LOCUS AF074020 9429 bp DNA linear ROD 24-AUG-2004 DEFINITION Mus musculus integral membrane protein 2A (Itm2a) gene, complete cds. ACCESSION AF074020 VERSION AF074020.2 KEYWORDS . SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 9429) AUTHORS Pittois,K., Wauters,J., Bossuyt,P., Deleersnijder,W. and Merregaert,J. TITLE Genomic organization and chromosomal localization of the Itm2a gene JOURNAL Mamm. Genome 10 (1), 54-56 (1999) PUBMED 9892734 REFERENCE 2 (bases 1 to 9429) AUTHORS Pittois,K. TITLE Direct Submission JOURNAL Submitted (24-JUN-1998) Biochemistry, University of Antwerp, Universiteitsplein 1, Wilrijk B-2610, Belgium REFERENCE 3 (bases 1 to 9429) AUTHORS Van den Plas,D. and Merregaert,J. TITLE Direct Submission JOURNAL Submitted (24-AUG-2004) Molecular Biotechnology, University of Antwerp, Universiteitsplein 1, Wilrijk B-2610, Belgium REMARK Sequence update by submitter COMMENT On Aug 24, 2004 this sequence version replaced AF074020.1. FEATURES Location/Qualifiers source 1..9429 /organism="Mus musculus" /mol_type="genomic DNA" /strain="BALB/c" /db_xref="taxon:10090" /chromosome="X" /map="between 44.4 and 51.5 cM" gene 2650..9143 /gene="Itm2a" mRNA join(2650..2904,6314..6445,6719..6916,7131..7241, 8092..8242,8359..9143) /gene="Itm2a" /product="integral membrane protein 2A" 5'UTR 2650..2793 /gene="Itm2a" CDS join(2794..2904,6314..6445,6719..6916,7131..7241, 8092..8242,8359..8447) /gene="Itm2a" /note="ITM2A" /codon_start=1 /product="integral membrane protein 2A" /protein_id="AAD14549.2" /translation="MVKIAFNTPTAVQKEEARQDVEALVSRTVRAQILTGKELRVVPQ EKDGSSGRCMLTLLGLSFILAGLIVGGACIYKYFMPKSTIYHGEMCFFDSEDPVNSIP GGEPYFLPVTEEADIREDDNIAIIDVPVPSFSDSDPAAIIHDFEKGMTAYLDLLLGNC YLMPLNTSIVMTPKNLVELFGKLASGKYLPHTYVVREDLVAVEEIRDVSNLGIFIYQL CNNRKSFRLRRRDLLLGFNKRAIDKCWKIRHFPNEFIVETKICQE" repeat_region 5997..6178 /gene="Itm2a" /rpt_type=direct /rpt_unit_range=5997..6008 repeat_region 6009..6166 /gene="Itm2a" /rpt_family="LINE 1" 3'UTR 8448..9143 /gene="Itm2a" BASE COUNT 2932 a 1766 c 1804 g 2927 t ORIGIN 1 gatcccctcc agtgtccaaa gacaaagttg agacattgat gctaagaaac aagaagttgc 61 ttctgtgaag gaaacaactc aaaaaatagc ttagtcaatg tgaaacatgt tttttagtag 121 atagaaatgt gttcattgga ctttcatttt aagcatatat ttttgaaaat tttacaaatg 181 ctggaaccac ttcttgaaat ggacaaatag ttattaacat aggaggttat tgctaaaata 241 ttatttcaaa atgtgcacaa tttcctacat gcttttgtgc atatgcacag agagagagag 301 acagagagac agagagagac agagcgagac agagacagag agagacagag agagacagag 361 actgggatac ataaatggtg gggggaggta agaatggcat ctgacaaaat gacaatatgt 421 ctgcattaca tattgccaac agcagcaaag attctttggg aggtatgact ggcattctga 481 aaaggagcat agtactaata attaaaagat ggcagttaaa