LOCUS AF163573 3838 bp mRNA linear HUM 07-MAR-2000 DEFINITION Homo sapiens CARKL (CARKL) mRNA, complete cds. ACCESSION AF163573 VERSION AF163573.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3838) AUTHORS Touchman,J.W., Anikster,Y., Dietrich,N.L., Maduro,V.V., McDowell,G., Shotelersuk,V., Bouffard,G.G., Beckstrom-Sternberg,S.M., Gahl,W.A. and Green,E.D. TITLE The genomic region encompassing the nephropathic cystinosis gene (CTNS): complete sequencing of a 200-kb segment and discovery of a novel gene within the common cystinosis-causing deletion JOURNAL Genome Res. 10 (2), 165-173 (2000) PUBMED 10673275 REFERENCE 2 (bases 1 to 3838) AUTHORS Touchman,J.W. TITLE Direct Submission JOURNAL Submitted (29-JUN-1999) NIH Intramural Sequencing Center, National Institutes of Health, 8717 Grovemont Circle, Gaithersburg, MD 20877, USA FEATURES Location/Qualifiers source 1..3838 /db_xref="H-InvDB:HIT000072225" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" gene 1..3838 /gene="CARKL" CDS 104..1540 /gene="CARKL" /codon_start=1 /product="CARKL" /protein_id="AAF24936.1" /translation="MAARPITLGIDLGTTSVKAALLRAAPDDPSGFAVLASCARAARA EAAVESAVAGPQGREQDVSRILQALHECLAALPRPQLRSVVGIGVSGQMHGVVFWKTG QGCEWTEGGITPVFEPRAVSHLVTWQDGRCSSEFLASLPQPKSHLSVATGFGCATIFW LLKYRPEFLKSYDAAGTIHDYVVAMLCGLPRPLMSDQNAASWGYFNTQSQSWNVKTLR SSGFPVHLLPDIAEPGSVAGRTSHMWFEIPKGTQVGVALGDLQASVYSCMAQRTDAVL NISTSVQLAASMPSGFQPAQTPDPTAPVAYFPYFNRTYLGVAASLNGGNVLATFVHML VQWMADLGLEVEESTVYSRMIQAAVQQRDTHLTITPTVLGERHLPDQLASVTRISSSD LSLGHVTRALCRGIVQNLHSMLPIQQLQEWGVERVMGSGSALSRNDVLKQEVQRAFPL PMSFGQDVDAAVGAALVMLRRHLNQKES" repeat_region 2915..3205 /gene="CARKL" /rpt_family="Alu" /rpt_type=dispersed repeat_region complement(3406..3817) /rpt_family="MER44C" /rpt_type=dispersed BASE COUNT 829 a 1065 c 1084 g 860 t ORIGIN 1 gattggcagg cgactccccg cccctgcccc gcccccctgg gcgaagagcg cggacttgtg 61 gggccgctgg ctgcagactg gagctgcgcg ggtcagggag ataatggctg cgcggccgat 121 caccctcggc attgacctgg gcaccacatc tgtgaaggca gctctgctga gggccgcgcc 181 cgacgaccca tccgggttcg cagtgctggc gagctgtgcc cgtgctgcgc gggcagaggc 241 ggcggtcgag agcgcggtgg ccgggcccca ggggcgggag caggatgtga gtagaatcct 301 ccaagcccta cacgagtgcc ttgctgccct tccccgaccc cagctccgga gcgtcgtggg 361 catcggggtg tcgggccaga tgcatggagt cgtgttttgg aaaacaggcc aaggctgtga 421 atggacagag ggagggatta ccccggtgtt cgagccccga gctgttagcc acctggtcac 481 gtggcaggat ggccgatgta gcagcgaatt cctggcctct ctgccccagc cgaagtctca 541 tctcagtgtg gccacgggct tcggctgtgc aaccatcttc tggcttttga aatatcgccc 601 agagttcctg aagtcctacg acgcagccgg taccatccac gactatgtgg ttgccatgct 661 gtgtggcttg ccaagacctc tgatgtccga ccagaatgct gccagctggg gctatttcaa 721 cacgcagagc caaagctgga acgtaaagac actgaggagc tcgggttttc ctgtccacct 781 gctcccagac atcgccgagc ctggcagtgt ggcgggcaga acttcccaca tgtggtttga 841 aatcccaaag gggacgcagg tgggagtggc cttgggtgat ttacaggcct ctgtctattc 901 ctgcatggcc cagaggacag atgcagttct caacatcagc acctcggttc agctggcagc 961 ctccatgcct tcaggattcc agcctgcaca gactccagac cctacggccc cagtcgccta 1021 cttcccatac ttcaacagga cctacctggg ggtggccgcg tcactcaacg ggggcaatgt 1081 gctggccacg ttcgtccaca tgctggttca gtggatggca gatctaggcc tggaggttga 1141 agaatccact gtgtattcac gcatgattca