LOCUS AF113830 8006 bp DNA circular VRL 26-JUL-2016 DEFINITION Rice tungro bacilliform virus strain RTBV-G1, complete genome. ACCESSION AF113830 VERSION AF113830.1 KEYWORDS . SOURCE Rice tungro bacilliform virus ORGANISM Rice tungro bacilliform virus Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Caulimoviridae; Tungrovirus; Tungrovirus oryzae. REFERENCE 1 (bases 1 to 8006) AUTHORS Cabauatan,P.Q., Melcher,U., Ishikawa,K., Omura,T., Hibino,H., Koganezawa,H. and Azzam,O. TITLE Sequence changes in six variants of rice tungro bacilliform virus and their phylogenetic relationships JOURNAL J. Gen. Virol. 80 (Pt 8), 2229-2237 (1999) PUBMED 10466823 REFERENCE 2 (bases 1 to 8006) AUTHORS Cabauatan,P.Q., Melcher,U., Ishikawa,K., Omura,T., Hibino,H., Koganezawa,H. and Azzam,O. TITLE Direct Submission JOURNAL Submitted (16-DEC-1998) Entomology and Plant Pathology, International Rice Research Institute, P.O.Box 933, Manila, Luzon 1099, Philippines FEATURES Location/Qualifiers source 1..8006 /organism="Rice tungro bacilliform virus" /mol_type="genomic DNA" /strain="RTBV-G1" /db_xref="taxon:10654" /clone="G1-10" /geo_loc_name="Philippines" /note="greenhouse isolate from the International Rice Research Institute" CDS <68..667 /inference="non-experimental evidence, no additional details recorded" /note="ORF1; translation start site unknown" /codon_start=1 /product="P24" /protein_id="AAD30188.1" /translation="VPKRNLISQNIESRYEKLEFLDLAVWGKEKKQKYLLSTDNISFY CYFDTSKTSESERKHTFHSDNKQLNSIVDLIIKHSEKTKNIKEELEKYSQFLDKILDL KPTKKQVEKLLENQNLISKNFDYIKEQNTQLEKSLRKTVKLEDSINTLLVEIQQARPK EVELRTLKIAEQNSKAIEKFEQEIKDLREILEYLKHQST" CDS 664..996 /note="ORF2" /codon_start=1 /product="P12" /protein_id="AAD30189.1" /translation="MSADYPTFKEALEKFKNLESDTVSKDKFNWVFTLENIKTTADVN LASKGLVQLYALQEIDKKINNLTAQVSKLPTTSGSSSAGAIVPAGSNTQGQYKAPPKK GIKRKYPA" CDS 993..6026 /note="ORF3" /codon_start=1 /product="polyprotein P194" /protein_id="AAD30190.1" /translation="MSLRPFTGTSRTITQDSTSESNIKKGKNSTKRELIEEVDVNQEV ENFDWKKLSGIKPNKLYEKNWQEKVKLKQQSIVSAYKEEAISVTHNAYTTTLFPQEVI KNVKNQGKLYYHIGMMAIGVKGLHRRKIGTKVMIMFYDDSFGKAREASIGSIEMDMNA GCGVFYSCPDFAKYIKDLSHLKIGIQTLGYENYEGKNLSVAIKTIGRLTTNIQSKYKI NVKDIVEQISSQGIIMVAPMEIDSSHLDGNEWDLSKFLNHENTSRVPTKAFIYQNLQG GESLRFSNYKQTRMHDPTENNSDEDEDLKILGEQLNIKMARFYTMQTPEEELLEVIQQ LEREKQAMIEKLEAKMKESSKMAIVEDNFNPNNEYLEDTYSEYEDLEFEKLGLTGWED LDQDSIETEEITEWENPNRVLHREIRAYKSVSEQIEDIFGELLKEHGNYDMALKNLEE KYDLDKIEKAQSIEEIAKSSTSSEIRPTKRPKEEQTAYEDDMRDDWKRKELTVNPVEA SKDRNFERIGSSYKKNFYPSRSEILNLDNVPPQFYYDQLVTWEGIVKNEWEARKKDGM DMWSWMDGRITGLVLYLVQDWIAKNQAAYNDIKSRGDRPENFVKMVKDRFLIEDPTDE RRTALQRLAQRELEALNCEDPTKIQPFMAEYLKKASEAKKGFDVVYVERLFDRLPEAV GKVVKADFVKDGNSYEAGIGIAVSYISTWMRAKCIKETEAKTHKKASLAFCRSIYTIG DYKKRKILKRVTNYNKNRRKNYVRRPSIKKKCRCYICQDENHLANRCPRRYTNQARAS