LOCUS AF339908 4060 bp DNA linear PLN 27-APR-2001 DEFINITION Arabidopsis thaliana RNA helicase SDE3 (SDE3) gene, complete cds. ACCESSION AF339908 VERSION AF339908.1 KEYWORDS . SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 4060) AUTHORS Dalmay,T., Horsefield,R., Braunstein,T.H. and Baulcombe,D.C. TITLE SDE3 encodes an RNA helicase required for post-transcriptional gene silencing in Arabidopsis JOURNAL EMBO J. 20 (8), 2069-2078 (2001) PUBMED 11296239 REFERENCE 2 (bases 1 to 4060) AUTHORS Dalmay,T. and Baulcombe,D.C. TITLE Direct Submission JOURNAL Submitted (24-JAN-2001) The Sainsbury Laboratory, John Innes Center, Colney Lane, Norwich, Norfolk NR 4 7UH, UK FEATURES Location/Qualifiers source 1..4060 /organism="Arabidopsis thaliana" /mol_type="genomic DNA" /db_xref="taxon:3702" /chromosome="1" /map="between PUV4 and CAT3a" gene 240..4048 /gene="SDE3" mRNA join(240..1361,1450..1614,1730..3184,3275..4048) /gene="SDE3" /product="RNA helicase SDE3" CDS join(579..1361,1450..1614,1730..3184,3275..3880) /gene="SDE3" /codon_start=1 /product="RNA helicase SDE3" /protein_id="AAK40099.1" /translation="MSVSGYKSDDEYSVIADKGEIGFIDYQNDGSSGCYNPFDEGPVV VSVPFPFKKEKPQSVTVGETSFDSFTVKNTMDEPVDLWTKIYASNPEDSFTLSILKPP SKDSDLKERQCFYETFTLEDRMLEPGDTLTIWVSCKPKDIGLHTTVVTVDWGSDRVER VVFLLAEDKISSSLTSNRPYSRSRRAPKKDFAVDDYVKGSRPSKVVERSFRNRLPLYE IPKEIREMIENKEFPDDLNEGLTARNYANYYKTLLIMEELQLEEDMRAYDMENVSMKR RGIYLSLEVPGLAERRPSLVHGDFIFVRHAYDDGTDHAYQGFVHRVEADEVHLKFASE FHQRHTAGSVYNVRFTYNRINTRRLYQAVDAAEMLDPNFLFPSLHSGKRMIKTKPFVP ISPALNAEQICSIEMVLGCKGAPPYVIHGPPGTGKTMTLVEAIVQLYTTQRNARVLVC APSNSAADHILEKLLCLEGVRIKDNEIFRLNAATRSYEEIKPEIIRFCFFDELIFKCP PLKALTRYKLVVSTYMSASLLNAEGVKRGHFTHILLDEAGQASEPENMIAVSNLCLTE TVVVLAGDPRQLGPVIYSRDAESLGLGKSYLERLFECDYYCEGDENYVTKLVKNYRCH PEILDLPSKLFYDGELVASKEETDSVLASLNFLPNKEFPMVFYGIQGCDEREGNNPSW FNRIEISKVIETIKRLTANDCVQEEDIGVITPYRQQVMKIKEVLDRLDMTEVKVGSVE QFQGQEKQVIIISTVRSTIKHNEFDRAYCLGFLSNPRRFNVAITRAISLLVIIGNPHI ICKDMNWNKLLWRCVDNNAYQGCGLPEQEEFVEEPFKQEGSSNGPQYPPEAEWNNSGE LNNGGANENGEWSDGWNNNGGTKEKNEWSDGWNSNGGGTKKKDEWSDGWDNNGGTNGI NQEGSSNAPQDPQEAEWNDSGEVKNGGTKEKDVRSDGWNNNGGKNEKEECCDGWKDGG SGEEIKNGGKFETRGDFVGKEEDEWSDGWK" BASE COUNT 1187 a 729 c 930 g 1214 t ORIGIN 1 tcttatttat ttgattaaat atgcatctgt ccaattataa ttattacggc tccaaaggtc 61 aattcttaga attaccgttg taattaacaa cgattgggct taacatatac ctcttaggcc 121 cataacatat acaaaaccca aaaggcccaa atgtttgatg cacgtgcttt acttgagcga 181 attaattccc aatttcagca attttaattt ttctacgact cttcagtctt cactcactct 241 tttcatgttt cttctccttt gaagcctgcc tgcgttagtc tggcttcatt gcttctccat 301 ttcttggtgt gatcgaatca aagagtgtaa cccattttgc tactgattca gtacgtatga 361 tcaattctct caatttcagt taatctcatg ctcaatttcg ttttctgtgt tagggttttg 421 ggtttttgtt atgctctgag tctagttcac gctactcgaa ttccaataca atcctcttag 481 cgtcatgttg tgatcattac attgtggttc aaaatgtgta atttgtttat aatcgatatg 541 tgttgtgttt atgttacaga ttgtcatcat catcagcaat gagtgtgagt ggatacaaat 601 cggatgacga atattctgta atcgcagaca agggagagat tggatttata gactatcaga 661 atgatggatc ttctggttgc tacaatccat ttgatgaagg tccagttgtt gtttctgttc 721 ctttcccatt taagaaagag aagcctcaat ctgtaactgt tggagagact tcttttgatt 781 ccttcactgt caagaacact atggatgagc ctgttgatct ctggactaag atttacgcat 841 ctaaccctga ggattctttt actctctcga tattgaaacc gccttcgaaa gattcagact 901 tgaaagagag acagtgtttt tatgaaactt ttactctgga agataggatg cttgagcctg 961 gtgacacttt gaccatttgg gtgtcttgta agcctaagga cattggttta cataccactg 1021 ttgttactgt tgactgggga agtgataggg ttgagcgggt tgttttcctt ttggctgagg 1081 ataagatttc gagttctctg acttctaaca ggccttactc