LOCUS AH006422 7245 bp DNA linear ROD 10-JUN-2016 DEFINITION Mus musculus strain 129/Ola alpha 1,2-mannosidase IB gene, complete cds. ACCESSION AH006422 AF078083 AF078084 AF078085 AF078086 AF078087 AF078088 AF078089 AF078090 AF078091 AF078092 AF078093 AF078094 AF078095 VERSION AH006422.2 KEYWORDS . SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 7245) AUTHORS Campbell Dyke,N., Athanassiadis,A. and Herscovics,A. TITLE Genomic organization and chromosomal mapping of the murine alpha 1,2-mannosidase IB involved in N-glycan maturation JOURNAL Genomics 41 (2), 155-159 (1997) PUBMED 9143489 REFERENCE 2 (bases 1 to 7245) AUTHORS Campbell Dyke,N., Athanassiadis,A. and Herscovics,A. TITLE Direct Submission JOURNAL Submitted (14-JUL-1998) McGill Cancer Centre, McGill University, 3655 Drummond, Room 708, Montreal, Quebec H3G 1Y6, Canada COMMENT On or before Jun 10, 2016 this sequence version replaced AF078083.1, AF078084.1, AF078085.1, AF078086.1, AF078087.1, AF078088.1, AF078089.1, AF078090.1, AF078091.1, AF078092.1, AF078093.1, AF078094.1, AF078095.1, AH006422.1. FEATURES Location/Qualifiers source 1..7245 /organism="Mus musculus" /mol_type="genomic DNA" /strain="129/Ola" /db_xref="taxon:10090" /chromosome="3" /map="3F2" /cell_line="E14 ES" source 1..727 /organism="Mus musculus" /mol_type="genomic DNA" /strain="129/Ola" /db_xref="taxon:10090" /chromosome="3" /map="3F2" /clone="6317" /cell_line="E14 ES" source 828..1266 /organism="Mus musculus" /mol_type="genomic DNA" /strain="129/Ola" /db_xref="taxon:10090" /chromosome="3" /map="3F2" /clone="6317" /cell_line="E14 ES" source 1367..1803 /organism="Mus musculus" /mol_type="genomic DNA" /strain="129/Ola" /db_xref="taxon:10090" /chromosome="3" /map="3F2" /clone="6313, 6317" /cell_line="E14 ES" source 1904..2242 /organism="Mus musculus" /mol_type="genomic DNA" /strain="129/Ola" /db_xref="taxon:10090" /chromosome="3" /map="3F2" /clone="6313, 6317" /cell_line="E14 ES" source 2343..2563 /organism="Mus musculus" /mol_type="genomic DNA" /strain="129/Ola" /db_xref="taxon:10090" /chromosome="3" /map="3F2" /clone="6313, 6317" /cell_line="E14 ES" source 2664..3004 /organism="Mus musculus" /mol_type="genomic DNA" /strain="129/Ola" /db_xref="taxon:10090" /chromosome="3" /map="3F2" /clone="6313, 6317" /cell_line="E14 ES" source 3105..3354 /organism="Mus musculus" /mol_type="genomic DNA" /strain="129/Ola" /db_xref="taxon:10090" /chromosome="3" /map="3F2" /clone="6313" /cell_line="E14 ES" source 3455..3796 /organism="Mus musculus" /mol_type="genomic DNA" /strain="129/Ola" /db_xref="taxon:10090" /chromosome="3" /map="3F2" /clone="6313" /cell_line="E14 ES" source 3897..4241 /organism="Mus musculus" /mol_type="genomic DNA" /strain="129/Ola" /db_xref="taxon:10090" /chromosome="3" /map="3F2" /clone="6313, 6314" /cell_line="E14 