggcaggccg gctgcaggac acagggtcca 6961 accaaggctt cttgtaatct gcccctgaag tagatggctg tgggccacca aaacgaaaat 7021 actttcttta cacagcctcc gctttccatc ccattcccaa ggctctaagc agcttcctcc 7081 tccctgcagt gaccgcacaa tcagaaaagc caaccacacc tagattccat gagagcagag 7141 ctgaccagca ccagcaccaa gaactgcatc ccgaccagag aggccttctg ccctccacag 7201 ttcataaaaa catactttga agtataacct tttacatttt attctcacta gaaaattctg 7261 agcctgtgta ttactttttt ttttcttttt caaggagggt cagtcacatc aaaaactcac 7321 tactgtatct tagataccca ctagagatct ggagaccgag taagctacag cgttaacagt 7381 gaacagcaag atcaagcagc acctctggga acgtagatgg gatcttcgta ctatacctca 7441 ggactctcac ccccaagccg atgctgccac attcccatct ccagttggag ccagcctgct 7501 gtgtggcgct gtcgggcaat cattccaact ggagtggaga aagacttgcc tgtgctgagg 7561 aattagtata catcattcca aacatgctgt ctctgctttc ttacacagaa taattaaatc 7621 cctcaaaaca gtcagcgtcc acttgggaaa tgtcatagtg gaatcagcaa acagacaagg 7681 tggagattta tttttgtgtc caactgaagt aattatgagt tgttgggctc accatttgct 7741 aatcaaaact gaagatgagt agattaccta attgagctca cagttaggat tctattccgt 7801 tctgatgagt ccaaggccaa acaccctaca ttcagggagg agagtgtcga tcacaaaaag 7861 accacaaaat gggaagagta agcagcaaag aatggatcat tgttctcaaa cagctttgtc 7921 cacagccaag aacaggcaga aggcattcgt tcccctctac tgcctatggg atgtggggta 7981 gagaagatgg cttgctacgt cctgctttct gtggagagtc caacaggcaa ggacacgccc 8041 ttgccaggaa tgagcttgcc tcacatacct gccatagtga gaactgtgtg tgtggagggt 8101 aggggtgggg ggaggaatct tggaatgatt gcttttcttt gtaaacaccc tcctctttgc 8161 agtcaggttc caggtaagtc aagagccgcc tcaccttggt gctgattcct cacaaaatgc 8221 acctcagatc cagcagtatc tctgctttag acagaaatga tacatcaggt ccatttacaa 8281 cacacattag ctgtagtcac agtacttttg tgggccaggt ctttgagcag tttctcagct 8341 ttggcattgc tttgtgggcc taattattcc ttatgcggtg caatgtacaa tattttacag 8401 catccctggc tctgaccaca agatcctgag gccatgacac acacacacac acacacacac 8461 acacacacac acacacacac aaatccccaa agattgtcag atgtctggag gattaaggtc 8521 atcctcatgt aagcactgga ttcagtctaa acacaaggcc cacattgggt ttcgtgtgac 8581 tgttaaatgt caccaaatgg gggaaaaata ctaccaagca ctcctgactt tggtcctata 8641 accaaaaagc tttctgcatc accctgtgca gtttcctgag gaagaggcac agacaacttt 8701 ccaagaggcc tcagttctct gaccctctaa gcctgagctc caccaaatca ggcctctcct 8761 ccagctcacc tcatcctagt cccagtacat cacatggctc cactgcacac actccacact 8821 gcccagtgct ccccagtgct ggtctctgag caggctcact cttagcacag tctacagagc 8881 cagaaagata ggaggccttg aagtggcaac cagccaggaa ccaacatgaa ggccaacttg 8941 cccaagcagg aagggtcagc aactgacaga gaagcatttt gctagtctga caaccgtgtg 9001 actaaaggac atgttactaa cgtaaccaac tgcctctcac tctgctgtac actcaacacg 9061 tcagaaggct gggaaatggt gtcagattta gaagctgcct attgtgtggg aaacctgcta 9121 cttgttttca ttaaataaag tgctatgaca tactaaaaaa aaaaaaaaaa aaaaaaa //