LOCUS AH002362 2103 bp DNA linear VRL 25-AUG-2016
DEFINITION Human alphaherpesvirus 3 sequence.
ACCESSION AH002362 M29629 M29630 M29631
VERSION AH002362.2
KEYWORDS .
SOURCE Human alphaherpesvirus 3 (HHV-3)
ORGANISM Human alphaherpesvirus 3
Viruses; Duplodnaviria; Heunggongvirae; Peploviricota;
Herviviricetes; Herpesvirales; Orthoherpesviridae;
Alphaherpesvirinae; Varicellovirus; Varicellovirus humanalpha3.
REFERENCE 1 (bases 1 to 2103)
AUTHORS Davison,A.J.
TITLE Structure of the genome termini of varicella-zoster virus
JOURNAL J. Gen. Virol. 65 (Pt 11), 1969-1977 (1984)
PUBMED 6094711
COMMENT On or before Aug 25, 2016 this sequence version replaced M29629.1,
M29630.1, M29631.1, AH002362.1.
FEATURES Location/Qualifiers
source 1..2103
/organism="Human alphaherpesvirus 3"
/mol_type="genomic DNA"
/db_xref="taxon:10335"
misc_feature 1..2103
/note="Original segmented set titles: Varicella-zoster
virus (VZV) DNA, 5' end.; Varicella-zoster virus (VZV)
DNA, L-S joint.; Varicella-zoster virus (VZV) DNA, S
terminus."
repeat_region 1..88
/note="5' terminal repeat"
misc_feature 89..>892
/note="U-L region"
gap 893..992
/estimated_length=unknown
repeat_region 1331..1419
/note="IR-L region"
repeat_region 1420..>1711
/note="IR-S region"
gap 1712..1811
/estimated_length=unknown
BASE COUNT 402 a 584 c 502 g 415 t
ORIGIN
1 aggccagccc tctcgcggcc ccctcgagag agaaaaaaaa aagcgacccc acctccccgc
61 gcgtttgcgg ggcgaccatc gggggggatg ggattttttg ccgggaaacc cccccccccc
121 agcctttaac aaaacccgcg ccttttgcgt ccacccctcg tttactgctc ggatggcgac
181 cgtgcactac tcccgccgac ctgggacccc gccggtcacc ctcacgtcgt cccccagcat
241 ggatgacgtt gcgaccccca tcccctacct acccacatac gccgaggccg tggcagacgc
301 gcccccccct tacagaagcc gcgagagtct ggtgttctcc ccgcctcttt ttcctcacct
361 ggagaatggc accacccaac agtcttacga ttgcctagac tgcgcttatg atggaatcca
421 cagacttcag ctggcttttc taagaattcg caaatgctgt gtaccggctt ttttaatttt
481 ttttggtatt ctcaccctta ctgctgtcgt ggtcgccatt gttgccgttt ttcccgagga
541 acctcccaac tcaactacat gaaactactg tccggaaggg gaaggtattt attctcgctt
601 gcagcttgtc gcgcgtgtat gcacaacaaa agctatatat gtcaccaaag ccaacgtcgc
661 catctggagt actacaccca gtacgttgca taacctgtcc atttgcattt tcagttgccc
721 ggacgccttt ctccgggatc gtggccttgg gacatcaacc agtggaataa gaaccgccgg
781 tggtcttgtt tgaacgacga gtggcgacgc gttgttctgc ataagctctg tatgctgata
841 cataaacaca gagtctgtat cgctatcaga ttcccgaaca ccttccggta ccnnnnnnnn
901 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
961 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnggtaccaa cgaagacaca cccctatatc
1021 cctccaccca tttcttttaa gtcccaccca ctaaaacgtg ggtataaaat gtgtattggg
1081 gtaggcggac agtcccaaca aacagggaag ttgattggta taaccttggg ccgggtatac
1141 agctaagtga cattttagat tctgtcttta tttagataaa gagcgatacg aagacatttc
1201 tccacccccc tgtaataccc gtaaataaag gaagtccaca aacaaaagca ctgtatatag
1261 gaagtcgggt gtattgggac agttactcca ttagaggcgt acaaacaata ctgggatagg
1321 gtaatgcaag tcccccccga tggtcgcccc gcaaacgcgc ggggaggtgg ggtcgctttt
1381 ttttttctct ctcgaggggg ccgcgagagg gctggcctcc tctcccgggg tccgccgggc
1441 gcccagaaac cggggggggg ttattttcgg aggggggtcc gaccagcccg cccgtcgccc
1501 gcccgcacag acagacagac acttttttca taaaaaccgt tccgctttta ttaacaacaa
1561 acagtccgcg cgccagtggc gctcacgaga aaaggagggg actccgtcac ccccgactct
1621 gcggggggct cctccccccg cgccctcccc acacatcgtc ctcgtcctcg gaggacgagg
1681 acgaggacaa cagctccacc ttgaccgccg cnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
1741 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
1801 nnnnnnnnnn nccggcggtc aaggtggagc tgttgtcctc gtcctcgtcc tccgaggacg
1861 aggacgatgt gtggggaggg cgcgggggga ggagcccccc gcagagtcgg gggtgacgga
1921 gtcccctcct tttctcgtga gcgccactgg cgcgcggact gtttgttgtt aataaaagcg
1981 gaacggtttt tatgaaaaaa gtgtctgtct gtctgtgcgg gcgggcgacg ggcgggctgg
2041 tcggaccccc cccgaaaata accccccccc ggtttctggg cgcccggcgg accccgggag
2101 agg
//