LOCUS AJ238578 4179 bp RNA linear VRL 15-APR-2005 DEFINITION Sleeping disease virus mRNA for polyprotein. ACCESSION AJ238578 VERSION AJ238578.1 KEYWORDS 6K protein; capsid protein; E1 glycoprotein; E2 glycoprotein; E3 glycoprotein; nsP4 protein; polyprotein. SOURCE Sleeping disease virus ORGANISM Sleeping disease virus Viruses; Riboviria; Togaviridae; Alphavirus. REFERENCE 1 (bases 1 to 4179) AUTHORS Bremont M. JOURNAL Submitted (27-APR-1999) to the INSDC. Bremont M., Unite de Virologie et Immunologie Moleculaires, Inra, Domaine de vilvert, jouy en josas, france 78352 cedex, FRANCE. REFERENCE 3 AUTHORS Villoing S., Bearzotti M., Chilmonczyk S., Castric J., Bremont M. TITLE Rainbow trout sleeping disease virus is an atypical alphavirus JOURNAL J. Virol. 74(1), 173-183(2000). PUBMED 10590104 FEATURES Location/Qualifiers source 1..4179 /organism="Sleeping disease virus" /host="rainbow trout" /mol_type="genomic RNA" /geo_loc_name="France" /db_xref="taxon:78540" CDS <1..82 /codon_start=2 /product="polyprotein" /db_xref="UniProtKB/TrEMBL:Q9Q1V1" /protein_id="CAB59729.1" /translation="TMAMATLAQDLRSYLGARGEYVSLYA" mat_peptide <1..82 /product="nsp4" CDS 118..4092 /product="polyprotein" /db_xref="GOA:Q8QL52" /db_xref="InterPro:IPR000336" /db_xref="InterPro:IPR000930" /db_xref="InterPro:IPR000936" /db_xref="InterPro:IPR002533" /db_xref="InterPro:IPR002548" /db_xref="InterPro:IPR009003" /db_xref="InterPro:IPR014756" /db_xref="InterPro:IPR036253" /db_xref="InterPro:IPR038055" /db_xref="InterPro:IPR042304" /db_xref="InterPro:IPR042305" /db_xref="InterPro:IPR042306" /db_xref="UniProtKB/Swiss-Prot:Q8QL52" /protein_id="CAB59730.1" /translation="MFPMQFTNSAYRQMEPMFAPASRGQVQPYRPRTKRRQEPQVGNA AIAALANQMSALQLQVAGLAGQARLDRPGPRLFPEKTSRRRRTLPTEKNPRRRRKKPK PPGEERERRGKSQETPGTGPGKKLGSPLSVPDRTPSPLYHDGAISGYAVLIGSRVFKP AHVKGKFDHPELADIKFQVAEVMDLEAAAYPKCMRDQAAEPATMMDGVYNGEYGNIQE WRTILYSMRAAEASRGDSGRPFTDNSGKVVGIVLGGGPDGRRTRLSVIGFDKKLKARE IAYSEAIPWTRAPALLLLPMVIACTYNSNTFDCSKPSCQDCCITAEPKKAMTMLKDNL NDPNYWDLLIAVTTCSSARKKRAVSTSPVAVYDTQILAAHAAASPYRAYCPDCDGTAC ISPIAIDEVVSSGSDHVLRIRVGSQSGVTAKGGAAGETSLRYLGRDGKVYAADNTRLV VRTTAKCDVLQATGHYILANCPVGQSLTVAATLDGTRHQCTTVFEHQVTEKFTRERSK GHHLSDLTKKCTRFSTTPKKSALYLVDVYDALPTSVEISTVVTCNERQCTVRVPPGTT VKFDKRCKNAAKETVTFTSDSQTFTCEEPVLTAASITQGKPHLRSSMLPSGGKEVKAR IPFPFPPETATCRVSIAPLPSITYEESDVLLAGTAKYPVLLTTRNLGFHSNATSEWIQ GKYLRRIPVTPQGIELMLGNNAPLHFWSSVRYASGDADAYPWELLVHHIKHHPEYAWA FVGVACGLLAVAACMFACACNRVRYSLLANTFNPNPPPLTALTAALCCIPGARADQPY LDIIAYLWTNSKVAFGLQCAAPVACMLIVTYALRHCRLCCNSFLGVRGWSALLVILAY VQSCKAYEHTVVVPMDPRAPSYEAVINRNGYDPLKLTIAVNFTVISPTTALEYWTCAG VPVVEPPHVGCCTSVSCPSDLSTLHAFTGKAVSDVHCDVHTNVYPLLWGAAHCFCSTE NTQVSAVAATVSEFCAQDSERAEAFSVHSSSVTAEILVTLGEVVTAVHVYVDGVTSAR GTDLKIVAGPITTDYSPFDRKVVRIGEEVYNYDWPPYGAGRPGTFGDIQARSTNYVKP