LOCUS AF263519 5061 bp DNA linear BCT 15-JUL-2016 DEFINITION Pseudomonas aeruginosa integron In59, partial sequence. ACCESSION AF263519 VERSION AF263519.1 KEYWORDS . SOURCE Pseudomonas aeruginosa ORGANISM Pseudomonas aeruginosa Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas. REFERENCE 1 (bases 1 to 5061) AUTHORS Poirel,L., Lambert,T., Turkoglu,S., Ronco,E., Gaillard,J. and Nordmann,P. TITLE Characterization of Class 1 integrons from Pseudomonas aeruginosa that contain the bla(VIM-2) carbapenem-hydrolyzing beta-lactamase gene and of two novel aminoglycoside resistance gene cassettes JOURNAL Antimicrob. Agents Chemother. 45 (2), 546-552 (2001) PUBMED 11158753 REFERENCE 2 (bases 1 to 5061) AUTHORS Poirel,L., Lambert,T., Turkoglu,S., Ronco,E., Gaillard,J.-L. and Nordmann,P. TITLE Direct Submission JOURNAL Submitted (03-MAY-2000) Service de Bacteriologie-Virologie, Hopital de Bicetre, 78, rue du General Leclerc, Le Kremlin Bicetre 94275, France FEATURES Location/Qualifiers source 1..5061 /organism="Pseudomonas aeruginosa" /mol_type="genomic DNA" /db_xref="taxon:287" mobile_element <1..>5061 /mobile_element_type="transposon:integron In59" gene complement(136..1149) /gene="intI1" CDS complement(136..1149) /gene="intI1" /codon_start=1 /transl_table=11 /product="integrase INTI1" /protein_id="AAK26251.1" /translation="MKTATAPLPPLRSVKVLDQLRERIRYLHYSLRTGQGYVNWVCAF IRFHGVGHPATLGSSEVEAFLFWLAHERKVSVSTHCQALAALLFFYGKVLCTDLPWLQ EIGRPRPLRRLPVVLTPDEVVCILGFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDF DHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALER KYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATP HTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHVLKVGGAGVRSPLDALPPLT SER" misc_feature 1386..1392 /note="core site" gene 1403..1798 /gene="aacA29a" CDS 1403..1798 /gene="aacA29a" /note="AAC(6')-29a" /codon_start=1 /transl_except=(pos:1403..1405,aa:Met) /transl_table=11 /product="6'-N-aminoglycoside acetyltransferase type I" /protein_id="AAK26252.2" /translation="MSILPVKEQDAADWLALRNLLWLADDHASEIEQYFSGGLEGLVE VLIARDATGAAVGHVELSIRHDLEELQGIKTGYIEGLYVAPSHRSTDLVRRFLRESEK WALEQGCSAFASDRSDRVITHRKFAGSAV" misc_feature complement(1793..1799) /note="core site" misc_feature 1898..1904 /note="core site" gene 1929..2729 /gene="bla vim-2" CDS 1929..2729 /gene="bla vim-2" /note="carbapenem-hydrolyzing metalloenzyme" /codon_start=1 /transl_table=11 /product="beta-lactamase VIM-2" /protein_id="AAK26253.1" /translation="MFKLLSKLLVYLTASIMAIASPLAFSVDSSGEYPTVSEIPVGEV RLYQIADGVWSHIATQSFDGAVYPSNGLIVRDGDELLLIDTAWGAKNTAALLAEIEKQ IGLPVTRAVSTHFHDDRVGGVDVLRAAGVATYASPSTRRLAEVEGNEIPTHSLEGLSS SGDAVRFGPVELFYPGAAHSTDNLVVYVPSASVLYGGCAIYELSRTSAGNVADADLAE WPTSIERIQQHYPEAQFVIPGHGLPGGLDLLKHTTNVVKAHTNRSVVE" misc_feature complement(2742..2748) /note="core site" misc_feature 2908..2914 /note="core site" gene 2925..3320 /gene="aacA29b" CDS 2925..3320 /gene="aacA29b" /note="AAC(6')-29b" /codon_start=1 /transl_except=(pos:2925..2927,aa:Met) /transl_table=11 /product="aminoglycoside acetyltransferase type I" /protein_id="AAK26254.2" /translation="MSILPVKEQDAADWLALRNLLWLADDHASEIEQYFSGGFEEPAE VLIARDATGAAVGHVELSIRHDLEELQGIKTGYIEGLYVAPSHRSTDLVRRFLRESEK WALEQGCSAFASDRSDRVITHRKFAGSAV" misc_feature complement(3315..3321) /note="core site" misc_feature 3413..3419 /note="core site" gene 3522..3869 /gene="qacEdelta1" CDS 3522..3869 /gene="qacEdelta1" /codon_start=1 /transl_table=11 /product="disinfectant resistance protein QACE delta 1" /protein_id="AAK26255.1" /translation="MKGWLFLVIAIVGEVIATSALKSSEGFTKLAPSAVVIIGYGIAF YFLSLVLKSIPVGVAYAVWSGLGVVIITAIAWLLHGQKLDAWGFVGMGLIIAAFLLAR SPSWKSLRRPTPW" gene 3863..4702 /gene="sul1" CDS 3863..4702 /gene="sul1" /codon_start=1 /transl_table=11 /product="sulfonamide resistance protein SUL-1" /protein_id="AAK26256.1" /translation="MVTVFGILNLTEDSFFDESRRLDPAGAVTAAIEMLRVGSDVVDV GPAASHPDARPVSPADEIRRIAPLLDALSDQMHRVSIDSFQPETQRYALKRGVGYLND IQGFPDPALYPDIAEADCRLVVMHSAQRDGIATRTGHLRPEDALDEIVRFFEARVSAL RRSGVAADRLILDPGMGFFLSPAPETSLHVLSNLQKLKSALGLPLLVSVSRKSFLGAT VGLPVKDLGPASLAAELHAIGNGADYVRTHAPGDLRSAITFSETLAKFRSRDARDRGL DHA" CDS 4830..>5061 /note="orf5" /codon_start=1 /transl_table=11 /product="unknown" /protein_id="AAK26257.1" /translation="MDSEEPPNVRVACSGDIDEVVRLMHDAAAWMSAKGTPAWDVARI DRTFAETFVLRSELLVASCSDGIVGCCTLSAED" BASE COUNT 1060 a 1431 c 1456 g 1114 t ORIGIN 1 gatccatcag gcaacgacgg gctgctgcgg gccatcagcg gacgcaggga ggacttgccg 61 caaccggccg ttcgatgcgg caccgatggc cttcgcgcag gggtagtgaa tccgccagga 121 ttgacttgcg ctgccctacc tctcactagt gaggggcggc agcgcatcaa gcggtgagcg 181 cactccggca ccgccaactt tcagcacatg cgtgtaaatc atcgtcgtag agacgtcgga 241 atggccgagc agatcctgca cggttcgaat gtcgtaaccg ctgcggagca aggccgtcgc 301 gaacgagtgg cggagggtgt gcggtgtggc gggcttcgtg atgcctgctt gttctacggc 361 acgtttgaag gcgcgctgaa aggtctggtc atacatgtga tggcgacgca cgacaccgct 421 ccgtggatcg gtcgaatgcg tgtgctgcgc aaaaacccag aaccacggcc aggaatgccc 481 ggcgcgcgga tacttccgct caagggcgtc gggaagcgca acgccgctgc ggccctcggc 541 ctggtccttc agccaccatg cccgtgcacg cgacagctgc tcgcgcaggc tgggtgccaa 601 gctctcgggt aacatcaagg cccgatcctt ggagcccttg ccctcccgca cgatgatcgt 661 gccgtgatcg aaatccagat ccttgacccg cagttgcaaa ccctcactga