ES" source 4342..4762 /organism="Mus musculus" /mol_type="genomic DNA" /strain="129/Ola" /db_xref="taxon:10090" /chromosome="3" /map="3F2" /clone="6313, 6314" /cell_line="E14 ES" source 4863..5249 /organism="Mus musculus" /mol_type="genomic DNA" /strain="129/Ola" /db_xref="taxon:10090" /chromosome="3" /map="3F2" /clone="6313, 6314" /cell_line="E14 ES" source 5350..5746 /organism="Mus musculus" /mol_type="genomic DNA" /strain="129/Ola" /db_xref="taxon:10090" /chromosome="3" /map="3F2" /clone="6313, 6314" /cell_line="E14 ES" source 5847..7245 /organism="Mus musculus" /mol_type="genomic DNA" /strain="129/Ola" /db_xref="taxon:10090" /chromosome="3" /map="3F2" /clone="6314" /cell_line="E14 ES" mRNA join(1..668,946..1201,1566..1662,1988..2106,2413..2493, 2789..2883,3217..3340,3600..3693,3977..4092,4502..4721, 4943..5115,5496..5611,5920..7245) /product="alpha 1,2-mannosidase IB" exon 1..668 /number=1 5'UTR 1..366 CDS join(367..668,946..1201,1566..1662,1988..2106,2413..2493, 2789..2883,3217..3340,3600..3693,3977..4092,4502..4721, 4943..5115,5496..5611,5920..6052) /codon_start=1 /product="alpha 1,2-mannosidase IB" /protein_id="AAC34829.1" /translation="MTTPALLPLSGRRIPPLNLGPPSFPHHRATLRLSEKFILLLILS AFITLCFGAFFFLPDSSKHKRFDLGLEDVLIPHVDAGKGAKNPGVFLIHGPDEHRHRE EEERLRNKIRADHEKALEEAKEKLRKSREEIRAEIQTEKNKVAQAMKTKETRVLPPVP VPQRVGVSGGDPEDMEIKKKRDKIKEMMKHAWDNYRTYGWGHNELRPIARKGHSTNIF GSSQMGATIVDALDTLYIMGLHDEFMDGQRWIEENLDFSVNSEVSVFEVNIRFIGGLL AAYYLSGEEIFKTKAVQLAEKLLPAFNTPTGIPWAMVNLKSGVGRNWGWASAGSSILA EFGTLHMEFVHLSYLTGDLTYYNKVMHIRKLLQKMERPNGLYPNYLNPRTGRWGQYHT SVGGLGDSFYEYLLKAWLMSDKTDHEARRMYDDAVEAIEKHLIKKSRGGLVFIGEWKN GHLERKMGHLACFAGGMFALGADGSRKDKAGHYLELGAEIARTCHESYDRTALKLGPE SFKFDGAVEAVAVRQAEKYYILRPEVIETYWYLWRFTHDPRYRQWGWEAALAIEKSCR VSGGFSGVKDVYAPTPVHDDVQQSFFLAETLKYLYLLFSGDDLLPLDHWVFNTEAHPL PVLRLANSTLSGNPAVR" gap 728..827 /estimated_length=unknown exon 946..1201 /number=2 gap 1267..1366 /estimated_length=unknown exon 1566..1662 /number=3 gap 1804..1903 /estimated_length=unknown exon 1988..2106 /number=4 gap 2243..2342 /estimated_length=unknown exon 2413..2493 /number=5 gap 2564..2663 /estimated_length=unknown exon 2789..2883 /number=6 gap 3005..3104 /estimated_length=unknown exon 3217..3340 /number=7 gap 3355..3454 /estimated_length=unknown exon 3600..3693 /number=8 gap 3797..3896 /estimated_length=unknown exon 3977..4092 /number=9 gap 4242..4341 /estimated_length=unknown exon 4502..4721 /number=10 gap 4763..4862 /estimated_length=unknown exon 4943..5115 /number=11 gap 5250..5349 /estimated_length=unknown exon 5496..5611 /number=12 gap 5747..5846 /estimated_length=unknown exon 5920..7245 /number=13 3'UTR 6053..7245 BASE COUNT 1714 a 1164 c 1299 g 1867 t ORIGIN 1 catggcagaa cccaccttgc agcttctctg cggtgtggct cgcccgatcc actctcggga 61 atgaagagga gactcgcgat catccggtga ggcaccgaga gccaaatggc