LOCUS AF307518 2428 bp mRNA linear VRL 05-AUG-2001 DEFINITION Human herpesvirus 8 clone T1 ORF K3 mRNA, complete cds. ACCESSION AF307518 VERSION AF307518.1 KEYWORDS . SOURCE Human gammaherpesvirus 8 (HHV8/KSHV) ORGANISM Human gammaherpesvirus 8 Viruses; Duplodnaviria; Heunggongvirae; Peploviricota; Herviviricetes; Herpesvirales; Orthoherpesviridae; Gammaherpesvirinae; Rhadinovirus; Rhadinovirus humangamma8. REFERENCE 1 (bases 1 to 2428) AUTHORS Rimessi,P., Bonaccorsi,A., Stuerzl,M., Fabris,M., Brocca-Cofano,E., Caputo,A., Melucci-Vigo,G., Falchi,M., Cafaro,A., Cassai,E., Ensoli,B. and Monini,P. TITLE Transcription pattern of human herpesvirus 8 open reading frame K3 in primary effusion lymphoma and Kaposi's sarcoma JOURNAL J. Virol. 75 (15), 7161-7174 (2001) PUBMED 11435597 REFERENCE 2 (bases 1 to 2428) AUTHORS Monini,P., Rimessi,P., Bonaccorsi,A. and Ensoli,B. TITLE Direct Submission JOURNAL Submitted (25-SEP-2000) Laboratory of Virology, Istituto Superiore di Sanita', viale Regina Elena, 299, Rome 00161, Italy FEATURES Location/Qualifiers source 1..2428 /organism="Human gammaherpesvirus 8" /mol_type="mRNA" /db_xref="taxon:37296" /map="between ORF 2 and ORF K4" /clone="T1" /note="isolated from BCBL-1 cells; possible bicistronic transcript; acronym: HHV8/KSHV" misc_feature 4 /note="alternative transcription start site" misc_feature 9 /note="alternative transcription start site" misc_feature 17 /note="alternative transcription start site" misc_feature 153..914 /note="amino-terminal truncated ORF 70 may be translated; similar to thymidilate synthase" CDS 1396..2397 /note="MCH-I-downregulating viral factor; delayed-early" /codon_start=1 /product="ORF K3" /protein_id="AAK83790.1" /translation="MEDEDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTI SRNTACQICGVVYNTRVVWRPLREMTLLPRLTYQEGLELIVFIFIMTLGAAGLAAATW VWLYIVGGHDPEIDHVAAAAYYVFFVFYQLFVVFGLGAFFHMMRHVGRAYAAVNTRVE VFPYRPRPTSPECAVEEIELQEILPRGDNQDEEGPAGAAPGDQNGPAGAAPGDQDGPA DGAPVHRDSEESVDEAAGYKEAGEPTHNDGRDDNVEPTAVGCDCNNLGAERYRATYCG GYVGAQSGDGAYSVSCHNKAGPSSLVDILPQGLPGGGYGSMGVIRKRSAVSSALMFH" polyA_site 2410 /note="alternative" polyA_site 2428 BASE COUNT 522 a 554 c 729 g 623 t ORIGIN 1 ccgaggttga cccttgttcg attcagcatg aggtaactgg ggctgagacg ccccacgagg 61 aacttcagta tctcaggcag ttgagggaaa ttttgtgccg tggcagcgat cgactcgacc 121 gcaccggcat aggcaccctc tctctatttg gcatgcaggc caggtatagt ctgcgggacc 181 actttccctt actaaccaca aagcgggtgt tttggcgagg cgtagtgcaa gagctgcttt 241 ggtttctgaa ggggagtact gactccaggg agctttcaag aacaggagtc aagatatggg 301 acaaaaatgg ctccagggag ttcctggccg ggcgcggcct ggcgcacaga agggaggggg 361 atttgggacc tgtttacggt ttccagtgga ggcactttgg ggcggcgtac gtggacgcgg 421 atgctgacta tacaggccag gggtttgacc aattgtcgta cattgtggat ttaataaaaa 481 ataatccgca cgatagaaga atcattatgt gtgcgtggaa cccggcggac ttgtcgttga 541 tggcgcttcc gccctgtcac ttgttatgtc aattttatgt agctgacggt gagctttcct 601 gtcagctgta tcagaggtcg ggagacatgg gtttgggagt tccttttaac attgccagct 661 attccctctt aacttatatg cttgctcatg ttactggtct tagacccggg gagtttattc 721 acacgttggg agatgcccac atctacaaaa cgcatataga gccactacgg ctgcagctga 781 cgcgcactcc acgtcccttt ccgcgcctgg agatactccg gtctgtttct tccatggaag 841 agtttacacc tgatgatttt agactggtgg actactgccc gcatcctacc attcgtatgg 901 aaatggcagt atagcaggta gggcgatgtt tagcgtgcgg tcagagtggt gggcgtcaag 961 gcggaaacag gatgcccgct catgtgcgta tttagtggcc cgtctgtata cgtgagggct 1021 ttttaaaaac cgaattcgtg ggagcgggtt gtctacatga atcggtgact ttttgtgaga 1081 tagccacata cgtccctctt ggctgttaca ataaagctga gccacaaacg cccctcttgg 1141 ctgttacaat aaagccgagc cacaaagtac ataagtgttt ggagtggagt ggtgtgtttc 1201 agttggccga taccacgcca gcgtcgcctc ccagttaacc ggcttgtaca gtgagtggct 1261 gtagcattac cagtaggtag tcatggaatt gtatagacca acgaggggga ccccggttgc 1321 ctggacgcgt gccctggtac ggtcacttgt tgcaggggtt aatgccatgt tttattgtgg 1381 gttctctctc aggatatgga agatgaggat gttcctgtct gctggatttg caacgaggag 1441 ctcggaaatg agagatttag agcctgtgga tgcacaggag agctcgagaa cgtccataga 1501 agttgtttaa gcacctggct cactatctct agaaacacgg cctgtcagat atgtggcgtc 1561 gtatacaaca cgcgcgtggt ctggcgaccc ttgcgcgaaa tgacgctatt gcctcggctg 1621 acttaccagg agggtctgga actgattgtt tttattttca tcatgacatt gggggccgct 1681 ggccttgccg ctgcgacgtg ggtttggcta tatatagtgg gcggtcatga cccagagata 1741 gatcacgtcg ctgcagccgc gtactacgtt tttttcgtgt tttaccaatt gtttgtcgtt 1801 tttgggttgg gtgcgttttt ccacatgatg cgccacgtgg ggcgggcata cgctgctgta 1861 aacacgcggg ttgaagtgtt tccatataga cctcggccga catcaccaga gtgtgcagta 1921 gaggagatcg agcttcagga aattcttccc cgtggggata accaggacga ggaggggccc 1981 gcgggggcag ctccaggcga ccaaaatggc cccgcggggg cagctccagg cgaccaagat 2041 ggccccgcgg atggcgctcc tgtgcatcgc gactcagaag aatccgtgga tgaagctgca 2101 gggtacaagg aagcgggaga accaacacat aatgatggac gtgatgacaa tgtagagcca 2161 accgcggttg ggtgtgactg taacaacttg ggcgctgagc ggtatagggc cacttactgt 2221 ggcggttatg ttggtgccca gtcgggcgat ggggcttata gtgtctcctg ccataataag 2281 gctggaccct cctctctagt tgatatcctt ccacagggtt tgcctggggg tggctatggt 2341 tccatgggcg tgattaggaa acgttcggct gtttcgtctg cccttatgtt tcattaaaag 2401 tatataagag cacactgtgt ggttggtg //