LOCUS AJ439690 7975 bp RNA linear VRL 03-NOV-2003 DEFINITION Cucurbit yellow stunting disorder virus p5, Hsp70h, p6, p59, p9, cp, CPm and p26 genes, genomic segment RNA2. ACCESSION AJ439690 VERSION AJ439690.2 KEYWORDS coat protein; coat protein minor; cp gene; CPm gene; heat shock protein 70 homologue; Hsp70h gene; hydrophobic-rich protein; p26 gene; p5 gene; p59 gene; p6 gene; p9 gene. SOURCE Cucurbit yellow stunting disorder virus ORGANISM Cucurbit yellow stunting disorder virus Viruses; Riboviria; Closteroviridae; Crinivirus. REFERENCE 1 AUTHORS Coutts R.H.A. JOURNAL Submitted (22-MAR-2002) to the INSDC. Coutts R.H.A., Biological Sciences, Imperial College, Sir Alexander Fleming Building, Imperial College Road, London SW7 2AZ, UNITED KINGDOM. REMARK revised by [3] REFERENCE 2 AUTHORS Livieratos I.C., Coutts R.H.A. TITLE Nucleotide sequence and phylogenetic analysis of Cucurbit yellow stunting disorder virus RNA 2 JOURNAL Virus Genes 24(3), 225-230(2002). PUBMED 12086142 REFERENCE 3 (bases 1 to 7975) AUTHORS Coutts R.H.A. JOURNAL Submitted (30-OCT-2003) to the INSDC. Coutts R.H.A., Biological Sciences, Imperial College, Sir Alexander Fleming Building, Imperial College Road, London SW7 2AZ, UNITED KINGDOM. FEATURES Location/Qualifiers source 1..7975 /organism="Cucurbit yellow stunting disorder virus" /segment="RNA2" /host="Cucumis sativus" /mol_type="genomic RNA" /geo_loc_name="Spain:Almeria" /db_xref="taxon:51330" CDS 1178..1303 /gene="p5" /product="hydrophobic-rich protein" /db_xref="GOA:Q8QMD8" /db_xref="UniProtKB/TrEMBL:Q8QMD8" /protein_id="CAD29116.1" /translation="MYKNFSTIIFQFVCSRVKSWRRLVWSLVLLSLLSAVMLMVL" CDS 1234..2895 /gene="Hsp70h" /product="heat shock protein 70 homologue" /db_xref="GOA:Q777N4" /db_xref="InterPro:IPR013126" /db_xref="InterPro:IPR018181" /db_xref="InterPro:IPR029047" /db_xref="UniProtKB/TrEMBL:Q777N4" /protein_id="CAD29117.2" /translation="MAKAGLEFGTTFSTISSYVNGVMKVLKLNETEFIPTCLAITSNN DVVVGGPAQVLSNSDMPNCYFYDLKRWVGVDSINYNVIKTKINPAYVTELRGNDVYIT GIDRGYTCTYTVKQLILLYIETLVRLFSKVESITITSLNVSVPADYKCKQRMFMKSVC DSLGFSLRRIINEPSAAAIYFVSKYPQYNNFLMYDFGGGTFDSSLIVRDGKYVTVADT EGDSFLGGRDIDNAIADYITTTYGMKGGLSADVLASIKEDCNSKGRENFNVIDSSGKL HNVKFTRQDLSRCIEPFSKKSIALLDNMVVRNITKDSAVFMVGGSSLLKKVQHDVMNY CARTKLECIIDKDLRSAVSFGCSMSHAQEDTKNMIYIDCNSHPLMGISYFCSPKIIVR KPVAIPYTGVREETLTRHYTTILNVYEGSDPFVLNNDWLISANMQSNKYGEIGDTLQY LYKYNVDGILELVVRNKRTGKETVLPIPLLLTESIKKLDVNLTQLSNIDELATLVAIM