LIDGLDEDIVSIASDDEDIENFLEIIELDEFIAHSSQEHEHTWEIGGKKDKVCEICSY FTDYNKTVSCKICETQYCKTCADQLAIDVREVKKPTKEESMIEDLKLNVKNLEFRVTI LEHKAEMQKLQDKFETMQIRNKPEMTEISEATTSLAMRANESNYIKTSINKTAGCYVE TKISFNNENRIITALIDSGSTHNIICPTLIPASWINNTHREIIMFAVDNSKYNLNQEL IDDIKLQFQEVDETFGIKYKLGQTYVAPKPTKTFIIGHRFLTNENGSVTIHKDYITIQ KTTGIYPTARHELKSEFARKHGGRPPLFSNIPETYNKIPHLHSYQAQPILSYKNEIGN QSLITMVKELEALGFIGDDITKNRTTWVCDFKIINPDINITCATIPYTPADKEVFEKQ IKELLDNKLIKKADPTCRHRTAAFIVRNHSEEVAQKPRIVYNYKRLNDNMHTDPFNIP HKISMINLIQKANIFSKFDLKAGFHHMKLKDDFKDWTTFTCSEGLYTWNVCPFGIANA PCAFQRFMQESFGDLKFTLLYIDDILIASNNEKEHIEHLKIFFNRVKEIGCVLSKKKS KMFLKEVEYLGVEIKEGKISLQPHIVDKIKKFDKNKLNTFKGLQAYLGLLNYARGYIK NLSKLVGPLYKKTGKNGQRIFNKEDWNIIFKIEREVSKIKPLERPKETDYIIIETDAS EEGWGAVLVCKPDKYSGKDTEKIAGYASGNFGEKKTWTSLDYEIEAINEALNKFQIYL DKDFTIRTDCEAIVKGIKTEDYKKRSKTRWIKLRDNLLKDGYKPTFEHIKGNKNFLPN FLSREGDFILKCLQNPDSTESYSIDSSESIPLYNDSKESHSIESDDSIPLYRDKLLPL VERLKEKSA" CDS 6047..7216 /note="ORF4" /codon_start=1 /product="P46" /protein_id="AAD30191.1" /translation="MNIEYPYSIHIIDKNKVPIYDQGNLFHTEKSARLSHVSRGLLDH LFTFSSDNTERVRKLHILADYLYLLESERESYRNEWISLSDQVSLLQKQNSELRARIA TNKEIIEGLREPVKKPIYTTQDKERLRVFFCEERSMEYIYYHIKRLAQQSYYSHLNKL QKDCEPFRGIYMSFLTNVKFLVLCEAGYWTVPDIETNTTESLLSLSQKKGKDLLQKGV VIFNELEGGYQLSPRFIGDLYAHGFIKQINFTTKVPEGLPPIIAEKLQDYKFPGSNTV LIEREIPRWNFNEMKRETQMRTNLYIFKNYRCFYGYSPLRPYEPITPEEFGFDYYSWE NMVDEDKGEVVYISKNTKIIKVTREHAWAWPEHDGGTMSCTTSIEDEWIHRMDNA" BASE COUNT 3264 a 1245 c 1444 g 2053 t ORIGIN 1 tggtatcaga gcgatgttcg aactttaagg gaaaatagaa tacaatctag tcaaactaat 61 tacataagtt ccgaagagga atcttatttc tcaaaacatt gagtcacgat acgaaaaact 121 tgaattctta gacttagcag tctggggaaa agagaaaaaa caaaaatatt tactatctac 181 cgataatatt agcttttatt gttactttga tactagtaaa actagtgaat cagaaagaaa 241 gcataccttt cattctgata ataagcaact taatagtatt gtagatctta ttattaagca 301 ttctgaaaaa accaaaaata ttaaggaaga attagaaaaa tatagtcagt tcctagataa 361 gatattagat ttaaaaccta ctaaaaaaca agtcgaaaaa ctattagaaa atcaaaactt 421 aattagcaag aactttgatt atatcaaaga acaaaacact cagctagaaa aatcactaag 481 aaaaacagtt aagttagaag actccattaa tactttatta gtagaaatac aacaagctag 541 acctaaggaa gtagaattaa ggactcttaa aatagcagag cagaactcta aggcaataga 601 aaaatttgaa caagaaatta aggatctaag agaaatctta gaatacctta agcaccaatc 661 tacatgagcg ctgattatcc aactttcaag gaagcccttg aaaaatttaa aaacctagaa 721 tcagatacag tttctaaaga taagtttaat tgggtattta ctttagaaaa tataaaaaca 781 actgcagacg taaacctagc atctaaagga ttagtacaac tttacgccct acaagaaatt 841 gataaaaaga taaataatct tacagcccaa gtaagtaagt tacctacaac tagtggaagt 901 agttcagcag gagctatagt acctgcaggt agtaacaccc agggtcaata taaagcacca 961 cctaagaaag gaattaaaag aaaatatcca gcatgagtct tagaccattt actggtactt 1021 ctagaactat aacccaagat tcaacttctg aatctaatat aaaaaaggga aaaaattcaa 1081 caaaaagaga