LOCUS       AJ560661                1183 bp    DNA     linear   ROD 14-NOV-2006
DEFINITION  Mus musculus partial ORF1 for hypothetical protein, exon 1 and
            joined CDS, strain A/J.
ACCESSION   AJ560661
VERSION     AJ560661.1
KEYWORDS    ORF1.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1183)
  AUTHORS   Kierstein S.
  JOURNAL   Submitted (05-MAY-2003) to the INSDC. Kierstein S., Genetics of
            disease resistance, I.L.R.I., P.O. Box 30709, Nairobi 00100, KENYA.
REFERENCE   2
  AUTHORS   Kierstein S., Lundstroem C., Iraqi F., Gibson J.
  TITLE     Fifteen gene-associated SNPs within the MHC region on mouse
            chromosome 17
  JOURNAL   Unpublished.
COMMENT     exon 2: AJ560659.1, exons 3 and 4: AJ560660.1
FEATURES             Location/Qualifiers
     source          1..1183
                     /organism="Mus musculus"
                     /chromosome="17"
                     /strain="A/J"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:10090"
     variation       604
                     /replace="a"
                     /note="SNP"
                     /citation=[2]
                     /experiment="experimental evidence, no additional details
                     recorded"
     variation       614
                     /replace="a"
                     /note="SNP"
                     /citation=[2]
                     /experiment="experimental evidence, no additional details
                     recorded"
     variation       680
                     /replace="t"
                     /note="SNP"
                     /citation=[2]
                     /experiment="experimental evidence, no additional details
                     recorded"
     CDS             join(1048..1167,AJ560659.1:198..323,AJ560660.1:10..198,
                     AJ560660.1:493..>651)
                     /product="hypothetical protein"
                     /note="ORF1"
                     /db_xref="GOA:Q9Z1P5"
                     /db_xref="InterPro:IPR002172"
                     /db_xref="InterPro:IPR023415"
                     /db_xref="InterPro:IPR036055"
                     /db_xref="MGI:MGI:1860083"
                     /db_xref="UniProtKB/Swiss-Prot:Q9Z1P5"
                     /protein_id="CAD91188.1"
                     /translation="MARGGAGRAVALGLVLRLLFGLRTGLEAAPAPAHTRVQVSALEL
                     TPARQTPSSVLPVAIVCPLPGAVMGTRTALMAVTRKTVSALPCSCDNISGCSDVSDKN
                     LNCSRPPCQESELHCILDDVCIPHTWRCDGHPDCLDSSDELSCTDTEIDKIFQEENAT
                     TTRISTTMENETSFRNVTFTSAGDSSRNPSAYGVIAAA"
     exon            1048..1167
                     /number=1
                     /note="ORF1"
     intron          1168..>1183
                     /number=1
                     /note="ORF1"
BASE COUNT          277 a          274 c          306 g          326 t
ORIGIN      
        1 gactccatgc attcaactgt ggaagtggga tgagaaaacc caaggctgcc aatctgtatc
       61 aattacaatt aatacaattg tagtatcaat ctaccaggcc catgttagaa taaatgtttc
      121 tcaagtgtgt gagaactaga agttaatgag gttgggatgg gaaccaagga gatggtcagt
      181 ccaggttcga agccagtaac tgttcactca tttgatcatt ccatcattcc ctcactattt
      241 tcgccattca tcaaaggaaa ccaacatcct ggttcgcctg cagctggcat tctagggggc
      301 aatcaagaca ataaagctaa aataagtaaa atccttaggt ggcacaaagg agggacctgc
      361 tggggagtgt tcacagggtg tggctgccat attcattggg accattgggc agtgatattt
      421 gcagtaggct acatgtgaag tttaggtcaa aattgctaag ttcatttata tccctagaag
      481 gtttattttt atttttggtt ttttgagaca gggtttctct ttgtagcccc cggtgtcctg
      541 gaacttactc ggtagaccag gctggcctgg aactcagaaa tctgcctgtc tttgcctccc
      601 aagtgctggg atttaaggcg tacaccacca ctgttcagca gaagtttatt atttcaagtt
      661 aatgtggtta ttttcatgga actggggatt aaacctagag cctcctgaat actactaggc
      721 aagtgctcta ctactgaact actccccgaa ttcctgtttt ttattctgag gtagggtctc
      781 ctttaatagc ctaggttggc tttgttcttc ctcagcctgt agaatatctg ggagttacag
      841 gcctaggtca ccaaacacat taggttttac tgctaggaag aagccaggag gagccctaaa
      901 atcaaagtac ccttgtattc gggtacttac ggtcgcaggc ttgcttgcgc cactcccccc
      961 tgcctttgtg tgcgcgtgcg cgagaatcag cgcgtccttc tgactgagcg gctgcggctg
     1021 gagcggagca gttcggctag ctgttggatg gcgcggggcg gagctgggcg ggcagtggcc
     1081 ctgggcctgg tgctgcggct cctctttggt ctcagaacag gcctagaggc cgctccggct
     1141 ccggcccata cccgggtcca agtctccggt gagtgaaccc ccg
//