SYYKPELKYLLTYVKTPTIFENEIKKFGSGEDLYKSLAALNKNFK" CDS 2902..3066 /gene="p6" /product="p6 protein" /db_xref="GOA:Q777N5" /db_xref="UniProtKB/TrEMBL:Q777N5" /protein_id="CAE53632.1" /translation="MSLIIVIYSFCDGINIHYCSDRRDFEGDHQVRQLDNLQDLCEIL LTHPFYKTSW" CDS 3060..4616 /gene="p59" /product="p59 protein" /db_xref="GOA:Q8QMD7" /db_xref="InterPro:IPR004909" /db_xref="UniProtKB/TrEMBL:Q8QMD7" /protein_id="CAD29118.1" /translation="MVNLIDSPNLHDAFSLLFKARDVKGKIESLVKYIKSDLSTVNAS AFRPIGGVRGLVYDSKFSIFQGNVRFNIDDDKSILKCISVYFYHVDPSLLKKTAYKPE SFFITDNWREHLEKWRKYIDMTMNEYLVDNKDVGCTYTEKEIKNHYPGQSDIRLITLY RVCNSQGRLVPLQEFLSSEIKGFDIKTDDAGPTIAEGLGGNDLFKECLVAFKDYVKLN SSKAGLEKIKVNQRYFSVYLDSMNSNNDLKNISDNPLVLAKFMLDFDNLTSSTVGFAA NIDAIKKLDVNFKAFCEKVFNLKTRLSEDKLFINMPKNSVVEVLGQPISIGNYIRSSK IPPPVSNSSSLPEHIDELVSKAMCDFMSQFGEFESKFVLDGLLFVFGKLTTNEKFWRS DKLVSFSIDKKPISFRACDFRSYLIGSVKSRDVLFNCDNIIRQWANHRGNRAMRLFKV SGFKPGLFSTVPNILPWMRFDFFKLLSSDYLDDDEIKSLRTLRLMTEHKSNKTKADEH RFTTWISQRL" CDS 4595..4834 /gene="p9" /product="p9 protein" /db_xref="GOA:Q8QMD6" /db_xref="UniProtKB/TrEMBL:Q8QMD6" /protein_id="CAD29119.1" /translation="MDLTTVIDKFGVEKVEVYLKLYNQIRMERGGVSNFLLRLIDTKV KKFLDHDTKMDYNDEETIELLQCLSSFVNMIPSYY" CDS 4927..5682 /gene="cp" /product="coat protein" /db_xref="GOA:Q9WMZ6" /db_xref="InterPro:IPR002679" /db_xref="UniProtKB/TrEMBL:Q9WMZ6" /protein_id="CAD29120.1" /translation="MASSSENKTSKDDTKIISEHVEDESDNETKGVTKKDIDGDNKST YNPRDLITADHMDPTKLKDIKVFSNRADVMSDQDEATFAKCMKDFATIVFGKEPDEKE FLTFYISLVQCWLNQSTSMKNAKQMNLTNTLMHGDQKKTWRTADFINYVKGNLPHVPN PFRQYARAHEHEIEILKATGKVTVDHHLQAKHGVLPQFWNVPADYVNGSLMNISEDDL AANLLMKCQALKRNEKEKKYYNVSQLAPGGCGN" CDS 5682..7061 /gene="CPm" /product="coat protein minor" /db_xref="GOA:Q8QMD5" /db_xref="UniProtKB/TrEMBL:Q8QMD5" /protein_id="CAD29121.1" /translation="MDREDFIDVGSDDLNTRRNGVLWCQSFNANVNKLKKFELKYIYT DRLNLSLFTLQLKFKLSRGNVLYEIRFNDPKSRNFKQVGLTWWSNAFEKLDSAKPNRI GYISTILIFPEGNDLIFSVNGFRFVKLFKSFDPTDLVISLTHPIQDIQIENAKDYCSN HVPWESVFMSCDLDNESIIPKSVNCYALDLNTNNVKSLEKLAAIDISQVKSSKDLNVR EKSDEVKPKPKPKEDDSTEKKDERSKDGSDQTENKQKKEADEKKNPSEEPKTDPTVEE KPREVNSKLKGVERYPINRQELKKVFEEAVEHYVKGGFSRSQAELIIFQMGVSFCTSK NSIGDIHSHLLWEKEDGKIVRVRKGEHVKMLYSFVRTPCNIERAMLRMYSSQIFKLLK DGVLVPGWSHVKRRNFKEECAYMACDFYDFSSIKLSEQEKLAANSAQNYVLLKDKHKR SIVNVNQLW" CDS 7066..7752 /gene="p26" /product="p26 protein" /db_xref="GOA:Q8QMD4" /db_xref="UniProtKB/TrEMBL:Q8QMD4" /protein_id="CAD29122.1" /translation="MEFPTNDIEHIQEDGEDFPAIISKNLNSVLNAIQNHSLYDMIML