attaatagaa gaagtagatg ttaatcagga agtagaaaac tttgattgga 1141 aaaaattatc aggtattaaa cctaataaat tatatgagaa aaactggcaa gaaaaggtta 1201 agttaaagca acaatctata gtttcagcat ataaagagga agctattagc gtaactcata 1261 atgcatatac tactacttta tttccacaag aagtaattaa gaatgttaaa aatcagggaa 1321 aactttatta tcatataggc atgatggcca taggagttaa aggacttcat agaagaaaaa 1381 taggaactaa agttatgata atgttctatg atgatagttt cggtaaagct agagaagcta 1441 gcatcggatc aatagaaatg gatatgaacg ccggttgcgg agtattttac tcctgccccg 1501 actttgcaaa atatattaaa gatttatcac atcttaagat agggatacaa accctaggat 1561 atgaaaacta tgaaggaaaa aacctttcag tagcaatcaa aactatagga agattaacca 1621 ccaatataca atcaaaatat aagataaatg tgaaagatat tgtggaacaa atatcatcac 1681 aaggaatcat tatggtagca cccatggaaa tagattcatc acacttagat ggaaatgaat 1741 gggatctaag taaattccta aaccatgaaa acacaagtag agtcccaacc aaagccttta 1801 tatatcagaa tctacaagga ggagaatcct taagattctc aaactataag caaactagaa 1861 tgcatgatcc tactgagaat aattcagatg aggatgaaga tttaaaaatc ttaggagaac 1921 aattaaacat taaaatggca agattttaca caatgcaaac cccagaggaa gaattactag 1981 aagtaattca acaattagaa agagaaaaac aagccatgat agaaaaacta gaagccaaaa 2041 tgaaagaatc atccaaaatg gcgatagtag aagataattt caacccaaac aatgaatatc 2101 tagaagatac atattccgaa tatgaagacc tagaatttga aaaattagga ctaactggat 2161 gggaagactt agaccaggat tccatagaaa ccgaagaaat aaccgaatgg gaaaatccta 2221 atcgggtact tcatagagaa attagagcat acaaatcagt ctctgaacaa atagaagata 2281 tatttggaga attactaaaa gaacatggaa actatgatat ggcccttaaa aacttagaag 2341 aaaaatatga cctagacaaa atagaaaaag cccaatctat agaagaaata gccaaatcat 2401 ctacatcgtc agaaattagg ccaactaaac gacctaaaga agaacaaaca gcctatgaag 2461 atgatatgag agatgactgg aaaagaaagg aattaacagt aaatcctgta gaagcctcaa 2521 aggatagaaa ctttgaaaga ataggatcat cctataagaa gaacttttac cctagtcgaa 2581 gtgaaatatt aaacctagat aatgttcccc cacaatttta ttacgaccaa ttagtaacat 2641 gggaaggaat agttaaaaat gaatgggaag cacgaaagaa agacggcatg gatatgtggt 2701 cttggatgga tggaagaata acaggattag tcctatactt agtccaagat tggatagcta 2761 aaaatcaagc cgcctacaat gatataaaat ctagaggtga tagacctgaa aacttcgtaa 2821 aaatggtaaa agataggttc ttaatagaag atcctacaga tgaaagaaga actgcattac 2881 aaaggttagc acaaagagaa ttagaagcct taaactgcga agatcctacg aaaattcaac 2941 catttatggc tgaatatctt aagaaagcct cagaagccaa aaaaggattc gatgtagttt 3001 atgtagaaag actctttgat agactaccag aagcagtagg aaaggtagta aaggctgact 3061 ttgtcaaaga tggtaattcc tatgaagcag gaataggaat agcagtttca tacatatcta 3121 catggatgag agcaaaatgc attaaggaaa cagaagctaa aacccataag aaagcatctt 3181 tagcattctg cagatccata tatactatag gagactataa gaaacgaaaa atcctaaaaa 3241 gagttacaaa ttataataaa aataggagaa agaactacgt cagaagacct agtattaaga 3301 aaaaatgtag atgttatatc tgtcaagatg agaatcacct agccaataga tgtcctagaa 3361 gatataccaa tcaggctaga gcaagtctaa