ccattcaaaa gaagttatat 541 ataaataaaa gtgactatgc ttaggagttt aactttgtcc aggaagacct atatctagac 601 actgaggttg tttaaaagtt atagaaacag aaagattttt aagaactcat acataaacag 661 gctctataag cttgaaatat gtatatgcta cagattcaaa ttaagtccta gggtaaccaa 721 ccatgtcatt ttcttttact tttctgaata atacaatgtg gacttcttcc tgcattctca 781 tacatgatct cccaacagca caattcagag gaggaaaaat ggtgcctaag gagatcaggt 841 agtttaccta atgctacata ccaagcaagt gaccaaacgt tctctttggt agttatcaga 901 gtttgggtct cttctttgaa caaatggaaa aaaaaattcc tgctcctcct gccttaccgc 961 atttcaggac agaaaatagc atcttgttat ctgatcagct gcttgcattt agtaggtaag 1021 tgtgtggaaa taggtatgca tcagtgatgc aggtggtgtg ggtcagtgta gtacagatcc 1081 taactaagtg gtcataaagg tgaatcccaa cagagggcaa ctgaaaagag aaacataccg 1141 ggaaaactga ggttttctat gccaaaacta aggattgcct gacaaatgtt gaattatgat 1201 agtcagactt aggtaaaaag tgaaagagca aaagatgcca gtatttctaa gtaaactctg 1261 acatcctgct tctaaggtcc tgaccctgtg caaggcacaa gctccttact gttcctctcc 1321 atccaccttc ccatctgtga cctatcagag aatatgaact ctgtctttgc aaagccccca 1381 cagtcaagac aggagagggc tttagaggca aaacaatctc catgggaaaa actccaagtt 1441 agaatttctt ggacagaagg gaagcaactc agcatattca agtctgttca gttaagttga 1501 tgagtaggtg gggaattctc tagtaaaacg gtgttttgtt ttgttttgtt ggggctttgt 1561 tttgtattgc tcccttcata caacagacct ctattctgtt ttatgtagca agactattta 1621 taaactctct accaccaact ctaaatcacc agccaccaca gcttgaattt cattagttag 1681 gctctttatg tcaccagttt aagagagctg actgaagaaa cactttaact ctactagacg 1741 gatatccatg taaatcttca caatgctttg taagccagtc cgtcagatag ttttcctatg 1801 agagccacac cagcatctgg ttatattgtg tatgccctac atccctgaac acataggtac 1861 acacacccct gcttccccct acccaccccc cgctggttac acagctggtg gctgaagaga 1921 aacaggctct gggctgagac cttactctgg ctatcccgat cagggagaaa gaaatctggg 1981 ttatttcact gattcattag gaaagagctt tctaccctcc cttctctgga tcttatcatg 2041 tcctgtctgc aaaatgagga gttagggaga caaaagcccc gtcttcctca tctaacattg 2101 ctttaagttg gaaaaataaa attataaaag aaaataaaaa gcatgaaagg aaaaacaatg 2161 ttgactatga aacaagcaac tacaaactga cttctgggtg ttctttaaac ggaagatagt 2221 ctaaaggtgt agaacagtca gggaactgtg ctttctggcc tgggtgggtt gcagaactca 2281 gaaaccttgg gttggctcca agttacagtc cctggccccg cggggggcca ggcccaagtt 2341 tgggaaaaca gagtcagggg ctattgtggt ccagacagaa cgagaaagac acgacaggca 2401 agcttccttc ctgccttgct cttatctgag ggtgcagaag gcagtaggag catgcctggg 2461 gtgcaggtga ggcatgtcta ccctaagccg gccatcagct ccagttcccc tctctttcca 2521 actaagcagc tacccacccc cactcggttg cactgcagag ctcgggcccc ctcccgctcc 2581 tccctcagca cctccctggc cccgcccacc ctctcccacc cagcctggga ctgcgtcata 2641 agtaagccca gacctgagct cgctgctgcc tgtggaagac tgggagagga gacactaagt 2701 gctgctcaag caagcgcgat cctctcctct ttcaacctgc agcccaagat actgattcga 