LOCUS AF210055 1891 bp DNA linear BCT 26-JUL-2016 DEFINITION Staphylococcus aureus strain CMRSA-1 accessory gene regulator locus, partial sequence. ACCESSION AF210055 VERSION AF210055.1 KEYWORDS . SOURCE Staphylococcus aureus ORGANISM Staphylococcus aureus Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae; Staphylococcus. REFERENCE 1 (bases 1 to 1891) AUTHORS Papakyriacou,H., Vaz,D., Simor,A., Louie,M. and McGavin,M.J. TITLE Molecular analysis of the accessory gene regulator (agr) locus and balance of virulence factor expression in epidemic methicillin-resistant Staphylococcus aureus JOURNAL J. Infect. Dis. 181 (3), 990-1000 (2000) PUBMED 10720522 REFERENCE 2 (bases 1 to 1891) AUTHORS Papakyriacou,H. and McGavin M.J. TITLE Direct Submission JOURNAL Submitted (01-DEC-1999) Laboratory Medicine and Pathobiology, University of Toronto, Sunnybrook and Womens College Health Science Centre, 2075 Bayview Avenue, Toronto, ON M4N 3M5, Canada FEATURES Location/Qualifiers source 1..1891 /organism="Staphylococcus aureus" /mol_type="genomic DNA" /strain="CMRSA-1" /db_xref="taxon:1280" /note="epidemic methicillin resistant strain" gene <1..545 /gene="agrB" /note="variant type I interference group polymorphism" CDS <1..545 /gene="agrB" /note="processing protein for AgrD" /codon_start=3 /transl_table=11 /product="AgrB" /protein_id="AAF23168.1" /translation="QFATYLQKRNNLDHIQFLQVRLGMQVLAKNIGKLIVMYTIAYIL NIFLFTLITNLTFYLIRRHAHGAHAPSSFWCYVESIILFILLPLVIVNFHINFLIMTI LTFIAIGLIIKYAPAATKKKPIPVRLIKRKKYYAIIVSLIFFIITLIIKEPFAQFIQL GIIIEAITLLPIFFIKEDLK" variation 303..341 /gene="agrB" /note="compared to Staphylococcus aureus RN6390 agrB sequence in GenBank Accession Number X52543" variation 427 /gene="agrB" /note="compared to Staphylococcus aureus RN6390 agrB sequence in GenBank Accession Number X52543; results in tyrosine to isoleucine substitution" /replace="c" variation 429 /gene="agrB" /note="compared to Staphylococcus aureus RN6390 agrB sequence in GenBank Accession Number X52543; results in leucine to phenylalanine substitution" /replace="c" gene 542..682 /gene="agrD" CDS 542..682 /gene="agrD" /note="autoinducer peptide" /codon_start=1 /transl_table=11 /product="AgrD" /protein_id="AAF23169.1" /translation="MNTLFNLFFDFITGILKNIGNIAAYSTCDFIMDEVEVPKELTQL HE" variation 684..685 /note="compared to Staphylococcus aureus RN6390 agrD sequence in GenBank Accession Number X52543; results in loss of DraI recognition sequence" /replace="tt" gene 707..>1891 /gene="agrC" CDS 707..