tccgcatgcc 721 cgttccatac agaagctggg cgaacaaacg atgctcgcct tccaaaaaac cgaggatgca 781 aaccacttca tccggggtca gcaccaccgg caagcgccgc aacggccgag gtcttccgat 841 ctcctgaagc cagggcaaat ccgtgcacag caccttgccg taaaaaaaca gcaaggccgc 901 caatgcctga caatgcgtgg agaccgaaac cttgcgctcg tgcgccagcc agaacaaaaa 961 tgcctcaact tcgctgctgc ccaaggttgc cgggtgaccc acaccgtgga aacggatgaa 1021 ggcacaaacc cagttgacat aaccctgtcc ggttcgtaaa ctgtaatgca agtagcgtat 1081 gcgctcacgc aactggtcca aaaccttgac cgaacgcagc ggtggtaacg gcgcagtggc 1141 ggttttcatg gcttgttatg actgtttttt tgtacagtct atgcctcggg catccaagca 1201 gcaagcgcgt tacgccgtgg gtcgatgttt gatgttatgg agcagcaacg atgttacgca 1261 gcagggcagt cgccctaaaa caaagttaga tgcactaagc acataattgc tcacagccaa 1321 actatcaggt caagtctgct tttattattt ttaagcgtgc ataataagcc ctacacaaat 1381 tgggagttag acggctttga gcgtttcgat cttacctgtg aaagaacaag acgctgccga 1441 ctggctagcg ctgcggaatc ttctttggct cgcggatgat cacgcctcgg agattgagca 1501 gtacttctct ggtggacttg aggggcttgt agaagtgctc atcgcccgtg atgctaccgg 1561 cgcggctgtt gggcatgtcg aactctcgat aagacatgac ttggaagaac tccaaggaat 1621 caagaccggc tacatcgaag gcctttatgt ggccccaagc catcgatcaa cagaccttgt 1681 gaggcgtttc ttgcgtgagt ccgagaagtg ggccctagaa caagggtgca gcgcatttgc 1741 ctcagacaga agtgatcggg tcatcacgca ccgcaagttc gcaggcagcg ccgtctaaca 1801 actcgttcaa gccgaacccg cttcgctccg gcaacggcgt ggcaggttaa gcttggcacg 1861 cccgccgctt cactatgcgg gtcggcttaa ctcaggcgtt atgccgcact cacccccatg 1921 gagttttgat gttcaaactt ttgagtaagt tattggtcta tttgaccgcg tctatcatgg 1981 ctattgcgag tccgctcgct ttttccgtag attctagcgg tgagtatccg acagtcagcg 2041 aaattccggt cggggaggtc cggctttacc agattgccga tggtgtttgg tcgcatatcg 2101 caacgcagtc gtttgatggc gcagtctacc cgtccaatgg tctcattgtc cgtgatggtg 2161 atgagttgct tttgattgat acagcgtggg gtgcgaaaaa cacagcggca cttctcgcgg 2221 agattgagaa gcaaattgga cttcctgtaa cgcgtgcagt ctccacgcac tttcatgacg 2281 accgcgtcgg cggcgttgat gtccttcggg cggctggggt ggcaacgtac gcatcaccgt 2341 cgacacgccg gctagccgag gtagagggga acgagattcc cacgcactct ctagaaggac 2401 tctcatcgag cggggacgca gtgcgcttcg gtccagtaga actcttctat cctggtgctg 2461 cgcattcgac cgacaactta gttgtgtacg tcccgtctgc gagtgtgctc tatggtggtt 2521 gtgcgattta tgagttgtca cgcacgtctg cggggaacgt ggccgatgcc gatctggctg 2581 aatggcccac ctccattgag cggattcaac aacactaccc ggaagcacag ttcgtcattc 2641 cggggcacgg cctgccgggc ggtctagact tgctcaagca cacaacgaat gttgtaaaag 2701 cgcacacaaa tcgctcagtc gttgagtagc aggcagatgc ggcataacat gaagttgcag 2761 ccgaccatca ctccgctgcg ctccgttctg gcggctgaac ttcggcgtta gatgcactaa 2821 gcacataatt gctcacagcc aaactatcag gtcaagtctg cttttattat ttttaagcgt 2881 gcataataag