LOCUS AF012906 8000 bp DNA linear BCT 24-JUL-2016 DEFINITION Bacillus subtilis yojP gene, partial cds; yojQ/S, yojR, yojT, yojU, yojV, yojW, yojX, yojY, yojZ, and yokA genes, complete cds. ACCESSION AF012906 U80600 VERSION AF012906.1 KEYWORDS . SOURCE Bacillus subtilis subsp. subtilis str. 168 ORGANISM Bacillus subtilis subsp. subtilis str. 168 Bacteria; Bacillota; Bacilli; Bacillales; Bacillaceae; Bacillus. REFERENCE 1 (bases 1 to 8000) AUTHORS Ghim,S.Y., Choi,S.K., Shin,B.S. and Park,S.H. TITLE An 8 kb nucleotide sequence at the 3' flanking region of the sspC gene (184 degrees) on the Bacillus subtilis 168 chromosome containing an intein and an intron JOURNAL DNA Res. 5 (2), 121-126 (1998) PUBMED 9679200 REFERENCE 2 (bases 1 to 8000) AUTHORS Park,S.-H., Choi,S.-K., Shin,B.-S. and Ghim,S.-Y. TITLE Direct Submission JOURNAL Submitted (08-JUL-1997) Applied Microbiology Research Division, KRIBB, KIST, P.O. Box 115, Yusong-Gu, Taejon 305-600, Korea REFERENCE 3 (bases 1 to 8000) AUTHORS Park,S.-H., Choi,S.-K., Shin,B.-S. and Ghim,S.-Y. TITLE Direct Submission JOURNAL Submitted (23-DEC-1997) Applied Microbiology Research Division, KRIBB, KIST, P.O. Box 115, Yusong-Gu, Taejon 305-600, Korea REMARK Amino acid sequence updated by submitter COMMENT On Oct 28, 1997 this sequence version replaced gi:2522308. FEATURES Location/Qualifiers source 1..8000 /organism="Bacillus subtilis subsp. subtilis str. 168" /mol_type="genomic DNA" /strain="168" /sub_species="subtilis" /type_material="type strain of Bacillus subtilis" /db_xref="taxon:224308" /map="182 degrees" gene <1..1986 /gene="yojP" CDS <1..1986 /gene="yojP" /inference="non-experimental evidence, no additional details recorded" /note="YojP; similar to B. subtilis ribonucleotide reductase NrdE encoded by GenBank Accession Number Z68500" /codon_start=1 /transl_table=11 /product="ribonucleotide reductase homolog" /protein_id="AAB92484.1" /translation="GTTIVDAIPMQLTKKDAEIFKVKTKQGYEIRATEWHKFYVKRDG EIQKLQLNQLKTGDKLLVQSAEGAYGKIHEPDLAYIMGIIAGDGTITEKTAKIYLYDN KKVLEQKVTDAVHRIIQKHKVDRAYKHNTSLLPTFNMANPEKQDLLYMNSTVLFDILK KFGMNKETKTRVPEFIFQANKETQAAYLSGLFQTDGCVNANHKAKALTIELTSIHYES LQDVQKLLLNMGVYTTIYSNNKRSQELLPDGKGGSKLYNVKPTHKISIQDRNSRELFM SIVEMKEYDVYKFNLLTETLQPKSRKPKHDFTAEIISIEEDGVEDVYDTTQEDYHSLI FNGIVTGNCSEVLQSSQVSVYTDYDKEDEIGLDISCNLGSMNIVNVMSNQSIASTVRI AIDSLTTVTRKTNIVNAPAVARANTLMRSIGLGQMNLHGFLAQNNIAYESEEAKDFAN TYFMMVNFYSLQRSMEIARETGETYYKFDGSTYKSGEYFEKYVTNDYSPQYEKVKKLF GDQHIPNIQDWMKLKEDVMKYGLYHSYRQAIAPTGSISYVQSSTAGVMPIMERIEERT YGNSKTYYPMPGLSAQNWFFYKEAYDMDMFKVVDLIATIQQHVDQGISFTLFLKDTMT