>1891 /gene="agrC" /note="membrane sensor" /codon_start=1 /transl_table=11 /product="AgrC" /protein_id="AAF23170.1" /translation="MELLNSYNFVLFVLTQMILMFTIPAIISGIKYSKLDYFFIIGIS TLSLFLFKMFDSASLIILTSFIIIMYFVKIKWYSILLIMTSQIILYCANYMYIVIYAY ITKISDSIFVIFPSFFVVYVTISILFSYIINRVLKKISTPYLILNKGFLIVISTILLL TFSLFFFYSQINSDEAKVIRQYSFIFIGITIFLSILTFVISQFLLKEMKYKRNQEEIE TYYEYTLKIEAINNEMRKFRHDYVNILTTLSEFIREDDMPGLRDYFNKNIVPMKDNLQ MNAIKLNGIENLKVREIKGLITAKILRAQEMNIPISIEIPDEVSSINLNMIDLSHSIG IILDNAIEASTEIDDPIIRVAFIESENSVTFIVMNKCADDIPRIHELFQESFSTKGEG RGL" variation 831 /gene="agrC" /note="compared to Staphylococcus aureus RNR282 agrC sequence in GenBank Accession Number U85096; results in valine to glycine substitution" /replace="t" variation 1458 /gene="agrC" /note="compared to Staphylococcus aureus RNR282 agrC sequence in GenBank Accession Number U85096; results in tyrosine to phenylalanine substitution" /replace="a" BASE COUNT 655 a 262 c 261 g 713 t ORIGIN 1 accagtttgc cacgtatctt caaaagagaa ataacttaga tcatattcaa tttttgcaag 61 tacgattagg gatgcaggtc ttagctaaaa atataggaaa actgattgtt atgtatacga 121 ttgcctatat tttaaacatt tttctcttta cgttaattac gaatttaaca ttttatttaa 181 taagaagaca tgctcatggt gcccatgcac cttcttcctt ttggtgttat gtagaaagta 241 ttatattatt tatactttta cctttagtaa tagtaaattt tcatattaac tttttaatta 301 tgactatttt gacgtttatt gctattggtt tgataattaa atatgctcct gcagcaacta 361 aaaagaaacc tattcccgtt cgacttatta agcgaaaaaa atattacgca attattgtta 421 gtttaatctt tttcattatc acacttatca tcaaagaacc atttgcccaa tttattcaat 481 taggcatcat aatagaagcc attactttac tacctatttt ctttattaag gaggacttaa 541 aatgaataca ttatttaatt tattttttga ttttattact gggattttaa aaaacattgg 601 taacatcgca gcttatagta catgcgactt cataatggat gaagttgaag tacctaaaga 661 attaactcaa ttacacgaat aataaaaata gaaagtgtga tagtaggtgg aattattaaa 721 tagttataat tttgttttat tcgtattaac tcaaatgata ttaatgttta caataccagc 781 tataattagt ggtattaagt acagtaaact tgattatttt ttcattatag gaatttcgac 841 attatcgtta tttctattta aaatgtttga tagcgcgtcc ttaatcattt taacttcatt 901 cattattata atgtattttg tcaaaatcaa atggtattct attttgttga ttatgacttc 961 acagattatt ctgtactgtg ctaactacat gtatatagtt atatatgcat atatcaccaa 1021 aatttctgat agtatatttg taatattccc tagctttttt gtagtttatg tgactattag 1081 tatactattc tcatatataa taaatagagt tctcaaaaaa atcagcacac catatctaat 1141 actaaacaaa ggatttttaa tagttatttc gactatctta ctgcttactt tttcattatt 1201 tttcttttat tcacaaataa actcggatga agctaaagta ataaggcagt attcttttat 1261 ttttattggt atcactatat ttttaagtat attaacattt gttatttctc aatttctact 1321 taaagagatg aaatataaac gtaatcaaga agaaattgaa acctattatg aatatacatt 1381 gaagattgaa gctatcaaca acgaaatgcg caagttccgt cacgattatg tcaatatctt 1441 aacaacgctt tcagaattca ttcgagaaga tgacatgcct ggcctacgtg attatttcaa 1501 taaaaatatt gtacctatga aagacaattt acaaatgaat gctataaaat taaatggtat 1561 tgagaatctt aaagtacgtg agattaaagg cttaatcaca gctaaaattt tacgcgccca 1621 agaaatgaat ataccgatta gtatcgaaat acccgatgaa gtaagtagca ttaatttgaa 1681 tatgatcgat ttaagtcaca gtattggtat tattcttgat aatgcaattg aggcatcaac 1741 tgaaattgat gaccctatca ttcgcgttgc atttattgaa agtgaaaact cagtaacgtt 1801 tattgttatg aataaatgcg ctgatgatat accacgcatt catgagttat tccaagaaag 1861 tttttctact aaaggtgaag gtcgtggttt a //