LOCUS AF311944 6394 bp DNA linear BCT 15-JAN-2002 DEFINITION Methanopyrus kandleri putative methyl coenzyme M reductase system component A2, putative phosphotransferase, putative endonuclease V, topoisomerase V (top5), and putative NifS protein genes, complete cds. ACCESSION AF311944 VERSION AF311944.2 KEYWORDS . SOURCE Methanopyrus kandleri ORGANISM Methanopyrus kandleri Archaea; Euryarchaeota; Methanomada group; Methanopyri; Methanopyrales; Methanopyraceae; Methanopyrus. REFERENCE 1 (bases 2124 to 5078) AUTHORS Belova,G.I., Prasad,R., Kozyavkin,S.A., Lake,J.A., Wilson,S.H. and Slesarev,A.I. TITLE A type IB topoisomerase with DNA repair activities JOURNAL Proc. Natl. Acad. Sci. U.S.A. 98 (11), 6015-6020 (2001) PUBMED 11353838 REFERENCE 2 (bases 1 to 6394) AUTHORS Belova,G.I., Malykh,A., Kozyavkin,S.A. and Slesarev,A.I. TITLE Direct Submission JOURNAL Submitted (09-OCT-2000) Fidelity Systems, Inc, 7961 Cessna Avenue, Gaithersburg, MD 20879, USA REFERENCE 3 (bases 1 to 6394) AUTHORS Belova,G.I., Malykh,A., Kozyavkin,S.A. and Slesarev,A.I. TITLE Direct Submission JOURNAL Submitted (14-JUN-2001) Fidelity Systems, Inc, 7961 Cessna Avenue, Gaithersburg, MD 20879, USA REMARK Sequence update by submitter COMMENT On Jan 15, 2002 this sequence version replaced AF311944.1. FEATURES Location/Qualifiers source 1..6394 /organism="Methanopyrus kandleri" /mol_type="genomic DNA" /db_xref="taxon:2320" CDS complement(1..690) /codon_start=1 /transl_table=11 /product="putative methyl coenzyme M reductase system component A2" /protein_id="AAL61956.1" /translation="MSWVIRVEDLVKEFEDFRLEIPELEIGEGEVLGVLGESGAGKSV FIHVLKGLDDYEPDEGRILYRVGMCPECGWIERPEFIGEQCPKCEKGKLEEEVVDLWG LSDTERRRFRKRIAIMFQRTFALYEEQTVLENVMEALEEAGYSGEEAVQRAVDLIEMV QLEHRITHLARDLSGGEKQRVVLIRQLAKKPIVFLADEPTGTLDPETADIVHKALREG VKEEGITMVIR" CDS 766..1470 /inference="non-experimental evidence, no additional details recorded" /note="conserved hypothetical protein" /codon_start=1 /transl_table=11 /product="putative phosphotransferase" /protein_id="AAL61957.1" /translation="MKPIRVCPECGKYTEKHTCERCGRRTEEFLDGRRRLALSKLLSG ILRHFPEEVKVKLDDEGFTDCDVHELAERIKKYWKNREYYRWLTGEHIIAVVETCPKG RFEIDEHGRIRARYGHSRRLSVRPTLPEAENVKELYHGTARENLESILQHGIKPMGRR AVHLTDDEREALITALRHTRNPVILVVDAERLRRHGLVPRKAGKNVYVVEGTVPPDCI TRVIRNPRRSVESEKR" CDS 1457..2146 /note="deoxyinosine 3'-endonuclease" /codon_start=1 /transl_table=11 /product="putative endonuclease