gagaagatct 121 gacgggacag aaaccaacga tcgcttggga ggtcacccgg gcttctggat gtaatcggag 181 agcgtgaaag aggtggcctc gtaaataata ataataataa aaaagcacaa caatcctttg 241 agaggaggga aattgagttt attctttttt ttttttttgg ccgaggtttt gagaaacggt 301 tcgatgtgtt gtacgtttga tataagatga gaactttata aagtattccg tccaagagcc 361 taaacgatga ctaccccagc gctgctgccc ctctctggtc gtaggatacc acctttgaac 421 ctggggccgc cctccttccc acatcacagg gctaccttga gactctccga gaagtttatc 481 cttctcctca tccttagtgc cttcatcacc ctgtgttttg gggcattctt cttccttcca 541 gactcttcaa aacacaaacg ctttgatctg ggcttagaag atgtgttaat tcctcacgta 601 gatgccggca aaggagctaa aaaccccggc gtcttcctga tccatggacc cgacgaacac 661 agacacaggt tcgtttgtta cttaaattat ggtacttctt ttgggagagc aaggtacagt 721 tcactcgnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 781 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnngat aatttttacc 841 ttttaatgtg gggactagaa aacaagcctt agagtttagt aggagaattt taaggtgtta 901 agtactactc tgaccttttt tttttaattt atttttattt cccagggaag aagaagagcg 961 tctgagaaat aagattagag ctgaccatga gaaagccctg gaagaagcaa aagaaaaatt 1021 aagaaagtca agagaggaaa tccgtgcaga aattcagaca gagaaaaaca aagtagccca 1081 agcaatgaag acaaaagaga ccagggtact gccgcctgtc cctgtcccac aacgtgtagg 1141 ggtcagtggt ggggatccag aagacatgga gatcaagaag aaaagagaca aaattaaaga 1201 ggtaataagc tgaggttggt gatccagaga catgcagttt tgtggctgac tggacactgt 1261 ggtgttnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1321 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnttgt gtcaagttga 1381 catcagagta gccagcacag taggtatgtg tgtttttata ctgaaacatg ttaattgagt 1441 aatatgctag tgtatgaaac attgcagaat gggtaaaaat ataatatccc aactctaaat 1501 tatatgagga ataaagcagt ttgtggatag cttcaaatgg tgtattacaa tttttctctt 1561 ctcagatgat gaaacatgcc tgggataatt acagaacata cggatgggga cataatgaac 1621 taaggcctat tgcaaggaaa ggccattcca ctaacatatt cggtaaggta acttctttga 1681 attacttccc acccccacct cctatctttt aaaacaaaat ctggctttta aaagtactct 1741 ccaaggtctc tgattctgtg cagttataat atgaactttt tgtttttgtg tgtcaagatt 1801 tagnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1861 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnttagtag atattgttgt 1921 tcttcttttg gggttgccgt ctgaagggat gtttttaaca acagctgttt cttcctccta 1981 aatataggaa gctcacagat gggtgccacc atagtggatg ctttggatac cctttatatc 2041 atggggcttc atgatgaatt catggatggg caaagatgga ttgaagaaaa ccttgatttc 2101 agtgtggtgt gtataccttg gcaatttatc taatccctta actataaaag gacagtttaa 2161 tgctctgatc tgggatattt gtatcctctt aaattcatat taatcactca tgtgttggaa 2221 ctggaaaggt tctttgggta gtnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2281 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2341 nntaaaaaag taaaaacttt gaaaactgtg aagtactaca tgtatgtgtg tattttcact 2401 ttgtctccac agaattcaga agtgtctgtc tttgaagtta acattcgctt tattggaggg 2461 ctcctcgctg catattacct gtcaggagag