ccctacacaa attgggagtt agacggcttt gagcgtttcg atcttacctg 2941 tgaaagaaca agacgctgcc gactggctag cgctgcggaa tcttctttgg ctcgcggatg 3001 atcacgcctc ggagattgag cagtacttct ctggtggatt tgaggagcct gcagaagtgc 3061 tcatcgcccg tgatgctacc ggcgcggctg ttgggcatgt cgaactctcg ataagacatg 3121 acttggaaga actccaagga atcaagaccg gctacatcga aggcctttat gtggccccaa 3181 gccatcgatc aacagacctt gtgaggcgtt tcttgcgtga gtccgagaag tgggccctag 3241 aacaagggtg cagcgcattt gcctcagaca gaagtgatcg ggtcatcacg caccgcaagt 3301 tcgcaggcag cgccgtctaa caactcgttc aagccgaacc cgttcgctcc ggcaacggcg 3361 tggcaggtta agcttgccac gccgccgcct ccactctgcc gcttagcttg gcgttagatg 3421 cactaagcac ataattgctc acagccaaac tatcaggtca agtctgcttt tattattttt 3481 aagcgtgcat aataagccct acacaaattg ggagatatat catgaaaggc tggctttttc 3541 ttgttatcgc aatagttggc gaagtaatcg caacatccgc attaaaatct agcgagggct 3601 ttactaagct tgccccttcc gccgttgtca taatcggtta tggcatcgca ttttattttc 3661 tttctctggt tctgaaatcc atccctgtcg gtgttgctta tgcagtctgg tcgggactcg 3721 gcgtcgtcat aattacagcc attgcctggt tgcttcatgg gcaaaagctt gatgcgtggg 3781 gctttgtagg tatggggctc ataattgctg cctttttgct cgcccgatcc ccatcgtgga 3841 agtcgctgcg gaggccgacg ccatggtgac ggtgttcggc attctgaatc tcaccgagga 3901 ctccttcttc gatgagagcc ggcggctaga ccccgccggc gctgtcaccg cggcgatcga 3961 aatgctgcga gtcggatcag acgtcgtgga tgtcggaccg gccgccagcc atccggacgc 4021 gaggcctgta tcgccggccg atgagatcag acgtattgcg ccgctcttag acgccctgtc 4081 cgatcagatg caccgtgttt caatcgacag cttccaaccg gaaacccagc gctatgcgct 4141 caagcgcggc gtgggctacc tgaacgatat ccaaggattt cctgaccctg cgctctatcc 4201 cgatattgct gaggcggact gcaggctggt ggttatgcac tcagcgcagc gggatggcat 4261 cgccacccgc accggtcacc ttcgacccga agacgcgctc gacgagattg tgcggttctt 4321 cgaggcgcgg gtttccgcct tgcgacggag cggggtcgct gccgaccggc tcatcctcga 4381 tccggggatg ggatttttct tgagccccgc accggaaaca tcgctgcacg tgctgtcgaa 4441 ccttcaaaag ctgaagtcgg cgttggggct tccgctattg gtctcggtgt cgcggaaatc 4501 cttcttgggc gccaccgttg gccttcctgt aaaggatctg ggtccagcga gccttgcggc 4561 ggaacttcac gcgatcggca atggcgctga ctacgtccgc acccacgcgc ctggagatct 4621 gcgaagcgca atcaccttct cggaaaccct cgcgaaattt cgcagtcgcg acgccagaga 4681 ccgagggtta gatcatgcct agcattcacc ttccggccgc ccgctagcgg accctggtca 4741 ggttccgcga aggtgggcgc agacatgctg ggctcgtcag gatcaaactg cactatgagg 4801 cggcggttca taccgcgcca ggggagcgaa tggacagcga ggagcctccg aacgttcggg 4861 tcgcctgctc gggtgatatc gacgaggttg tgcggctgat gcacgacgct gcggcgtgga 4921 tgtccgccaa gggaacgccc gcctgggacg tcgcgcggat cgaccggaca ttcgcggaga 4981 ccttcgtcct gagatccgag ctcctagtcg cgagttgcag cgacggcatc gtcggctgtt 5041 gcaccttgtc ggccgaggat c //