V" /protein_id="AAL61958.1" /translation="MKSAEWFEASTEEERVEIQRKVARKVRLEPLDDVDAVAGVDVSY RGEEYRAAAVVLDPETYEVLDRRVVHGTTDVPYEPGFLAFREGPPALEALEGLDFDLL FVHGHGVAHPRRAGLASHLGVALDVPTIGVARRPLVGRSKEEPSRIGDTTPLVHRGEV VGYLVRTDAEARPVVVSPGHRCNLEDAVRWTLRLVRVGKWPEPLRLADLLSRRGASRV EGESRGAGVRR" gene 2121..5078 /gene="top5" CDS 2124..5078 /gene="top5" /note="type IB DNA topoisomerase" /codon_start=1 /transl_table=11 /product="topoisomerase V" /protein_id="AAK60014.1" /translation="MALVYDAEFVGSEREFEEERETFLKGVKAYDGVLATRYLMERSS SAKNDEELLELHQNFILLTGSYACSIDPTEDRYQNVIVRGVNFDERVQRLSTGGSPAR YAIVYRRGWRAIAKALDIDEEDVPAIEVRAVKRNPLQPALYRILVRYGRVDLMPVTVD EVPPEMAGEFERLIERYDVPIDEKEERILEILRENPWTPHDEIARRLGLSVSEVEGEK DPESSGIYSLWSRVVVNIEYDERTAKRHVKRRDRLLEELYEHLEELSERYLRHPLTRR WIVEHKRDIMRRYLEQRIVECALKLQDRYGIREDVALCLARAFDGSISMIATTPYRTL KDVCPDLTLEEAKSVNRTLATLIDEHGLSPDAADELIEHFESIAGILATDLEEIERMY EEGRLSEEAYRAAVEIQLAELTKKEGVGRKTAERLLRAFGNPERVKQLAREFEIEKLA SVEGVGERVLRSLVPGYASLISIRGIDRERAERLLKKYGGYSKVREAGVEELREDGLT DAQIRELKGLKTLESIVGDLEKADELKRKYGSASAVRRLPVEELRELGFSDDEIAEIK GIPKKLREAFDLETAAELYERYGSLKEIGRRLSYDDLLELGATPKAAAEIKGPEFKFL LNIEGVGPKLAERILEAVDYDLERLASLNPEELAEKVEGLGEELAERVVYAARERVES RRKSGRQERSEEEWKEWLERKVGEGRARRLIEYFGSAGEVGKLVENAEVSKLLEVPGI GDEAVARLVPGYKTLRDAGLTPAEAERVLKRYGSVSKVQEGATPDELRELGLGDAKIA RILGLRSLVNKRLDVDTAYELKRRYGSVSAVRKAPVKELRELGLSDRKIARIKGIPET MLQVRGMSVEKAERLLERFDTWTKVKEAPVSELVRVPGVGLSLVKEIKAQVDPAWKAL LDVKGVSPELADRLVEELGSPYRVLTAKKSDLMRVERVGPKLAERIRAAGKRYVEERR SRRERIRRKLRG" CDS complement(5081..6298) /codon_start=1 /transl_table=11 /product="putative NifS protein" /protein_id="AAL61959.1" /translation="MHDQRSAGGKALGLDEIVNGFPLKEEWVYLDNAATSLKHERVIS AMERVLREFGVNVGRGAHPPGECATEEFERARDIVASFLGVEPECLAFTLNTTHSIHY VLASIRWKKGDAVVTTALEHHSNLAPWLRFSEVLGFEVEVVGFDRETGEVDMAELESV VDDNTRLIAITHESNALGSLQPVDEILELAEEVGAYVLLDAAQSLGHMDHDWSRYHFL AAPGHKGLLGPHGTGILYVREDVMEELELRLLGGGSTDYVTRDLEVVPREPPLSFESG TPNLPGVIGLAEGVKILEEVGLNRVERRIRKVTRRILNGLEELEGVEILAPEAERKTI VPFLVDGVDYAEVGKKLGERNICVRTGRHCASLVFERLGLDGCVRASVAFYNDIEEAE RFLEVVEEIARGS" BASE COUNT 1295 a 1924 c 2036 g 1139 t ORIGIN 1 tcaacggatc accatggtga taccttcttc cttcacaccc tcacgaaggg ccttgtgcac 61 gatgtccgct gtctccgggt cgagggtacc ggtgggttcg tccgccagga acacgatcgg 121 cttcttcgcc aactgtcgga tcaacaccac acgctgcttt tcgccaccgc tcaggtctcg 181 cgccaggtgc gtgatgcggt gctcgagctg caccatctcg atgaggtcca ccgcacgctg 241 gacggcttcc tctcccgagt agcccgcctc ttcaagcgcc tccatgacgt tctcgagaac 