DNAIETCYTLIIMCQKLYEDVNLYRATNPRTESFRNASVNVNTILNNKDKLFPKLSSW QIDDLVKQLIPILNFLKDSKTKIMNDLRVNNLFSVYRINDVRSLLTSLQTFLTSYYNF GRNTVPEFSLYIDDSEKLEKLIKGYKSKRYLTKSVRNELVNYFSNNLVYQISFLFDNI GINIKPIKNF" BASE COUNT 2651 a 1277 c 1632 g 2415 t ORIGIN 1 gaaatactac ggtaaatcca ttgggatacg gccagacagc cttcctccca ctccaccccc 61 ccctctcttc taatgaagag tattagatat ggtaaacttt aaaccaatat cgtgacacta 121 tgtgtcccgg ttgttccagc aagttggtac tggagccatg tctaatattt agatttagac 181 ccatctatat atatatgtat atgtatatat tagattagtt tattcataca taaacataac 241 acaacacaaa caaaatcagc atatgtgagt accttaaact aggctaggct agacaagctt 301 cggttgattg cattatcaca taggtgcatc aacaaactgg tggttgccac agtggagacg 361 aactccgaag gcagccgacc accttgttgt gaagagcccc gtttaagccc ccccatatat 421 gttgattagt actttccaaa tcaaacggtt ttatggttaa aatttttact ataaacctag 481 tctgagatga taagattcaa gggctgtgat tgggcaagtt ggtactcaag aacttttagt 541 catgattcaa tatgatttga atacgcttgt tgtgttgtag taaaagaact cttttcaaac 601 actacgctgt cacgttaatc accgagtttc aaaaggaaaa atcttagtag tgatgttttg 661 ccttcccaac gagtgttggt agtcacggat cgaagagatc gacatcacac actgagatgt 721 tcgttagata caaagtgatt aatcgtgagt gttcgaattg atgttttgtg tttatatatg 781 tagctcatgt acaaaattct ggctctgcag ttttcaagct ccttaagact taaagccact 841 gggcttaatg tgggagaagt tctcctagtg taagagatga actccgtgcg ctcgttaggt 901 accggataac tcagagtgtt ggttctgaga aggagtgtct gaaggttata tccagaagtt 961 tgtattgagt aaaaaataaa ctaatcgttg tttttaataa gaataggcgt agtttagtta 1021 gtcataggtt catttatggt agattatact ataagcttcc tcgtctctta ggtttagggc 1081 cgtggataag tcagcaagtt ggcactgata gatctattgt gattgatcca ttgttctaac 1141 tagtccacgt cctgttcttt agcttttgtt taaatatatg tataaaaatt tttctactat 1201 tatttttcaa tttgtgtgct ctagagtcaa atcatggcga aggctggttt ggagtttggt 1261 actactttct ctactatcag cagttatgtt aatggtgtta tgaaagtttt gaaattgaac 1321 gaaactgaat ttatccctac ctgtttagcc ataacgtcta ataatgatgt ggttgttgga 1381 ggtcccgctc aagtattgtc taatagtgac atgcctaact gttactttta tgacttgaaa 1441 aggtgggtag gtgttgacag tatcaattat aatgtgataa aaaccaaaat caatccagcg 1501 tatgtcaccg agttacgtgg taacgacgtg tacatcactg gtatcgatag aggttatacc 1561 tgcacttaca cagtcaaaca attgatattg ttatacattg aaactttagt aagattgttt 1621 tctaaagttg agtccataac cataactagt cttaacgtct ctgttccagc tgattataaa 1681 tgtaagcagc gtatgtttat gaaatcagtt tgtgacagtc taggtttttc attacgtaga 1741 attataaacg aaccatctgc agcagctata tactttgttt caaagtatcc gcagtataac 1801 aacttcctga tgtatgactt cggaggagga acttttgatt cttctctaat