tagatggatt agatgaagat atagtatcaa 3421 tagcatcaga cgatgaagat atcgaaaatt tccttgaaat aatagaactt gatgagttta 3481 tagcacattc tagtcaggaa cacgaacata catgggaaat tggaggaaag aaagataagg 3541 tatgtgaaat atgcagttat tttacagact ataataaaac tgttagttgt aaaatttgtg 3601 aaacccaata ctgcaaaaca tgtgctgatc aactcgcaat agacgtaaga gaagttaaaa 3661 aacctaccaa agaagaatca atgatagaag atttaaaatt aaatgtcaaa aatctagaat 3721 ttagagtcac cattctagaa cataaagcag aaatgcaaaa gcttcaagac aaatttgaaa 3781 ctatgcaaat tagaaataaa ccagaaatga cagaaatatc agaagcaaca acttcattag 3841 ctatgcgagc aaatgaatca aattatataa aaacatcaat taataaaact gcaggatgtt 3901 atgtagaaac aaaaatctca tttaataatg agaatcgaat cataacagca ttaatagatt 3961 caggttcaac acataacata atctgtccaa cattaatacc agcatcatgg attaataata 4021 cacatagaga aattattatg tttgctgtgg ataatagcaa atataatctg aatcaagaat 4081 taatagacga tatcaaatta caatttcaag aagttgatga aacttttgga ataaaatata 4141 aattaggaca aacttatgta gcacctaaac caacaaaaac attcataata ggacatagat 4201 tccttacaaa tgaaaatggt agtgttacaa ttcataaaga ctatataact atacagaaaa 4261 ctactggcat atacccaaca gccagacatg aacttaaatc agagtttgcg cgaaagcatg 4321 gtggacgacc gccattattt tcaaacattc ctgaaactta taacaaaatt cctcatttgc 4381 attcatatca ggctcaacct atattaagtt ataagaatga aataggaaat cagagtttaa 4441 ttactatggt taaggagtta gaagcacttg gatttatcgg agatgatatt actaaaaata 4501 ggacaacatg ggtatgtgac tttaaaatca taaacccaga cattaatata acttgtgcaa 4561 caattccata tacaccagca gataaagaag tatttgaaaa acaaattaaa gaattattag 4621 ataataagtt aattaagaaa gctgatccaa catgtaggca tagaacagca gcatttatag 4681 taagaaatca ttctgaagaa gtagctcaga aacctcgaat agtttataac tataaacgct 4741 tgaatgataa tatgcataca gatcctttta atattcctca taagatttca atgattaatc 4801 tgatacagaa agctaatata ttttctaagt ttgatctgaa agcaggattt catcatatga 4861 aactaaaaga tgatttcaaa gattggacta cttttacatg ctcagaagga ttatatactt 4921 ggaacgtctg tccttttggt atagccaatg ctccatgtgc atttcaaaga ttcatgcaag 4981 agtcatttgg agatttaaag tttacattat tatacattga tgacatactt attgcatcta 5041 acaatgaaaa agagcatata gaacatctta agattttctt taatagagta aaagagatag 5101 gatgtgttct tagtaagaaa aaatcaaaaa tgtttctaaa agaagtagaa tatcttggag 5161 tagaaattaa agaaggaaag attagccttc agccacatat agttgataaa attaaaaaat 5221 ttgataagaa taagctcaat acttttaaag gactacaagc atatctagga ttactcaatt 5281 atgccagagg atatatcaaa aacctatcaa agttagtagg accactttac aaaaagacag 5341 gaaagaatgg gcaaagaatc tttaacaaag aagattggaa tataatcttt aaaatagaaa 5401 gagaggtatc aaagataaag cctttagaaa gacctaaaga aaccgactac atcattatag 5461 aaacagatgc ttcagaagaa ggctggggag cagtcttagt ctgtaagcca gataaatata 5521 gtggcaaaga cactgaaaaa atagcaggct atgcatcagg aaactttgga gaaaagaaaa 5581 cctggactag tttagattat gaaatagaag ccataaatga agccctaaac aagttccaga 5641 tatacttaga caaagatttt acaatcagaa ctgattgtga agcaatagtg aaaggaataa 5701 