NDLYGDIGIEVLQPTNDHVHVAYTYTTSGLLRWLQDAPKPLSVTAPHGCKISANPLLA LDCGVGAVPMSINIPDAKFTRKLKDPKPSALKCVVDSCEYGVDYGGAATITYEGHEAG KCGIHSLTPGVPLRTSVVEVVAGANTVKTTFSSPTPEVTLEVEICSAIVKCASECTPP KEHVVAARPRHGSDTGGYISGPAMRWAGRIVGNPSGPVSSSLAVTYCVVKKCRSKRIR IVKS" mat_peptide 121..972 /product="capsid" mat_peptide 973..1185 /product="e3 glycoprotein" mat_peptide 1186..2499 /product="e2 glycoprotein" mat_peptide 2500..2703 /product="6K" mat_peptide 2704..4089 /product="e1 glycoprotein" BASE COUNT 974 a 1229 c 1151 g 825 t ORIGIN 1 cacaatggcg atggccacgc tcgcccagga tctgagatcg tacttgggcg cgcgagggga 61 gtacgtatcc ctctacgcct aaccttaata ttttctgcat catactctca accaaccatg 121 tttcccatgc aattcaccaa ctcagcctat cgccagatgg agcccatgtt cgcaccggct 181 tctcgaggac aagtacagcc gtatcggccg cgcacaaagc gccgccaaga gccgcaagtc 241 ggcaacgctg ctattgctgc cctcgcgaac cagatgagcg cgctccagct gcaggtggct 301 ggacttgccg gccaggcaag gttggaccgt cctggaccga gactttttcc agaaaaaaca 361 agcagaagaa gaagaactct tccaacggag aaaaaccccc ggagaagaag aaagaagcca 421 aaaccacctg gagaagaaag ggaacggcgg ggaaaaagcc aagaaacccc cggaaccggc 481 cccggaaaga agttaggatc tccgttaagc gtgcccgaca gaacaccttc cccgttgtac 541 catgacggtg ccatatccgg ctatgcggtg ctgattggct cccgcgtgtt taagccagcg 601 cacgtgaagg gtaagttcga ccaccccgaa ctggcggaca tcaagttcca ggtcgccgag 661 gtcatggacc tcgaagcagc cgcataccct aagtgcatgc gagaccaggc ggctgaacca 721 gcaaccatga tggatggagt gtacaatggg gagtacggca atattcagga gtggaggaca 781 attttgtatt cgatgcgagc ggcagaggca agccggggtg acagtggcag gccattcacc 841 gacaactcag gaaaggttgt cggtatcgtc ctcggaggag gacccgatgg taggcgcaca 901 cgtctctccg tgataggttt cgacaagaag ctgaaggcca gagagatcgc ctacagcgag 961 gccatccctt ggacacgcgc accagctctc ctgctgctgc ctatggtcat cgcctgcacc 1021 tacaactcca atacctttga ttgctccaaa ccgtcctgcc aggattgttg cattactgct 1081 gaaccaaaga aggccatgac tatgctgaag gacaacctga atgacccgaa ctactgggac 1141 ctgctcattg ccgtcaccac ctgcagttcc gcccgaaaaa agagggctgt gtctacgtcg 1201 cctgtcgccg tttacgacac acaaattctc gccgcccacg cagctgcctc cccgtatagg 1261 gcgtactgcc ccgattgtga cggaactgcc tgcatctcgc cgatagctat cgacgaggtg 1321 gtaagtagcg gtagtgacca cgtccttcgc atccgggtcg gttctcaatc gggagtgacc 1381 gctaaaggcg gtgcggcggg tgaaacctct ctgcgatacc tgggaaggga cggtaaggtt 1441 tacgccgcgg acaacacgcg gctcgtggtg cgcaccactg caaagtgtga cgtgctgcag 1501 gccactggcc actacattct ggccaactgc ccagtggggc agagtctcac tgttgcggcc 1561 acactggacg gtacccggca tcaatgcacc acggttttcg aacatcaagt aacggagaag 1621 ttcacaagag aacgcagcaa gggccaccac ctgtccgatc tgaccaagaa atgcaccagg 1681 ttctccacca ccccgaagaa gtccgcgctc tatctcgttg atgtgtatga tgctctgccg 1741 acttctgtag agatcagcac cgtggtgaca tgcaacgaaa gacagtgcac agtgagggtg 1801 ccacccggta ccacagtgaa attcgataag aggtgcaaga acgctgccaa agagaccgtc 1861 accttcacca