agtcagagac 1861 ggtaagtatg tcacagtggc tgatactgaa ggtgattcgt ttttgggagg tagagacatt 1921 gataatgcta tcgctgacta tataacaacg acgtatggta tgaaaggtgg tttgtccgct 1981 gacgtactgg cgtctataaa ggaggattgt aattctaagg gtagagagaa tttcaatgtt 2041 atagattcat caggcaaact tcataatgtg aaattcacaa gacaagatct gagtcgttgc 2101 attgaacctt tctctaagaa gagcatagca ctgcttgata atatggtagt gcgtaacata 2161 acaaaagatt ccgctgtgtt tatggttgga ggttcatcat tgttgaagaa agttcaacat 2221 gatgtgatga attactgtgc taggacgaaa ctagaatgca tcattgataa agaccttaga 2281 tcagcagtgt catttggttg ctctatgtca catgcccaag aagacacaaa aaatatgata 2341 tacatcgatt gtaattcaca tcccttaatg ggcatatcat atttttgttc tccaaagatt 2401 atagttagga aacctgtggc cataccttat actggagtgc gagaagaaac cttaacaaga 2461 cactatacaa caattttgaa cgtttacgag ggatcagatc ccttcgtttt gaacaacgat 2521 tggttgatta gtgccaatat gcagtccaac aagtacggtg agataggtga tacattacaa 2581 tatctttaca aatataatgt agatggcatc ttagagttgg ttgtgaggaa taaaagaaca 2641 ggtaaggaga cggtacttcc aattcctttg cttttgactg agagtataaa gaagctggat 2701 gtaaatctaa ctcaattgtc aaatattgat gaattggcaa ctttggtagc tattatgagt 2761 tactataagc ctgaattaaa gtacctcctg acttatgtaa agacaccaac tatttttgaa 2821 aatgaaatta agaaatttgg atctggtgaa gatttatata aatccttagc tgctctgaat 2881 aaaaatttca agtaaatttg gatgtcatta attatagtta tatattcatt ttgtgacggt 2941 attaatatac attattgtag tgatagacgt gattttgaag gtgatcacca agttaggcaa 3001 ttagacaacc ttcaagactt gtgcgagata ttgctgactc acccctttta taaaacttca 3061 tggtgaatct gatagatagt cccaatttac atgatgcttt ctctttatta ttcaaagcaa 3121 gagatgttaa aggaaaaatt gaaagtttgg tgaaatacat aaaatccgat ctctccactg 3181 tcaatgcgtc tgcttttaga cccatcggtg gtgtacgagg tttggtgtat gattcaaaat 3241 tttctatttt tcaaggtaat gttcggttta acatagatga cgataaatcc atcctgaagt 3301 gtatttcagt atacttctat cacgtggatc cgtctcttct gaagaaaacc gcttataagc 3361 cagaatcctt tttcatcaca gacaactgga gagaacatct tgagaaatgg cgaaaatata 3421 tcgacatgac aatgaacgag tatttggtcg ataacaagga tgtgggttgt acatacaccg 3481 aaaaggagat caagaatcat tacccagggc aaagtgatat cagattaata actctatatc 3541 gggtgtgtaa ttcacaaggc aggttagttc ctctgcagga gtttctttct agtgagatca 3601 aaggatttga catcaaaacc gacgacgctg gtcctaccat cgcagaaggt ttaggtggaa 3661 atgatttgtt taaggagtgc ttagtggctt ttaaggatta tgttaaactg aacagttcta 3721 aagctggtct tgaaaagatc aaggtcaacc aaagatattt ttcagtttac cttgactcca 3781 tgaatagcaa taacgatcta aaaaatatct ctgacaatcc tttggttcta gcgaagttca 3841 tgttggattt tgacaattta acatcatcta cagttggttt cgcagctaat