LOCUS AF370287 1836 bp mRNA linear PLN 20-JUL-2016 DEFINITION Arabidopsis thaliana putative trehalose-6-phosphate synthase (At1g78580) mRNA, partial cds. ACCESSION AF370287 VERSION AF370287.1 KEYWORDS FLI_CDNA. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 1836) AUTHORS Yamada,K., Liu,S.X., Sakano,H., Pham,P.K., Banh,J., Chung,M.K., Goldsmith,A.D., Lee,J.M., Quach,H.L., Toriumi,M., Yu,G., Bowser,L., Carninci,P., Chen,H., Cheuk,R., Hayashizaki,Y., Ishida,J., Jones,T., Kamiya,A., Karlin-Neumann,G., Kawai,J., Kim,C., Lam,B., Lin,J., Miranda,M., Narusaka,M., Nguyen,M., Palm,C.J., Sakurai,T., Satou,M., Seki,M., Shinn,P., Southwick,A., Shinozaki,K., Davis,R.W., Ecker,J.R. and Theologis,A. TITLE Arabidopsis Full Length cDNA Clones JOURNAL Unpublished REFERENCE 2 (bases 1 to 1836) AUTHORS Yamada,K., Liu,S.X., Sakano,H., Pham,P.K., Banh,J., Chung,M.K., Goldsmith,A.D., Lee,J.M., Quach,H.L., Tang,C.C., Toriumi,M., Yu,G., Bowser,L., Carninci,P., Chen,H., Cheuk,R., Hayashizaki,Y., Ishida,J., Jones,T., Kamiya,A., Karlin-Neumann,G., Kawai,J., Kim,C., Koesema,E., Lam,B., Lin,J., Meyers,M.C., Miranda,M., Narusaka,M., Nguyen,M., Palm,C.J., Sakurai,T., Satou,M., Seki,M., Shinn,P., Southwick,A., Shinozaki,K., Davis,R.W., Ecker,J.R. and Theologis,A. TITLE Direct Submission JOURNAL Submitted (18-APR-2001) Plant Gene Expression Center, 800 Buchanan Street, Albany, CA 94710, USA COMMENT RIKEN Genomic Sciences Center (GSC) members carried out the collection and clustering of RAFL cDNAs (RAFL cDNA : 'RIKEN Arabidopsis Full-Length cDNA'): Seki,M., Narusaka,M., Ishida,J., Satou,M., Kamiya,A., Sakurai,T., Carninci,P., Kawai,J., Hayashizaki,Y. and Shinozaki,K. The Salk, Stanford, PGEC (SSP) Consortium members carried out the sequencing and annotation of the RAFL cDNAs: Yamada,K., Liu,S.X., Sakano,H., Pham,P.K., Banh,J., Chung,M.K., Goldsmith,A.D., Lee,J.M., Quach,H.L., Tang,C.C., Toriumi,M., Yu,G., Bowser,L., Chen,H., Cheuk,R., Jones,T., Karlin-Neumann,G., Kim,C., Koesema,E., Lam,B., Lin,J., Meyers,M.C., Miranda,M., Nguyen,M., Palm,C.J., Shinn,P., Southwick,A., Davis,R.W., Ecker,J.R. and Theologis,A. Yamada,K. (SSP/PGEC) and Seki,M. (RIKEN GSC) contributed equally to this work. Shinozaki,K. (RIKEN GSC) and Theologis,A. (SSP/PGEC) contributed equally to this work as PIs. Annotation is based on the January 2002 version of the Arabidopsis genome submitted to GenBank. FEATURES Location/Qualifiers source 1..1836 /organism="Arabidopsis thaliana" /mol_type="mRNA" /db_xref="taxon:3702" /chromosome="1" /clone="RAFL04-14-I21 (R09785)" /ecotype="Columbia" /note="This clone is in a modified pBluescript vector (Lambda ZAP) as a XhoI/SstI insert." gene <1..1836 /gene="At1g78580" CDS <1..1665 /gene="At1g78580" /experiment="experimental evidence, no additional details recorded" /codon_start=1 /product="putative trehalose-6-phosphate