aaacagaaga ctataagaag agatcaaaga ccagatggat caagttaaga gataatctct 5761 taaaagatgg ctacaagcct acctttgagc atatcaaggg taacaaaaat tttttaccaa 5821 acttcttatc ccgtgaggga gattttattt taaaatgtct tcaaaatccc gattctacgg 5881 aatcatattc tatagattcg tcagaatcaa ttccactata taacgattcg aaagaatcac 5941 attctataga gtctgatgac tcaattccac tatacaggga caagcttctt cctctagtcg 6001 aaaggctaaa ggagaaaagt gcctaactaa gatcggaggc atcaccatga atatagagta 6061 cccgtactca atccacataa tagacaagaa caaggttccg atctacgatc aaggaaatct 6121 cttccacact gagaagtctg cgagactttc acatgtgtcc agaggtttgc tggatcatct 6181 ctttactttt tcgtctgata atactgagcg agttaggaag ctccacatat tagccgatta 6241 tctttaccta ctagaaagtg agagagagtc atatagaaat gagtggatta gcctgagtga 6301 tcaggttagt ctcctacaaa aacaaaatag tgagttgaga gctaggatag ccactaataa 6361 agagataata gagggactga gagagccagt caaaaagcca atatacacaa cccaggataa 6421 agagaggctc cgtgtcttct tttgcgaaga aagaagcatg gaatatatat actatcatat 6481 aaaaaggcta gctcagcaga gctattattc ccacctaaat aagttacaga aggattgcga 6541 gccctttcga gggatctaca tgtctttctt aactaatgtt aaatttctag tattatgtga 6601 agccggatac tggactgtac cagatataga aactaatacc acagagtctt tattaagtct 6661 atctcagaag aaaggaaaag atcttctgca aaagggagtg gtaatattta atgagcttga 6721 aggaggatat caactttctc caaggttcat tggagacctt tatgctcatg gttttattaa 6781 acaaataaac ttcacgacca aggttcctga aggattgccg ccaatcatag cggaaaaact 6841 tcaagactat aagttccctg gatcaaacac agtcttaata gaacgagaga ttcctcgctg 6901 gaactttaat gaaatgaaaa gagagacaca gatgaggacc aatttatata tcttcaagaa 6961 ttatcgatgc ttctatggct attcaccatt aaggccatat gaacctataa ctcctgaaga 7021 atttgggttt gattactaca gttgggaaaa tatggttgat gaagacaaag gagaagtagt 7081 atacatctcc aaaaatacta agattattaa agtcactaga gagcatgcat gggcttggcc 7141 agaacatgat ggaggtacaa tgtcctgcac cacatcaata gaagacgaat ggatccaccg 7201 tatggacaat gcttaaagaa gctttatcaa aaacaacttt aagtacgaat caataaagaa 7261 ggaccagaag atataaagcg ggaacatctt cacatgctac cacatggcta gcatctttac 7321 tttagcatct ctattattgt aagagtgtgt aatgaccagt gtgcccctgg actccagtat 7381 ataaggagca ccagagtatt gtaatagatc atcgatcaag caagcgagag ctaaaacttc 7441 taagagagca agagaggagc ttatcctctc aacccctctt caagaagcaa aggcgatcaa 7501 tggctcaggt cagtgagtag tcgtctttaa ggttcctcta ggaacctctg tgtaatatgt 7561 ttgtacttat gattgtattt ctcaaaacct atccgctgca tgaataaagc tcttatattc 7621 atcctacacc cttgtgataa aacatgaagt catactcgtt ctaagattaa gtgttctaaa 7681 aatacttcga agcattgaaa agggggctaa agggggaaaa agtaccgtca ggccgtgtta 7741 tggcaaggga agaagtacca tgaataccct ataaatgtta gaaggaagat aagaactaag 7801 tatcttatga acaatgagta gctgatttct gattatcatt aacaagtatc gttataatcc 7861 ataagctttg aaagatctgc tagtgtggat accaaaaggc tgtcgtggtt cgcccagtcg 7921 acggatgagg ttataaacga agcactagta ggtaactaag aggcttaggg atgagcaacg 7981 agaaaagtta ggggggtgcc tagaaa //