tagaagtaga agggctccga 1141 agaaagattt tgctgtggat gattatgtga agggatcacg cccttcaaag gtggttgaac 1201 gtagttttag aaataggctt cctctgtatg aaattccaaa ggagattaga gagatgatcg 1261 agaataagga attccctgat gatttgaacg aaggtcttac agcaaggaac tatgctaact 1321 actataaaac tttactgatt atggaagaat tacaactcga ggtatcctca ttgtttcaga 1381 tttttgttaa taactcaata aacctcttgt agcatgaatc atgtttcttg taattttttg 1441 gttgtttagg aagacatgcg agcttatgat atggagaatg tttcaatgaa gagaaggggt 1501 atctatttgt ccctcgaagt tcctggcctt gctgagagaa gaccttccct tgtccatgga 1561 gacttcatct ttgttagaca tgcatatgat gatggaactg accacgctta tcaggttttg 1621 ttctcgcttt actttctcat actttcagat cactttctgc ttcacaactg caaatatgtt 1681 taatcattta tcttttagag gatacaaaat tgaaatcaat ttctcacagg gctttgtaca 1741 ccgcgtagag gcggatgaag tacatttgaa gtttgcctct gagttccacc aacgccacac 1801 agctgggagt gtctataatg tgaggttcac atacaatcga atcaacacta gaaggttgta 1861 tcaggctgtt gatgcggcag aaatgttgga tccaaacttc cttttcccat ccttgcactc 1921 tgggaaaagg atgataaaga caaaaccctt tgtgcccatt tcaccagctc ttaatgcaga 1981 gcagatttgt tccattgaaa tggttcttgg ctgcaaagga gcaccaccat atgtaatcca 2041 tggacctcct ggtactggga aaaccatgac attggtggag gctatagttc aactttatac 2101 aacacagaga aatgctcggg ttcttgtctg tgctccctcc aatagtgcag ctgatcacat 2161 tttagagaaa ctcctttgtt tagagggagt tcgcatcaag gacaatgaga ttttcaggct 2221 gaatgcagct actcgttcat atgaagaaat taagcctgag attatccgct tttgcttctt 2281 tgatgagtta attttcaagt gcccccctct caaagctttg actcgttaca aactcgttgt 2341 gtcaacatat atgagtgcat cgcttcttaa cgcggaaggt gtaaagcgtg gtcacttcac 2401 tcatattctc ttagatgagg ctggtcaagc ttcagagcct gaaaacatga ttgctgtatc 2461 aaatctctgc ttgacagaaa ctgtggttgt gcttgctgga gatccaaggc aattgggtcc 2521 ggttatatac tcaagagatg ctgagtcact cggcttgggg aagtcatact tggaaagatt 2581 gtttgagtgt gattattact gcgaagggga tgagaattat gtaacaaagc tagtcaagaa 2641 ctacagatgc cacccagaga ttcttgatct cccgtcaaag ctgttctatg atggagaact 2701 ggtagcttcc aaagaagaga cagactctgt tcttgcctcg ttaaacttcc ttccaaacaa 2761 agaatttccg atggttttct atgggatcca aggatgcgat gagagggaag gtaacaatcc 2821 gtcctggttc aaccgtatag agatcagcaa agttatagag acaatcaaga gattaacagc 2881 gaatgactgt gtgcaagaag aggatatcgg agttataact ccttacaggc agcaagtaat 2941 gaagatcaag gaggttcttg acaggttaga tatgactgaa gtcaaagttg gtagtgtaga 3001 gcaattccaa ggtcaagaga aacaggtcat catcatttca actgtaagat ctactatcaa 3061 acacaacgag ttcgatagag cctattgtct gggcttccta agcaatccaa ggaggtttaa 3121 tgtcgccata acccgtgcaa tctctctgct agtgatcatc ggaaacccac atatcatatg 3181 caaggtacca cttacttagt tgttctggac aaagacataa tgcgttgaca tcattcccaa 3241 tctctcaact aataaaacgt attatatgaa acaggacatg aactggaaca agcttttgtg 3301 gcgatgtgtg gataacaatg cttaccaagg atgcggttta ccagagcagg aggagtttgt 3361 ggaggaacca ttcaagcaag aaggaagcag caatgggcct caataccctc cagaagctga 3421 gtggaacaac agtggagagc tcaacaatgg tggtgcgaat gagaatggtg aatggtctga 3481 tgggtggaac aacaatggcg gcacaaagga aaaaaatgaa tggtctgatg gatggaacag 3541 caatggtggt gggacaaaga agaaagatga atggtctgat gggtgggaca acaatggcgg 3601 cacaaacggg atcaatcaag aaggaagcag caacgctccc caagaccctc aagaagctga 3661 gtggaacgat agtggcgagg tcaagaatgg tggcacaaag gagaaagatg tcaggtctga 3721 tgggtggaac aacaatggcg gaaaaaatga aaaagaagaa tgttgtgatg gttggaaaga 3781 cggcggcagt ggtgaagaga tcaagaatgg tggtaagttt gaaaccagag gtgattttgt 3841 aggcaaggaa gaagatgagt ggtctgatgg gtggaagtaa attaaaaaaa aaagtagagt 3901 aataagggtt aattgtaggt ggatggacaa aaggctattt tggatttgtt catattttct 3961 ttctatctct caacctttgg tttttgcaga gtctcgtttt taaatgcatg atttggtgtg 4021 tataaaatta aggaaactgt tttattaata gggctatcaa //