gaagtgagta gagtcaagta atactttgtt 2521 ggtttgtttg attagaagag atatgaatgg tgtaaaagaa aatnnnnnnn nnnnnnnnnn 2581 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2641 nnnnnnnnnn nnnnnnnnnn nnnaaggatg atgtgtgact gcttaccaca cgccttctta 2701 taacgtgtac attgtggtgt gcatacggca agaggtagta atgcgcagta cttactataa 2761 ttgatgatta tttgtgcttt cgtctcagat attcaagact aaagcagtgc agttggctga 2821 gaaactcctt cctgccttta acacacctac tgggattccc tgggcaatgg tgaacctgaa 2881 aaggtaaaca gtattttatt tgattattta tgttccagaa ttgttaactg aattttgaca 2941 tttttgttca tggagatttc caattagcta ttccactatg ctttcaagtc ttactatttt 3001 ttttnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 3061 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnaataaa caaaattaaa 3121 ataaactatt atattagata taatttctaa gatctattta agatgcatgt gtttcccttt 3181 caataatcct gtctctttct atcccttatt actcagtgga gtaggtcgaa actggggctg 3241 ggcgtctgca ggcagcagca tcctggctga gttcggcacc ctgcacatgg agtttgtgca 3301 cctcagctac ttgaccggtg acttgactta ctataataag gttcgtctct gtccnnnnnn 3361 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 3421 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnncagaag cccttcctaa ccaccacaca 3481 cagcaaggta gaaggtgggt gtaggttcca agtgagggga aaaccgcaga cgcaggctaa 3541 tggaaagctt ggtgacacct gctttttatt aattacattc ttaacttcat tttgattagg 3601 tcatgcacat tcggaaacta ctgcagaaaa tggaacgccc aaatggtctt tatccaaatt 3661 atttaaaccc aagaacaggg cgctggggtc agtgtaagta tttctagtac aactgctgac 3721 ttgttaaaat gattattaaa aagtctttgc cttgatacag tgaaaggtga gccatatgga 3781 attaaaaccc caaaccnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 3841 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnatat 3901 attatataaa atattattgt aattgtcttt atcttctttt tccctcactc ctatcctctt 3961 ttctcttttg ctacagatca cacatcagtt ggtggtctgg gagatagttt ttatgaatac 4021 ttactgaaag catggctgat gtcagataaa acagaccacg aggcaagaag gatgtatgac 4081 gatgctgttg aggtaactat tgttttgagt cttttcttat agtgaatata tgtacttggt 4141 actagatagt gactacacaa atgtaaccgt tttattatag gcatctagga agtacatgta 4201 ctatatattg tgttcattca ctgttgaatt tgatggtatt tnnnnnnnnn nnnnnnnnnn 4261 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 4321 nnnnnnnnnn nnnnnnnnnn ntttcacacc tcagttagca atccagagag aggagccatg 4381 gcctcagaca actgatctgg ataattcctt actaagactc ttcataggtg attttacgtt 4441 gtttcaggtt aacagttgaa actaaaaagg tttgtgtcta aatcgtttct ttttcttgta 4501 ggctatagaa aaacatctta ttaagaagtc ccgaggaggt ctggttttta ttggagaatg 4561 gaagaatgga cacttggaaa ggaagatggg gcacttggcc tgctttgctg ggggaatgtt 4621 tgcccttgga gcagatggtt ccagaaagga taaagctggc cactacttag aactaggggc 4681 agaaattgca cgaacatgtc atgagtcata tgacagaact ggtaagaata ttttgataat 4741 gctagtgact tagtctaaca tannnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 4801 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 4861 nntttagaaa