ggcagctgtg cagcagagag atacccacct 1201 gaccatcacc ccgacagtgc tgggggagag gcacctgccg gaccagctgg cctcagtgac 1261 cagaatctcc tcctccgacc tctccctggg gcacgtgacc cgggctctgt gccgaggcat 1321 tgttcagaac ctgcactcca tgcttccgat tcagcagctc caggagtggg gcgtggagag 1381 ggtgatgggc agtgggagtg cgctgtccag gaatgacgtg ctgaagcagg aggtgcagag 1441 ggctttccct ttgcccatgt cctttgggca ggatgtggat gcagctgtcg gggcagctct 1501 ggtcatgctc cggagacacc tcaaccagaa ggaatcttag acagcaaact ctttcgccaa 1561 acgactgctg tgaattttac ctgattaaca ttcctgacac catctgtggg tcatcctttc 1621 cctggaccgt tcagtggaca gctttcaagc agtgcttgtt gtgaggtccc atctcggcca 1681 agaacttacc ttcagaacat actctaataa tgcagccagg agccgtcagc cagatcccaa 1741 atgagtgcct tccgaaattg acccacctgg gagctattta caaatgtcca tgtgggagag 1801 agagagcatg agagcacagt agcccagcct gctggtcagc aggctcatct gtggttcacc 1861 tgtagacaga gagcagatca atgtgtactt cagacaccag aaagtctggt ggctttggtc 1921 ccaagtggga aaagagaact gccccatgcc cagcttgtga ttatcgtttt tggagacctg 1981 aagcccacac tcgggtcgta tggacttctg gaaaagttct tgtctcctgg actgaaccat 2041 gtgaccggag gcccctttcc tagtctcatc ctcccctggc tgcagatgct tagctgggcc 2101 agggattgac ccaagcgcga tgcagcaggc aggctcagaa gacgatgcgg ggctgtgtgc 2161 cggccttctt gctgcatgta ctcagcctca ggagagcttg ctgcacccag gccgcccagg 2221 tcttcacagc acaactgcct ggaaggcagg ttgcgagaag gagaggtgga tggcatgagc 2281 agcaaggggg accgatgctg tgcagctcac accactccag aacctgacaa ggcaccagca 2341 ggaccccttg ccaggagcat gtctgtgcag cagtgttttt gcccctgcac attccagaag 2401 ccctcatggg aagggatgca gccaggcaga ctcctgccag atggggcagg tagtttattc 2461 aaagagaact ctgtatccca taggcccagg ctctcctttc gcttggcgtg ggctttgctg 2521 gcccagtgtg tgctcctggc tcagcagaaa catccatttg agttggcatc cctgtaggga 2581 tcccagagcg ttgtaagcct tcttgtgatt ggtagggatg gctgtggggt ggcttccagg 2641 agggggccac cattgccgca tctacttcta gactcccaaa ggagcccagg ctcaggcagg 2701 cctggcccag agtcacgctg gcaaccacga gtttgggaag cagtcgtatt ctctctctct 2761 ctctctctct ctctctcagt atccatgaca ggtatgaaac atattgtctc tttataaatg 2821 tcattttaca aattatgtga ttatctggaa gctctaagat gagagcaaat gcctgatcac 2881 tctggccaaa tgtcagatac taaagcccat tcttggccgg gcatgttggc tcccgcctgt 2941 aatcccagca ctttgggaag cccaagtggg tgaatcacct gaggtcagga gttcaagacc 3001 agcctgacca acatggggat accccgtctc tactaaaaat acaagccggg cgtggtggcg 3061 catgcctgta atcccagcta ctcaggaggc tgaggcagga aaatcacttg aactcgggag 3121 gcagaggttg cagtgagctg agatcgcgcc attgcactcc agcctgggtg acagagcaag 3181 actctgtctc ataaataaat acaaagccca ttcttccaga gtcttgtgcc ttaaataaaa 3241 cacacctctc tgctgtggga agactgtgca atggcacagc cgcagagctt ggtttgggag 3301 gttgaagtgc tctggggaga attcgtagat catcctcaga aaagccttgc cctggtgttc 3361 taccagaaaa acgtctccca atcacccagg aaagctgtcc acagtagtcc ccccttatcc 3421 acggtgtcac tttccatggg ttcagttatc tgcggtcaac cacggtctga caatattaaa 3481 tggaaaattc ttcaaacagt tcccaagttt tcccttgtgc attgttctga gcagtgtgat 3541 ggagagtctc tgccgtgcca tctgggatgc aaaccgtccc tgtgttcccc acgtccaggc 3601 cgtagatgct ccccgccggt cagtcactta gtcgtcagat cgcccgtcct ggtatcacag 3661 tgcttctgtt caggtcagtc tttttttact tcattagggc cccaaagcac cagagtagtg 3721 atgctggtag tgatgctggc tgttcggata tgccaaagag aaaccgtaag gtgcttcctt 3781 taagtgaaaa gatgggaaga aaacagtcat atgctgaatc ttctatctgt gaaattct //