synthase" /protein_id="AAK44102.2" /translation="ENANWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFG TLTAVPIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQEAKKGVLIL SEFAGAAQSLGAGAILVNPWNITEVAASIGQALNMTAEEREKRHRHNFHHVKTHTAQE WAETFVSELNDTVIEAQLRISKVPPELPQHDAIQRYSKSNNRLLILGFNATLTEPVDN QGRRGDQIKEMDLNLHPELKGPLKALCSDPSTTIVVLSGSSRSVLDKNFGEYDMWLAA ENGMFLRLTNGEWMTTMPEHLNMEWVDSVKHVFKYFTERTPRSHFETRDTSLIWNYKY ADIEFGRLQARDLLQHLWTGPISNASVDVVQGSRSVEVRAVGVTKGAAIDRILGEIVH SKSMTTPIDYVLCIGHFLGKDEDVYTFFEPELPSDMPAIARSRPSSDSGAKSSSGDRR PPSKSTHNNNKSGSKSSSSSNSNNNNKSSQRSLQSERKSGSNHSLGNSRRPSPEKISW NVLDLKGENYFSCAVGRTRTNARYLLGSPDDVVCFLEKLADTTSSP" 3'UTR 1666..1836 /gene="At1g78580" BASE COUNT 578 a 393 c 397 g 468 t ORIGIN 1 gaaaatgcaa actggcgtga taaagtggtc ttattgcaaa ttgcggtgcc aacaagaact 61 gacgttcctg agtatcaaaa actcacaagc caagttcatg aaattgttgg acgcattaat 121 ggtcgttttg ggacactgac tgcagttcca atacatcatc tggatcggtc tctggacttt 181 catgctttat gtgcacttta tgccgtcaca gatgttgcgc ttgtaacatc tttgagagat 241 gggatgaatc ttgtcagtta tgagtttgtt gcttgccaag aggccaaaaa gggcgtcctc 301 attctcagtg aatttgcagg tgctgcacag tctctgggtg ctggagctat tcttgtgaat 361 ccttggaaca tcacagaagt tgctgcctcc attggacaag ccctaaacat gacagctgaa 421 gaaagagaga aaagacatcg ccataatttt catcatgtca aaactcacac tgctcaagaa 481 tgggctgaaa cttttgtcag tgaactaaat gacactgtaa ttgaggcgca actacgaatt 541 agtaaagtcc caccagagct tccacagcat gatgcaattc aacggtattc aaagtccaac 601 aacaggcttc taatcctggg tttcaatgca acattgactg aaccagtgga taatcaaggg 661 agaagaggtg atcaaataaa ggagatggat cttaatctac accctgagct taaagggccc 721 ttaaaggcat tatgcagtga tccaagtaca accatagttg ttctgagcgg aagcagcaga 781 agtgttttgg acaaaaactt tggagagtat gacatgtggc tggcagcaga aaatgggatg 841 ttcctaaggc ttacgaatgg agagtggatg actacaatgc cagaacactt gaacatggaa 901 tgggttgata gcgtaaagca tgttttcaag tacttcactg agagaactcc caggtcacac 961 tttgaaactc gcgatacttc gcttatttgg aactacaaat atgcagatat cgaattcggg 1021 agacttcaag caagagattt gttacaacac ttatggacag gtccaatctc taatgcatca 1081 gttgatgttg tccaaggaag ccgctctgtg gaagtccgtg cagttggtgt cacaaaggga 1141 gctgcaattg atcgtattct aggagagata gtgcatagca agtcgatgac tacaccaatc 1201 gattacgtct tgtgcattgg tcatttcttg gggaaggacg aagatgttta cactttcttc 1261 gaaccagaac ttccatccga catgccagcc attgcacgat ccagaccatc atctgacagt 1321 ggagccaagt catcatcagg agaccgaaga ccaccttcaa agtcgacaca taacaacaac 1381 aaaagtggat caaaatcctc atcatcctct aactctaaca acaacaacaa gtcctcacag 1441 agatctcttc agtcagagag aaaaagtgga tccaaccata gcttaggaaa ctcaagacgt 1501 ccttcaccag agaagatctc atggaatgtg cttgacctca aaggagagaa ctacttctct 1561 tgcgctgtgg gtcgtactcg caccaatgct agatatctcc ttggctcacc tgacgacgtc 1621 gtttgcttcc ttgagaagct cgctgacacc acttcctcac cttaatatcc cgagacagtg 1681 tcaagtgagt tcatgtaacc caataaaaac tattgttttg taacaaaaag cagccattac 1741 cagactcttt agtggtttga ttctaatata ataagagtag agcaacttat gacacaaatg 1801 agaacaagct cttattacat aaaaaaaaaa aaaaaa //