TRDLNRIDLYAHHRGIKTLYYARTKDTTQEGCLSCVV" gene 2316..4113 /gene="yojQ/S" CDS join(2316..2900,3709..4113) /gene="yojQ/S" /inference="non-experimental evidence, no additional details recorded" /note="yojQ/S gene is distrupted by the yojR gene containing a putative intron resembling the eukaryotic group I introns; product of yojQ gene shows similarity to the N-terminal region of NrdF of B. subtilis; yojS gene is similar to the C-terminal region of NrdF; yojS does not have its own ribosome binding site; yojS gene is not an independent gene and the product is just a part of the yojQ product." /codon_start=1 /transl_table=11 /product="YojQ/S" /protein_id="AAB92486.1" /translation="MTKIYDAANWSKHEDDFTQMFYNQNVKQFWLPEEIALNGDLLTW KYLGKNEQDTYMKVLAGLTLLDTEQGNTGMPIVAEHVDGHQRKAVLNFMAMMENAVHA KSYSNIFLTLAPTEQINEVFEWVKNNRFLQKKARTIVSVYKTIKKNDEISLFKGMVAS VFLESFLFYSGFYYPLYFYGQGKLMQSGEIINLIIRDEAIHGVYVGLLAQEIYKKQTP QKQKELYAWALNLLQELYENELEYTEDVYDQVGLAPDVKKFIRYNANKALNNLGFDHW FEEEDVNPIVINGLNTKTKSHDFFSTKGNGYKKATVEPLKDSDFIFTEKGCIQ" gene 3008..3529 /gene="yojR" CDS 3008..3529 /gene="yojR" /inference="non-experimental evidence, no additional details recorded" /note="similar to endodeoxyribonucleases; this region includes a putative intron resembling the eukaryotic group I introns" /codon_start=1 /transl_table=11 /product="unknown" /protein_id="AAB92485.1" /translation="MIRKEVEEAPWWITETGVIISKKLKKPRKTFITPHGYEMIGYTH PKKGTQNYLVHRLVAKYFIYDIPKGMFVNHIDGNKLNNHVRNLEIVTPKENTLHAMKI GLMSGQPGESNSMSKLTNMEATNLIYDLIAGMNNVEAGEKYSLHPRYVSLIRHKRRWK TLWDRIERSTTIA" gene 4110..4352 /gene="yojT" CDS 4110..4352 /gene="yojT" /inference="non-experimental evidence, no additional details recorded" /note="YojT; similar to glutaredoxin-like protein of Lactococcus lactis" /codon_start=1 /transl_table=11 /product="glutaredoxin-like protein homolog" /protein_id="AAB92487.1" /translation="MRLIKLEQPNCNPCKMVSNYLEQVNIQFETVDVTQEPEVAARFG VMGVPVTILLSDQGEEVNRSVGFKPNELDELLKELR" gene 4398..4826 /gene="yojU" CDS 4398..4826 /gene="yojU" /inference="non-experimental evidence, no additional details recorded" /note="YojU; similar to dUTPase of the temperate lactococcal bacteriophage rlt" /codon_start=1 /transl_table=11 /product="dUTPase homolog" /protein_id="AAB92488.1" /translation="MQIKIKYLDETQTRINKMEQGDWIDLRAAEDVAIKKDEFKLVPL GVAMELPEGYEAHVVPRSSTYKNFGVIQTNSMGVIDESYKGDNDFWFFPAYALRDTKI KKGDRICQFRIMKKMPAVDLIEVDRLGNGDRGGHGSTGTK" gene 4921..5370 /gene="yojV" CDS 4921..5370 /gene="yojV" /inference="non-experimental evidence, no additional details recorded" /codon_start=1 /transl_table=11 /product="unknown" /protein_id="AAB92489.1" /translation="MKITIEELPELRIAYFRNVGEYGGKQNKELMESFKKWAQLNGVF HNSVILGIPQDDPSITPKEECRYDVGVVLNEDFNVLQPAQVGKLPGGKYAVFLLDHTK EAVSEFWGNIFSEIEKNSLTMRGEPIIERYTSQMIDNHLCEVLVPIQ" gene 5807..5974 /gene="yojW" CDS 5807..5974 /gene="yojW" /inference="non-experimental evidence, no additional details recorded" /codon_start=1 /transl_table=11 /product="unknown" /protein_id="AAB92490.1" /translation="MLYRNGLCFGFLQLQGLEDEFIEHMRQVAEYEKDLRYKKAAANF MKMHDQNWVGD" gene 5975..6265 /gene="yojX" CDS 5975..6265 /gene="yojX" /inference="non-experimental evidence, no additional details recorded" /codon_start=1 /transl_table=11 /product="unknown" /protein_id="AAB92491.1" /translation="MFKDKNKIIKSVEKINKLEEGLSLFEEGDEEYLSVLVKIQGLYD EISDTALECFKEMTTKIRKTGQKRIIKGIDQLPHTIKENIADQVNDFKGGAI" gene 6418..6753 /gene="yojY" CDS 6418..6753 /gene="yojY" /inference="non-experimental evidence, no additional details recorded" /codon_start=1 /transl_table=11 /product="unknown" /protein_id="AAB92492.1" /translation="MRGESNTYIKVKSVLDNSTPEDAKRNKNLIYLFTLLKGSSLIIP LAYNGLIMHENILILCWTAFSVIYTVLSMFKVLDVLEGETVSHSRYIYLAYVFGNLIF ALSIIFHIM" gene 6984..7337 /gene="yojZ" CDS 6984..7337 /gene="yojZ" /inference="non-experimental evidence, no additional details recorded" /note="similar to tropomyosin 1 of Drosophila melanogaster" /codon_start=1 /transl_table=11 /product="unknown" /protein_id="AAB92493.1" /translation="MEVGDKIHNTNEQITALEKKKYQIETTLLEKQRDLLKLETQQNK AKLELLFELSEVLTQLEGEEWVSATIALRIIKRNKRKYLDLFDLNDDKAYVNKDKFKF LHDEFFELKQQLNDI" gene complement(7637..7855) /gene="yokA" CDS complement(7637..7855) /gene="yokA" /inference="non-experimental evidence, no additional details recorded" /note="small, acid-soluble spore protein (SspC)" /codon_start=1 /transl_table=11 /product="unknown" /protein_id="AAB92494.1" /translation="MAQQSRSRSNNNNDLLIPQAASAIEQMKLEIASEFGVQLGAETT SRANGSVGGEITKRLVRLAQQNMGGQFH" BASE COUNT 2914 a 1203 c 1595 g 2288 t ORIGIN 1 ggtaccacaa ttgtagatgc aattccaatg caactgacta aaaaagatgc ggaaatattt 61 aaagtcaaaa cgaagcaagg atatgaaatt agggcaactg agtggcacaa attctatgtg 121 aaaagagatg gtgaaattca aaagctccaa ttgaatcaac tgaaaacagg cgataaatta 181 ttagtccaat cagctgaagg agcatacggg aaaattcatg aacccgatct tgcatacatt 241 atgggcatta tagctggtga tggaaccatt actgaaaaaa ctgccaagat ttatttatac 301 gataataaaa aagttcttga gcagaaagtt actgatgcag ttcaccgtat tattcaaaaa 361 cacaaggttg atcgtgctta taagcacaat acatcacttc tcccaacatt taatatggcc 421 aacccagaaa aacaagattt gctctacatg aatagtactg tcttatttga catcttgaag 481 aagttcggta tgaacaaaga aacaaaaaca agagtcccag aattcatttt tcaagctaat 541 aaggaaacgc aagcagctta tttatcgggt