301 cgtctgctcc tcgtacaggg cgaaggttcg ctggaacatg atggcgatcc ttttacggaa 361 cctgcggcgc tccgtgtccg agagtcccca cagatcgacc acttcctctt ccagctttcc 421 cttctcacac ttcggacatt gctcaccgat gaactccgga cgctctatcc agccgcactc 481 ggggcacatt cccaccctgt agagaatgcg gccctcgtcg ggctcgtagt cgtccaatcc 541 cttcagcacg tggatgaaga cggacttgcc tgcgccgctt tctccgagga ctccgaggac 601 ctccccttcc ccgatctcga gctccggaat ctccaagcgg aagtcctcga actccttgac 661 taagtcctcc acgcggatta cccacgacac cgtcggtttc cccccacttc gtcgccaaga 721 gacacctcaa catcttatta ggttgtccga acgaggggga ggtccttgaa acctatccgg 781 gtatgcccgg agtgtggcaa gtacacggaa aaacatacct gcgagcggtg tggtcggcgc 841 accgaggagt ttttggacgg gcggcgaagg ctcgcgctta gcaagctcct ctcgggtatc 901 ctccggcact tccccgaaga ggtgaaggtg aaactcgacg acgagggttt cacggactgc 961 gacgtacacg agctggcgga gcgcatcaag aagtactgga agaaccgcga gtactatcgt 1021 tggctcactg gcgagcacat catcgcggtt gtagagacct gccccaaggg ccggttcgag 1081 atcgacgaac atggccgtat tcgggcgagg tacggtcatt cgaggcgtct cagtgtcagg 1141 ccgacgctcc cagaagccga gaacgtcaag gaactgtacc acggcacggc acgtgagaac 1201 ctggagtcta tactccagca cggaatcaag ccgatgggca gacgggcggt gcacctgacg 1261 gacgacgagc gtgaggccct gatcacggcg ctccgtcaca ctcggaatcc ggtgatactg 1321 gtcgtcgacg cggaacggct tcgacggcat gggttggtcc ccaggaaagc tggcaagaac 1381 gtctacgtgg tggaaggaac ggtgcctccg gactgcatca ctcgcgtgat ccggaaccca 1441 aggaggtccg tcgagagtga aaagcgctga atggttcgag gccagcaccg aggaggagcg 1501 cgtagaaatt cagcggaagg tagcccgtaa ggtccgactg gaaccgctcg acgacgtgga 1561 cgccgtcgct ggggtagacg tctcttaccg cggtgaagag taccgggccg ccgcggtggt 1621 tctggacccc gaaacctacg aagtgctcga ccgtcgagtg gtccacggga ctacggacgt 1681 cccctacgag cccgggttcc tggcgttccg tgagggtcca ccggccctgg aggctctcga 1741 gggactggac ttcgacctgc tgttcgtcca cggccacggc gtagcccacc ctaggcgggc 1801 cggtctcgct tcccacctcg gagtggccct agacgtcccg acgatagggg tggcgcggcg 1861 tccgctcgtg ggcaggtcga aggaggaacc gagtaggata ggcgatacca cacccctcgt 1921 acatagaggt gaggtagtcg gctacctcgt acgaaccgac gccgaagccc ggcccgtagt 1981 ggtgagcccg ggccatcggt gtaacctcga ggacgccgtg agatggacgc tgcgcctcgt 2041 ccgagtggga aagtggccag agccgctgcg tctggccgat ctgctctcac gtagaggagc 2101 atcacgggta gagggtgaaa gtcgtggcgc tggtgtacga cgctgagttc gtgggctcgg 2161 agcgagagtt cgaggaggaa cgcgagacgt tcctcaaggg tgtcaaggcc tacgacggcg 2221 ttctggccac ccgttacttg atggagagat cttccagcgc gaagaacgac gaggagctgc 2281 tcgagcttca ccagaatttc atcctcctca cgggatcgta cgcctgctcg atagacccga 