2761 gccgcgcctt accgcgcagc ccgaagattc accatggtga agatcgcctt caacacccct 2821 acggcggtgc aaaaggagga ggcgcggcaa gatgtagagg cgctcgtcag tcgcactgtc 2881 cgagctcaaa tcctgactgg caaggtagtt cccactgggc ccacctctgt cttctggggt 2941 ttggggatgg agagaaaagg gggaatatgc aggtgcagag agtaaactgt tggctgccct 3001 gcagcggagt tccaggcagg ccaatctgca ttgagttgag tgggtcacct tttactctgc 3061 ttcaacttat tccctctgca tccatgcgat tctatcgctt aacaccacct accccaggga 3121 agttgttgga aggagtttga agaaattcct gcatgtcatt tgttctgaga aatgggttat 3181 ggaattatcc agagaagcaa ttatagctac aggggccgag cagccacacg gagtgaacaa 3241 gggcaagaga cttaactgtt ctttattttt gacatgggta aagttatatg aatctctgtc 3301 tttgtaggac tgcttttgtg gcggttgaat ggaggcaagg ggcagcctga actccaaact 3361 gtatgttctg gggaaagtgt gtttctgcac gcgcatgagc gcgcgcgcgc gcgcgtgtgt 3421 gtctgtgcac gcgcgcgcgc acaccacccc cccacacaca caattttagt tagtgttaag 3481 ggttagataa tggagctatt aaaacatata ttggttttaa ttcttgataa atcacgttta 3541 aaaataaaat ttgagatctt attgtttttg gttgttatta ttttttactt tttattattt 3601 ttttagcaat atccctcata tagccatgtg aagcatatcc atgttgctat ttaaacaatt 3661 cattttccag gcactggaga agttctctct tcctaggttg ttcatctaga caaatttata 3721 tttcctttta atgccaacca tgtttgtagt gtcgataaac tctttttcct cagttaaatc 3781 ttagtttgaa aaagtgataa tattttcttc tacttctgtg gaatctgcag tactggagct 3841 cgatctgcct taacttgtcc tggtgtcttt agagagtttt ctcttctagg ttcagactgg 3901 atatttgaaa agtgctttga gtgacatctg aatgcatata gtaaaacata attatgcata 3961 caatttggaa tgccaatgtg cgctgccgca gaactttcat catggaaact tccgatattt 4021 aactgcaatc aaactagctt ttgtgtatca cacattttag aactcaaaag taacaccccc 4081 cttgcattgt tgaggtttta attaaatgac acaaggtcaa aaatatgtag ttgtcttcct 4141 actaactttg taaatgaaac acggccagat ttgaggggag gtctaaggag atgccagttg 4201 ttaaaaatag ccacacagta atcctttttt cccctcgcca ccaaaaactt catgacttgt 4261 agaaagattc aattaatatg taatacttct gccagtcctg tggtgtgatg gggactaaat 4321 aaaaacaaac ctttcacttg attatatttt ttgttaggtt tcagagaagc ggcaatagaa 4381 tcctgtcctg gccccctttg tcagtaaaac catgacacat tactttgcga tatatggatt 4441 aggtctgatc aacagagaat gaacacattg gactgatatt ggcaagtgat atacagtaac 4501 ttttaaaata cacttcaaaa agaaattagc tatgataatc aattcgttca actacaccga 4561 atctcacaaa gttaaacgaa aacaaaagaa atccttgttc ctcctaaata gggacctcta 4621 gtgaaaccga gaccctcata ctttagccat actaaacaat aaacttcctg aattattgga 4681 aaagagatat gaaattacag ttcaaattgt tcttctgtct caataacaaa aaatttcatt 4741 gctcagagaa tttcaaatta agctattatg tgccttttag caagtcattt catatttccg 4801 cacctaaatt taattataca aaatgtctcc tgagatccca cagttctatg acagtagttt 4861 ccaatcaaaa tttaaagttc agtttctgta gtgttcagta ttatatagac ttttaaggaa 4921 aataattaag acatttcagt atgtgtagaa tctaactgat gaaataagct taaataaatt 4981 