attgatgcta 3901 ttaaaaaatt ggacgtgaac tttaaggcat tttgtgaaaa ggtttttaac ttaaaaaccc 3961 gtttaagtga agacaaatta ttcataaata tgcctaagaa ctctgttgta gaagtccttg 4021 gacagcccat atcaattggg aattatatta gatcatcaaa gattccaccc ccagtgtcca 4081 attctagctc tcttcctgaa cacatagatg aattggtgtc taaagccatg tgtgatttta 4141 tgtcgcaatt tggtgaattc gaaagtaaat ttgttttgga cggtctactt ttcgtttttg 4201 gtaaattaac cacgaatgaa aagttttggc gttctgacaa actcgtgtcg ttttcaatag 4261 acaaaaaacc gatatcattt cgagcatgtg attttagaag ttatctcatc ggttcggtaa 4321 agtcaagaga tgtgttattc aattgtgaca acatcatcag acaatgggcg aatcatagag 4381 gtaatagagc tatgagatta ttcaaagtga gtggcttcaa acctggattg tttagcacag 4441 ttccaaacat actaccctgg atgagattcg atttcttcaa actgttgtca agtgattatc 4501 ttgacgatga tgagatcaag tcgcttcgaa ctctacgtct tatgaccgag cataagtcga 4561 ataagactaa ggctgacgaa cacagattca cgacatggat ctcacaacgg ttatagacaa 4621 atttggagta gaaaaggttg aagtgtatct taagttatat aatcaaatta gaatggagag 4681 agggggggtg agcaattttt tgttgagatt gatcgacaca aaggtcaaaa aatttttgga 4741 tcatgatact aagatggatt acaatgatga agagacaatt gaactactgc aatgtttgtc 4801 atcatttgtc aatatgattc catcttatta ctaaaatctc tggatcgttc tcattatcgg 4861 atgaagtagt tttgcaagaa gatactacat ttgaaataag aattttagtg cagctatcaa 4921 acaatcatgg cgagttcgag tgagaataaa acttccaaag atgatacaaa aattataagt 4981 gaacacgtgg aagatgagtc tgacaatgaa acaaagggtg tgacaaagaa agatatcgat 5041 ggtgataaca aatccaccta caatcctagg gatctgatca ccgcagatca catggatcca 5101 acgaaattga aagacatcaa ggtcttttca aatagagcag atgtgatgag tgatcaagat 5161 gaagcaacct ttgctaagtg catgaaagat tttgcaacca tagtttttgg aaaagaacct 5221 gacgagaaag aattcttaac cttttacata agcttggttc aatgttggtt aaaccagagc 5281 acgtcaatga agaacgccaa acagatgaat ctgaccaaca cactcatgca cggtgaccaa 5341 aagaagacat ggaggacggc tgactttatc aattatgtta aggggaacct tccacacgtg 5401 cccaacccgt ttcgacaata cgccagggct catgaacatg aaattgagat actgaaggca 5461 acaggaaagg tcactgttga ccatcatctt caagcgaaac atggggtatt accgcagttt 5521 tggaatgttc cagcagatta tgtcaatggt tcgttaatga acatatccga agacgatttg 5581 gcagccaatc tgttgatgaa atgccaggct ttgaaaagaa acgagaaaga aaagaaatat 5641 tataacgtgt cacaattagc accaggtggc tgtggtaatt gatggatagg gaagatttta 5701 tagatgtggg atctgatgac ttaaacacta ggagaaacgg tgtcctatgg tgtcagtcgt 5761 tcaatgcaaa cgtcaacaaa ttgaagaaat ttgagttgaa atacatatac actgatagac 5821 tgaatttaag cttatttacc ttgcagttga agtttaagct aagtcgtggg aatgtgttat 5881 atgaaatcag atttaatgat cctaagtctc gcaactttaa acaagtgggc ttaacttggt 