ttattccaga ctgatgggtg tgtaaatgca 601 aatcataaag ccaaagcatt aactattgag ttaacatcca tccactatga gagccttcag 661 gacgttcaga agctgttact gaacatgggt gtttatacaa cgatttattc taacaacaag 721 cgctcacaag aactccttcc tgatggaaaa ggtggttcta agctttacaa tgtaaaacca 781 acacacaaaa tcagtattca agatagaaac tcaagagagt tgtttatgag tattgttgaa 841 atgaaagaat acgatgttta taaattcaat ttgttaactg agacattgca acctaagtca 901 agaaagccaa agcatgattt tacagctgaa attattagta ttgaagaaga tggtgttgag 961 gatgtttatg atacaacaca agaagactat cactctctga ttttcaatgg aattgttact 1021 ggtaactgtt cagaggtact tcaatcgtca caagtatcag tttatacgga ttacgataaa 1081 gaggatgaaa ttggcttaga tatctcatgt aatcttggct caatgaacat tgtaaatgta 1141 atgagtaatc aatcaattgc ttcaacagtc agaatagcaa ttgactcact gacaactgtc 1201 acaaggaaaa caaacattgt aaatgctcca gcagttgcga gagcaaatac attaatgaga 1261 tcaattggtc tagggcagat gaacctccat ggatttctag ctcaaaataa tattgcttat 1321 gaaagtgaag aagctaagga ttttgcaaat acatacttta tgatggttaa cttctactca 1381 ctgcagcgtt ctatggaaat tgcacgagaa acaggggaga catactacaa gtttgatggt 1441 tcgacttata aatcaggcga gtatttcgaa aagtacgtaa caaatgatta tagccctcag 1501 tatgaaaagg ttaaaaagct atttggagat caacatattc ctaatattca agattggatg 1561 aagcttaaag aagatgtaat gaaatatggt ctttatcatt cctatagaca agctattgcg 1621 cctacgggaa gcatctcata tgttcaatca tctacagcag gtgtaatgcc aattatggag 1681 agaattgagg aacgtacata cggaaacagt aagacatatt atccgatgcc aggtttatcg 1741 gctcagaatt ggttcttcta taaggaagca tacgacatgg atatgtttaa ggtagttgat 1801 cttattgcaa caattcagca gcacgtcgac caagggattt catttacgtt gttcttaaag 1861 gatacgatga cgacgagaga cctaaataga atagacctct acgcacatca tcgtggaatt 1921 aaaactttat attatgccag aactaaagat acgacccaag agggatgctt gtcctgtgta 1981 gtttaatagg tacgtttacg ttttggttca aaattaacag gatctcccgg acgtcgtttg 2041 cacttaattt tgttaaattt tctcataaga gcattacaaa gtaaaccaaa tataagcttc 2101 aaaatatatt cgattaaaca tgataaaagc ctatcacaca accatccagt tgaaatgact 2161 gtactctcta acaaagatat aaggttatct aaaaaattca ctgtctttca ttcctttcga 2221 atgtttgaca gtaatatagg agtctgtcaa ttcagctttt aaattcactg catttttttc 2281 ggaaaaaaat atttcaattg aaaggacatg attaattgac aaaaatttat gacgcagcaa 2341 actggtcaaa gcatgaagac gattttaccc aaatgttcta taaccaaaac gtgaaacagt 2401 tctggcttcc ggaagagatt gctttaaacg gcgatctcct cacatggaag tacctcggaa 2461 aaaatgagca ggacacttat atgaaggtac tggccggact tacgcttctt gatacagagc 2521 aggggaatac ggggatgccg atcgtggctg aacacgtaga tggacatcaa agaaaggcag 2581 ttttaaattt catggccatg atggaaaatg ctgttcatgc aaagtcttac agcaacatct 2641 ttctaacatt ggctccaacc gagcagatca atgaagtctt tgaatgggtg aaaaacaata 2701 ggtttcttca aaagaaagct agaacaattg tttcagtcta taaaacaatc