gcgactccca gacgtttacg tgcgaggagc cggtcctaac ggccgccagc 1921 atcacccagg gcaagccgca cctcagatcg tcaatgttgc ccagcggagg caaagaggtg 1981 aaagcgagga ttccattccc gttcccgcca gagactgcga cttgcagagt gagcatcgcc 2041 ccactgccat cgattaccta tgaggaaagc gatgttctgc tggccggcac tgcgaaatac 2101 cccgtgctgc taactacacg gaaccttggt ttccatagca acgccacatc tgaatggatc 2161 cagggtaagt acctgcgccg catcccggtc acgccccaag ggattgaact aatgttggga 2221 aacaacgcac cgctgcactt ctggtcatct gtcaggtacg catctggaga cgccgacgcg 2281 tacccctggg aacttctggt gcaccacatc aagcaccatc cggagtacgc gtgggcgttt 2341 gtaggagttg catgtggcct gctggccgtt gcagcatgca tgttcgcgtg cgcatgcaac 2401 agggtgcggt actctctgct cgccaacacg ttcaacccga acccaccacc attgaccgca 2461 ctgactgcag cattgtgctg catacctggg gctcgcgcgg atcaacccta cctggacatc 2521 attgcctact tgtggaccaa cagcaaagtg gccttcgggc tgcaatgcgc ggcgcccgtg 2581 gcttgcatgc tcatcgttac atacgccctt agacattgca gattgtgctg caattctttt 2641 ttaggggtaa gagggtggtc ggctctgctg gtcatccttg cgtatgtaca gagctgcaag 2701 gcgtacgaac acaccgtggt ggtcccaatg gatccaagag ccccgtcgta cgaggcggtg 2761 ataaaccgga atgggtatga ccccctgaag cttaccatcg cagtgaactt taccgtcatc 2821 tcaccaacta cggctctgga atactggacc tgtgcaggag tccctgtcgt cgagccgccc 2881 catgtgggct gctgcacgtc agtgtcctgc ccctccgacc tctccacgct gcacgcgttc 2941 accggcaaag ccgtctccga cgtgcactgc gatgtgcaca cgaacgtgta ccccttgttg 3001 tggggtgcgg ctcactgctt ctgttccact gaaaacacgc aggtcagcgc tgtggccgcc 3061 accgtttctg agttctgtgc tcaggactca gagcgcgccg aggcgttcag cgttcacagc 3121 agctcagtca ctgcagagat tctggtgacg cttggtgaag tggtgacggc ggtccacgtt 3181 tacgtggacg gggtaacatc agccaggggt accgacctca agatcgtggc tggcccaata 3241 acaactgact actccccgtt tgaccgcaaa gtagtccgta tcggcgaaga ggtctataat 3301 tacgactggc ctccttacgg ggctggtcga ccaggcacat tcggagacat tcaagctagg 3361 tcaaccaact atgtcaaacc caatgatctg tacggggaca tcggaattga agtactgcag 3421 ccgactaatg accacgtgca cgtggcttac acgtatacga cctctgggtt gctgcgttgg 3481 ttgcaggacg ctccgaaacc actcagtgtc acagcaccgc acggttgtaa gatcagtgct 3541 aacccgctcc tggccctcga ttgtggggtt ggtgccgtcc ccatgtccat caacattccg 3601 gacgcgaagt tcacccgcaa actaaaggac ccgaaacctt cggccctgaa atgcgtggtg 3661 gacagttgcg agtacggggt ggactacggg ggcgccgcca cgatcaccta cgagggccac 3721 gaggctggga agtgcgggat ccattccctg acaccaggag tccctctgag aacatcagtg 3781 gttgaagtag ttgccggcgc taataccgtc aaaacgacct tctcctcacc cacgcccgag 3841 gttacactcg aggtagagat ctgttcggca atagtgaagt gcgccagtga gtgcactcca 3901 ccgaaggaac acgtagtcgc agccaggcct cgccatggca gcgacactgg aggctacatc 3961 tccgggcccg caatgcgctg ggccggaagg attgtaggga accctagtgg tcctgtttcc 4021 tcatccttgg ccgtcaccta ctgcgtggtg aagaagtgcc gctctaaaag aatccggata 4081 gtcaagagct aaattccggt atacaaatcg ctcactagga gcccatccga acccacaggg 4141 agtaggatga gtcatctatt ggtttttaaa attttcaat //