5941 ggtcaaatgc gtttgaaaaa ttagattccg caaaaccgaa tcgcatcggc tatatcagta 6001 caatacttat ctttccggaa ggtaatgatc tgatattttc agtgaacggt ttcaggtttg 6061 tgaaactctt caaatctttt gatccaacag atttggtgat atcactcaca catccaatcc 6121 aagacattca gattgagaat gctaaggatt actgttctaa tcatgtacct tgggagagtg 6181 tgttcatgtc atgtgatcta gacaatgaaa gtattatccc aaaatcggtg aattgctacg 6241 ccttagacct taatacgaac aatgtcaaat ctttagagaa acttgcggca attgatatat 6301 cacaagtaaa atcgagtaaa gatctgaacg ttcgggaaaa gtcggatgag gtgaaaccaa 6361 aacccaaacc aaaagaggat gatagtactg aaaagaaaga tgagaggtcc aaagatggat 6421 ctgaccaaac tgagaacaaa caaaagaagg aagccgatga gaagaaaaat ccatcggaag 6481 aaccaaaaac agacccaaca gtggaagaaa aacctaggga ggtaaattcc aagttgaagg 6541 gggtagaaag ataccccata aacagacaag aattaaagaa ggtttttgag gaggctgttg 6601 agcattatgt aaagggaggt tttagtagaa gtcaagctga attgataata tttcagatgg 6661 gcgtctcatt ttgtactagc aaaaattcca tcggtgatat tcattctcac ttgttatggg 6721 aaaaggagga tggtaagatt gtgagagtga gaaaagggga gcatgtaaaa atgttatatt 6781 cgtttgtaag aacgccttgt aacattgaac gtgctatgtt gagaatgtat agctcacaaa 6841 tcttcaaact attaaaggat ggagtacttg ttcctgggtg gtctcatgtt aaaagaagaa 6901 atttcaagga ggagtgtgcc tatatggcct gcgacttcta tgatttctct tctattaaat 6961 tgtcggagca agagaagtta gcggcaaatt cggcacaaaa ttatgtcttg ttaaaggaca 7021 aacacaagcg ttctattgta aatgtgaatc aattgtggtg ataaaatgga gtttccgacc 7081 aatgacattg aacatattca agaagatgga gaggattttc cagcaatcat ttccaaaaat 7141 ttgaattcag tgttgaacgc cattcagaat cacagtctat atgatatgat catgttagac 7201 aacgcaatag aaacttgtta tacgttaata attatgtgcc aaaagcttta cgaggatgtg 7261 aatctatata gggccacaaa tcctaggact gaaagcttta ggaacgctag tgttaatgta 7321 aacacaatat taaacaataa ggataaattg ttccctaagt tatcaagctg gcaaattgat 7381 gacctggtta aacaattaat tccgattttg aattttctga aggattcaaa aacaaaaata 7441 atgaacgatt tgagggtaaa taatctattc tccgtataca gaattaatga tgttaggagt 7501 ttgttaacaa gcttacaaac tttcttaact tcatactata attttgggag aaatacagtt 7561 cctgaatttt cattgtatat agatgacagt gagaagttgg aaaaactgat taaagggtat 7621 aaatccaaaa gatacctaac taaatcagtc aggaatgaat tggttaatta tttctcaaat 7681 aatttagtgt atcaaatatc atttctattt gataacatag gaataaatat aaaaccaata 7741 aaaaattttt agggagaaaa acttaaaaac acaaaaaata aggcgttttt gattattagt 7801 ttcgtcttag agtctgccac cggctatcaa gctgagagtg gtatataaaa tctcaaaaat 7861 aacgatgact ttataattag ttatatagga agaattttct atttttatcg agtcgacact 7921 ctaaagtgtt ccaagaggaa ccaccttgag tgtctagtta taaataaact aggtc //