ttattaaaaa tatgaatctc aaattttgac ctctaaatta aaaaaaaatc tttattttga 5041 aaacaaaatt atcaaatgat tttctaccca tgcttattcc atattaacaa gcattttttt 5101 ttaccaaatt taatataagg gcagttaaat atccaagtat tatagcaatt tcatgaaaaa 5161 ctccaatgga aggccaacga aaataattgt ttaatatcag cttgggttat cagggctgag 5221 attgcctgac ttcactaatt ctatcgtcga gatgtaatgt ggccgaggag tatgttgtga 5281 catgcaaatt taaaatggca cgccttgcag ctccatgccc tataattaat tgcttccttt 5341 ttgttttgga tctttctttt gagaattcat cagaaaatta ttgatttcat agaatgttta 5401 aattactgct tcacagacag ctcttgtatg tagcatattc tctacattca caactagtgt 5461 ttaatctaag acttggaaaa taacattagt gtagtctaca gaggaatgga taatgccagc 5521 aagcagtata cttactaata aaattaagaa tagtaattaa tcaatttcta aaatgaaagg 5581 taataactct tttccaactt gacaataaag ccaacaaact gaaggttact aacattcttt 5641 taacttaata aactgatttc aaaacaaata gctaagagtc tatttctata ttctagaaag 5701 ccagtgttca caaaaaaaaa aacctagttc caatcactta aagaacatac tttctagaga 5761 caagctatac tatatcatat ctatagttaa aaatactgtt gcatccatta aacatgtgtt 5821 aaaggggtag gcctatatta agtgttttta ataaaaatat gtcattatat aaattaatga 5881 ttattttaat ataattctac aaatgaatat tttgaaataa tgctatattt ctatttaagt 5941 ttgaaaatgc caggaggaag gctggggtag gtgaagatac tctctatata tgcatcagaa 6001 attgtcttgg gagtgggcgg gtaggggagt gggggtgggt gggtatgggg gacttttggt 6061 atagcattgg aaatgtaaat gagctaaata cctaataaaa aatggaaaga aaaaaaaata 6121 tttcctattc tataggctgc caaaaaaaaa aaataaataa ataaaaagaa attgtcttga 6181 agtaatattt gattggaatg tctttgttta tttttaaaat atcttgattt ttaggggtga 6241 taaattgcac acaaaagcaa gtgtctaaaa gtttaattgt ggtttgtttt ctattttgcg 6301 ttttaatgaa taggagctca gagttgtccc gcaggagaaa gatggctcat ctgggagatg 6361 catgcttact ctcctaggcc tctcattcat cttggcagga ctgattgttg gtggagcctg 6421 catttacaag tacttcatgc ccaaggtaat agttctaatt cttaacactt tgaattacta 6481 attgccatgc atttacttat cggcctaaat aattatgtaa tggtaaccag agaaagtgaa 6541 gacttgaacg ctttcaaatt accattcaat ctctgctatt gcttaggcct cacgatgcta 6601 actataatga agtagcctca gattgacaca gtacaatgaa ctgacatgaa tctaagaaat 6661 aaatgcaagt gcgtggtgaa tattagaaaa tttttacttc cccattttta tctcatagag 6721 caccatttac catggtgaga tgtgcttctt tgattctgag gatcctgtca attccattcc 6781 tggaggagag ccatactttc tgcctgtgac tgaggaggct gatatccgtg aggatgacaa 6841 cattgccatc attgatgtgc ctgtgcccag tttctctgat agcgatccgg cggcaattat 6901 tcacgacttt gagaaggtgc atttctcttg cttgcagcta tttacgaatt ttttttccct 6961 ccagtactgt aaggcaatga atctattcat aaatgaacat cttttcaaag caaagtcctt 7021 tcactatgtt gtgattgcat agaaagtggt gaaattttca agctgtttgt tcaaaaggtt 7081 cttagtaaat ctgcaatatt aatacccatc ttttcccacc tccccaacag ggaatgactg 7141 cttacctgga cttgcttttg ggaaactgtt atctgatgcc cctcaatact tccattgtta 7201 