aagaaaaacg 2761 atgaaatttc tttatttaaa ggaatggttg catctgtgtt cctggagagt tttcttttct 2821 actcagggtt ttattaccca ctttattttt atggacaagg aaagttaatg caaagtggag 2881 agatcattaa cctgattatt taatagtccc ttttgtcggc aacggcaaat gtgaacctct 2941 ctaattgctg gaaaatcctt attaggacaa tcagcagcga agctatgcga acccaaagga 3001 ggtgaaaatg ataaggaaag aagtcgaaga agcaccttgg tggataacgg aaacgggagt 3061 tatcatatca aaaaaattaa agaaaccaag aaagacattt attactccac atggctatga 3121 aatgatagga tacacgcatc cgaaaaaagg aacacagaac tatttagtac ataggttagt 3181 cgcaaaatat tttatttatg atataccaaa aggaatgttt gtaaaccaca tagatggaaa 3241 taaactaaac aaccacgttc ggaacttaga aatagttaca cctaaagaaa atactctaca 3301 tgcaatgaaa attggattaa tgtcaggaca acctggagaa agtaattcaa tgtcaaagct 3361 cactaatatg gaggcaacaa atttaatcta tgatttgatt gctggaatga acaatgttga 3421 agctggtgaa aaatacagcc ttcatcctcg ttacgttagt ctaattcgac ataaaagaag 3481 atggaagact ttatgggatc gcatagaacg ttcaacgact atcgcatagg cggcgaaatt 3541 ccgcaaaacg agtagggcgc aagctattgg cgtgggtgag aaccccttaa atcgaaacgg 3601 gaggcatcct acagggatga tgatatagtc tgctccttac ggtaacgtaa ggcggttgcg 3661 acagagcaac gaaccgaaag tagcgaactc ggttgaacta agggtattag agacgaagcg 3721 atacatggcg tatatgtagg attgttagct caagagattt ataagaagca aacgccacag 3781 aagcaaaaag aactgtacgc atgggcttta aacttactgc aggaacttta cgaaaatgaa 3841 ttggagtata cagaagatgt ctatgatcag gttggattag ctccagatgt aaagaaattc 3901 atcagataca acgcaaataa agctttaaac aatctgggct ttgatcattg gtttgaagaa 3961 gaggatgtta atccaattgt tatcaatggt ttgaacacta agactaaatc ccatgacttc 4021 ttttcaacta aagggaatgg atacaaaaaa gcaacagtgg agcctttaaa ggattcagat 4081 ttcattttta ccgagaaagg atgtattcaa tgagattaat taaattagag cagcctaatt 4141 gcaatccatg taaaatggtg tccaattact tagaacaagt aaatattcaa tttgagactg 4201 ttgacgttac acaggaacca gaagtagcag caagatttgg tgtcatggga gtaccggtaa 4261 ccattctgct gagtgatcag ggagaagaag taaaccgaag tgttggtttt aagcctaatg 4321 aacttgatga gttactaaag gaattacgat aaaagggtaa ttttaaacaa acttgaatta 4381 aaaggagcta atacataatg caaattaaaa tcaaatactt agatgaaaca caaacaagaa 4441 ttaacaaaat ggagcaaggt gattggattg atcttcgtgc agctgaagat gtagcgatca 4501 aaaaagatga atttaaactt gttccattgg gagtggccat ggaattgcct gaaggttacg 4561 aagcacatgt cgttcctcgt tcgagtacgt ataagaactt tggtgtgatt caaacaaact 4621 caatgggtgt tatcgatgag tcttataagg gtgacaacga tttttggttc tttcctgctt 4681 atgcgttacg tgacacaaag attaagaaag gggatcgaat ctgccagttc agaattatga 4741 agaagatgcc ggcagttgac ttgatcgagg tagaccgtct aggcaacggt gaccgaggtg 4801 ggcacggatc aactggaacg aagtaattgg attttgtatt tgaaatatag attattttaa 4861 aagtcatctt gaaaaacatt tttaatcata ttaccttttt ctaggaaagg ggattaaaat 4921 