2341 ccgaagatag gtatcagaac gtcatagtcc gtggcgttaa cttcgatgaa cgagttcaac 2401 gcctgtccac gggcggttca ccggcccgct acgcgatcgt gtacaggcgt ggctggaggg 2461 cgatcgccaa ggctctagat atcgacgagg aggacgtccc ggccatagag gtgcgtgccg 2521 tgaagcgtaa cccgctccaa ccggcgctgt accggatcct ggtgcgatac ggacgcgtcg 2581 acctcatgcc cgtaaccgtg gacgaggtac caccggagat ggccggtgag ttcgagcgac 2641 tgatcgaacg gtacgacgtc ccgatcgacg agaaggagga gcgcatactc gagatcctca 2701 gggagaaccc gtggactccc catgacgaga tcgcgagacg gctcgggctc tcggtctcgg 2761 aagtcgaggg tgagaaggac ccggagagca gcggtatcta cagcctgtgg tctcgggtcg 2821 tcgtgaacat cgagtacgac gagcgtacgg ccaagcggca cgtcaagcgc cgggatcgac 2881 tgctcgagga actgtacgag cacctggagg agctttcgga gcggtactta cgtcatccgt 2941 tgactagacg gtggatcgtc gagcataagc gcgacatcat gagaaggtat ctcgagcagc 3001 ggatcgtcga gtgtgcgctc aagctccagg accgttacgg gatccgcgag gacgtggcgc 3061 tgtgtctcgc cagggccttc gacgggtcca tctcgatgat cgctaccact ccgtaccgga 3121 cgctcaagga cgtgtgtccc gacctgacgc tcgaggaggc caagtccgtc aaccgcaccc 3181 tggcgacgct gatcgacgag cacggtctca gccccgacgc cgcggacgaa ctcatcgagc 3241 acttcgagtc gatcgccggt attctggcca ccgacctgga ggagatcgag cgaatgtacg 3301 aggagggcag gctctccgag gaggcttacc gggccgccgt cgagatacag ttggcggagc 3361 tcacgaagaa ggagggcgtg ggtaggaaga ccgcggagcg tctcttacgc gccttcggaa 3421 accccgagcg cgtcaagcag ctggcccgcg agttcgagat cgagaagctg gcctcggtgg 3481 aaggggtcgg cgagcgcgtc ctacgcagtc tcgtcccggg gtacgcttcg ttgatctcga 3541 tcaggggcat cgacagggag cgggcggagc gtctgctcaa gaagtacggt gggtactcca 3601 aggtccgtga ggctggtgtc gaagagctgc gcgaggacgg cctcaccgac gctcaaatcc 3661 gggagctcaa gggtctgaag accctggaga gcatagtagg ggatctggag aaggccgacg 3721 agctgaagcg gaagtacgga tccgcgtccg cggttcgacg tctgcccgta gaggagctac 3781 gcgaactcgg gttctccgac gatgagatcg ccgagatcaa ggggatacct aagaagctcc 3841 gggaggcctt cgaccttgag accgccgcgg aactctacga gcggtacggt tcgctgaaag 3901 agatcggtcg ccgactctct tacgacgatc tactcgagct cggtgcgact ccgaaggccg 3961 cggccgagat caaggggccg gagttcaagt tcctcctgaa catcgaaggg gtcggaccga 4021 aactcgctga gcggatactc gaggccgtgg attatgacct cgagcgactg gcttccctga 4081 atcccgagga acttgcggag aaggtggaag gactgggcga agagctcgcg gagcgcgtcg 4141 tgtacgctgc tagggagcgc gtagaaagtc gcaggaagtc cggccgccag gagcggtcgg 4201 aggaagaatg gaaggagtgg ctcgagcgta aggtcggcga ggggagggct cgccggttga 4261 ttgagtattt cggctccgcg ggtgaagtag gaaagctggt cgagaacgcc gaggtgtcga 4321 agctactgga ggtcccgggt ataggcgacg aggccgtcgc taggctcgta