tgactccaaa gaatctggtg gaactttttg gaaaactggc agtatgtatt ttagagatca 7261 aatttttcta taagcatttc caaataattt tgcttcgtta ttctaaaaag ttaatgagtt 7321 gggccagaca ttccattttc gttgaaacat ttttgaatga aacatttttg aacgaaaagt 7381 gtgtgctgtg ccaaaataga tggaactgaa gtattttata ttaagtaatg taagccagtc 7441 agacagacaa gtactttatg ttctccttca tatgtagtag ctaaaaatgt tcacctgaac 7501 acagaacact gattaatagc ggttgagaag ggaaagtgtg taggaggagg tggataagga 7561 gaggttggat ttgatcaatg catgcagtgt gtgtgtgcaa atagcacact gaacttgaaa 7621 cccataaaca catgtgtgta taataaaaat agtatagtat ataaaacttc taaaatgaat 7681 tcatcccctg acactttgta ctcatacatt gaaatgcatg aataaacaaa agtgtcagac 7741 agagatcatc accagtgtta aatgtgcaaa gttgtttcac tttgtgttta tcataatgaa 7801 tcatattagg gttgattttc tcaatccact agtttctaga gtttagacat tatccagtga 7861 aaatacaatt tcctcctctc taaaaaatat gtttatcata tattcctgtg ttgaccagta 7921 tgtcaggaac aacactgaat agatacaaaa accatcactt cttttgtgac tcactattac 7981 acataatgaa ttccattttt aataatgtct atttttaaaa gactataagt agggatttaa 8041 atactgtctt taagaatgtg tcattttaat ctctcttgat atcatttata gagtggcaag 8101 tatttgcctc atacttatgt ggttcgtgaa gacctggttg ctgtggaaga aattcgtgat 8161 gttagtaacc ttggtatttt tatttaccaa ctttgcaaca accgaaaatc cttccgcctt 8221 agacgcagag accttctgct gggtaggcaa tttattacta ttggatgagt gatagagagt 8281 gaggggagac tgcatcagaa tagcatttct caagcacagc aaactcacaa gtcacttttt 8341 ttttttatgc cttcacaggt ttcaacaagc gtgccattga caaatgctgg aagattagac 8401 acttccccaa tgaatttatc gttgaaacca agatctgtca ggagtgaaat gtgacagata 8461 aagagtatcc ttgataataa gaagtcagga acttaccgtc tgacttggaa aattgaaatt 8521 gatgggatac tcatgctatt tactcataca tttactctat tgcttatact ggaaaaggaa 8581 agggaaaggg gggagaaaac tactaaccac tgcaagcgat tgtccaattc tactttaatt 8641 gacattgctt gctgttttca acaagtcaaa tgattatctt ttctcttgaa tttatagggt 8701 ttagatttct gaaagcagca tgaatgtgtc atcttaccat cctgacaata aagcccatcc 8761 tctggtttta tttaaagcaa gctctttcca acatcacttg gctagagcat gctttaaatt 8821 taaaatattt gaaatttgtt tttgacattt ttttgtgtga aacatgtcaa atctcttacc 8881 attctttggt tttcttcttt attatgttca actctcctga tttcagaagt tacatttttg 8941 catttctatc aggtgctgtg taacgaatct gactgatatg tgaacaatct tcatgaggaa 9001 gcaatttttt actcatgtaa tgattctttc tcactgatat ctgtattgtg aaatccacag 9061 aactgtacag gtgctgaatg ctgtaaggag ttctggttgt atgaattcta caaccctata 9121 ataaagttta ccgtattcaa tcatgtttta ttttcatcac ttgacagatc cttaatgtgg 9181 aaattattga tttacgtttt gttaacatta atcagttata aaattatgaa cataaatcca 9241 cttccattcc catctctaca tactcatgtt tcatgatctc atatttccga ttttcacttt 9301 gtagtaatta tgttataaat atcttacaat gttcttgcca tacaaattca actacttact 9361 gggattcttc agctcagagc aattgaaaat cttactgttt ttcccacttt ataactacat 9421 aaacaatga //