gaacagtaag tattccttaa atcacacaca ttgtttatgt ggcttttttt 4921 ttttcttttt ttaatgttac agcattgaaa ctaggtccgg agtcattcaa gtttgatggt 4981 gcagtggaag ccgtggctgt gcggcaggct gaaaagtatt acatccttcg tccagaagta 5041 attgaaacct attggtatct atggcgattt acccacgacc caagatacag gcagtggggc 5101 tgggaagcag cactggtaaa tacgccaaat tctcctcttg tctgtgctca ctgggtagag 5161 ctgttccctg taccgtttgt cctcctcccc atgacttgat tttgagaact gtgcactttg 5221 atttctctgg tgcagaaact gttctcattn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 5281 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 5341 nnnnnnnnna attcagacag atctatctat gtacctcatg agggctggat gaggcccatc 5401 ctttctatga atgtttcttt tgaatacagg ttttgacttg tctttcagaa ttgaaattgc 5461 acagaatgaa ttgtcttctc tgctctccct cacaggctat tgagaagtcg tgccgggtca 5521 gcggtgggtt ttctggtgtc aaggatgtat acgccccgac ccctgtgcat gacgacgtgc 5581 agcagagctt ttttcttgct gaaacattaa agtaagcaca tactcaaaag ggttttaagt 5641 aagctgcttt taggtgctgt atgaaaataa aagctgaccc caatactgag acaatgtatg 5701 tggttgccat acagatatat atacatatat gagtaatgtt taaatcnnnn nnnnnnnnnn 5761 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 5821 nnnnnnnnnn nnnnnnnnnn nnnnnntttt ctctgcagtc cccagtgagc ccacttggtt 5881 tctgcggcat tgactcgtgt tttgtccttt tcttttcaga tacttgtacc tgctgttctc 5941 tggcgatgac cttctacctt tagaccactg ggtgtttaac acagaggcgc accctctgcc 6001 ggtgttgcgc ttagccaaca gcactctttc aggtaatcct gctgtccgat gagcacagcc 6061 ccagaaggac cattcttacc tgtgttttgt ttacatggac cactacagag actgtctgca 6121 gaggagaggc ggctgtggga aactgggact cttatgtcag tatgccggat gaaactcttc 6181 cctgcaagac ttttcacttg tacatatatc aactttgaaa ttattccatt ttatacctga 6241 ccaaaacaag ttctggtaca tgtaggacag agacctgatg tgttttgatt cttactgaga 6301 tggccacatg agaaacaatg tcttattcta tactgtcagt gcaagtcaag accatagagc 6361 accttacagg agctagagat ggctttttga accagttata catttgtttt ctcccacagt 6421 ggagcagctc tcaaatcaaa tataacacat tgtgtagccc ctttcctcca ttttaacaat 6481 ggaacaaacc gaatgagcag gaaccgagga acatgtaact acattgtagc aagaagactt 6541 gggaaagaaa caaacagata ctggccctgt ctgaattttc cagctcctca ttggattttt 6601 accagactgg caaccatttc attcccaacc taggcattga aatctgttta gattgagytt 6661 ttctctgagg ggcatgatct catgaagaat atttttcaag tcgttgtctc catataatat 6721 gctgaacctg gtatttatca taactgctgc ttatgagccg gagtgtggga gtgtgcatgt 6781 agctcacgct agcattggga gcatgatgga aggagggaag gtgccagatt gttgccttga 6841 aatctgtttt agagaaatcc ttaattattc ttctgaatca gcaactatat caagcaaaca 6901 ttttctgctt taatctcata acacacttaa tagagtcatt caccttacaa ctccatgtgg 6961 ttcggcaaaa ttgactctac tgttatgcag ctctgtattt gctagaacaa acctaatcgc 7021 ttttacaact tactaaagca aaggcaaaac atagcaatgt cccttgagta gggtcaggtc 7081 cttcactcat tacctcacac gtgtgatctg ttcacaaaga gtctatgttt ttaagtttct 7141 ccaagatatt atccatccaa agaattacta gaatagcttc ggaataattt tcagtggcaa 7201 atgtgtgacg taaagaatca tactcactaa aattggcatg aacct //