ccgggctaca 4381 agaccctacg agacgccggt ctcacgccgg ccgaagcgga gcgcgtgctg aaacggtacg 4441 gctcggtctc caaagtgcag gaaggagcca ctccggacga gttacgcgag ctcggcctcg 4501 gcgacgccaa gatcgcgagg atcctgggcc tgcgcagcct ggtgaacaag aggctggacg 4561 tggacaccgc gtacgagctc aagcgtagat acggttccgt ctccgccgtc cggaaggccc 4621 cggtgaaaga actgcgcgag ctcggcctct ccgatcggaa gatcgcacgt atcaagggca 4681 tcccggagac gatgcttcag gtccgaggga tgagcgtgga gaaagcggag cggctgctgg 4741 agcgtttcga tacctggacc aaggtgaagg aagctcccgt ctcggagctg gtgagagtcc 4801 cgggtgtcgg attgagtttg gtgaaggaga tcaaggctca ggtggatccg gcctggaagg 4861 cacttctgga tgtcaaaggg gtcagtccgg agctggccga ccggctcgtc gaggagctcg 4921 gcagcccgta tcgggtgctg acggccaaga aatccgacct gatgagagtc gagagagtcg 4981 gaccgaagct cgccgagcga atccgggccg cgggcaaacg gtacgtggag gagcgtaggt 5041 cgaggaggga gaggatcagg aggaagctcc gagggtaact tcacgacccg cgcgctatct 5101 cctctacaac ctccaggaac ctctccgctt cctcgatgtc gttgtagaac gccaccgagg 5161 cccgaacaca accgtcgagt cctagcctct cgaacaccag gctagcacag tgcctccccg 5221 ttcgcacgca gatgttccgc tcaccgagct ttttacccac ctccgcgtaa tccacgccgt 5281 cgaccaggaa cgggacgatg gtcttcctct ccgcctcggg tgctagaatc tcgactccct 5341 ccagctcctc taacccgttg aggatccgac gggtgacctt gcggatacgc cgctccacgc 5401 ggttcaaccc gacttcctcc aggatcttga caccttccgc cagccctatc acacccggaa 5461 ggttcggtgt tcctgattcg aaggagagcg ggggttctct ggggacgacc tcgagatctc 5521 gggttacgta gtccgtcgac cctccaccga ggagccgtag ctccagttcc tccatcacgt 5581 cctcgcggac gtaaaggatc ccggtaccgt gaggtcctaa gaggcccttg tgaccgggcg 5641 ccgctaggaa gtgatacctc gaccaatcgt gatccatgtg gcccaacgac tgggccgcgt 5701 cgagcagcac gtacgcaccg acctcctcgg cgagctctaa gatctcgtcc acgggctgca 5761 atgaacccag ggcgttgctc tcgtgagtta tggcgatcag acgtgtgttg tcgtcgacca 5821 cggactccaa ctcagccatg tcaacctcgc cggtctcccg gtcgaaccct accacctcga 5881 cttcgaaccc caacacctcg gagaacctca accacggtgc caggttcgag tggtgctcga 5941 gggccgtggt gacgacggca tcgcctttct tccagcggat cgaagccagc acgtagtgga 6001 tcgaatgggt cgtgttcagc gtgaaggcga ggcactccgg ctcgactccg agaaacgagg 6061 cgacgatatc cctagcacgc tcgaactcct ctgtggcaca ctcgcccgga gggtgcgccc 6121 cgcgacccac gttcacgccg aactcccgca agaccctctc catagcgctt atgacgcgtt 6181 cgtgcttcaa cgacgtagcg gcgttgtcga ggtacaccca ctcctccttg agtggaaacc 6241 cgttcacgat ctcatccaaa cccaacgcct tccctccggc cgatctttga tcatggattc 6301 aaagtcgttg ctccgccggg aacgttaacg ctatcggacg tctttgacgc ctaagcgggc 6361 gtgcagttca tcacccgcct ttgagaaaac ccct //