atgaaaataa ctattgaaga attacctgaa ttaaggattg cttatttccg aaacgttgga 4981 gagtatggtg gtaagcaaaa caaagaacta atggaatctt ttaaaaagtg ggcacagttg 5041 aatggtgtat ttcataactc tgtaatttta ggaattccac aagatgatcc aagtattact 5101 cctaaagagg aatgccgtta tgatgttggt gttgtattaa atgaagattt taatgtgctg 5161 caaccagctc aagttggtaa gttacctgga gggaaatacg ctgttttctt gcttgaccat 5221 acaaaagagg cagtaagtga attttggggc aatattttct ctgaaataga aaaaaatagt 5281 ctaactatga gaggagaacc aattatagag agatatactt cacaaatgat tgataatcac 5341 ttatgtgaag tattagttcc tatccaataa agaaggtggg taatttccca cctcctatat 5401 atgtataagt taaatgctct gaattaactc gtttatttta tcaagattaa tggtaatgtt 5461 gcatattgca attacgaagt atagagtacc ttggtatcgt tcttttttaa caaaacagtt 5521 aattccaaaa ccaatcaaaa atgcaattat gattagctga acgaacacaa ataattgtga 5581 attaggactg aagaaagaat aaaccaataa taacaataga atcagtaagc taacgatttt 5641 taatattttt cgcaaattaa cactccttta aatacattgt ttttaattta ccataaaaga 5701 tttttgttgg aaatatttcc gaataaaaga atacttttat ctaatattta aggaggaaga 5761 gattattaac agcaaagaaa gagatttaca agcgaaatat gacgacatgc tttataggaa 5821 cggtctttgc tttgggtttc ttcagttaca aggacttgaa gatgaattta ttgaacatat 5881 gagacaagtt gctgagtacg agaaagacct gagatacaag aaggcagcag ctaacttcat 5941 gaagatgcat gaccaaaact gggtggggga ttaattgttt aaggataaaa ataaaataat 6001 aaagagtgtt gaaaagatca acaaacttga agaagggttg tcgctatttg aagaaggtga 6061 cgaagaatat ttaagtgtat tagtgaaaat tcaggggcta tatgatgaaa tctcagatac 6121 tgctttagag tgttttaaag agatgactac aaaaattagg aaaactggtc agaaacggat 6181 tataaaaggg attgatcagt tgccacatac aattaaagaa aacattgctg atcaagtgaa 6241 tgattttaaa gggggagcta tttgaataaa agcaaatatt aacggtatag agtttgaggg 6301 tgagtaaaag ccaacccaac acaaatataa aattaggaga tgtttactat aacatatgta 6361 actttatttc tatcagctta tctaattgta ttaaacatta atgaggtcag gttgattatg 6421 cgaggggaaa gcaatacgta tataaaagta aagagtgtgc ttgataattc aactccagaa 6481 gatgcgaaac gaaataagaa tttaatttac ctgtttactt tgcttaaggg gagttcttta 6541 atcatcccct tggcatataa cggtttaatt atgcatgaaa atatccttat actctgttgg 6601 acagcatttt cagttatata cacagtccta agcatgttta aggttttaga cgtgttggag 6661 ggcgaaacag tgagccatag taggtatatt tatttggctt atgtctttgg gaaccttatc 6721 tttgctttga gtattatttt tcatataatg tgaaattgtg tttagctgca ctcattatac 6781 ggctcaagcc cttttagcat ttgtcagggc taagtaaatg gatttaagaa tgaaaataaa 6841 ataactatag acaaatacaa ataatatgta taatataata atagaagatg atgaaatgac 6901 agttttttta tctaatatac aaaaacaaaa aatatacatt ttttaaaact aatattttat 6961 tcaaacttta aggaggtgat tcattggaag taggagacaa aatacataac accaacgaac 7021 agataacagc cttagagaaa aagaaatacc aaattgaaac aactttactt gaaaaacaaa 7081 gggatctgtt aaaactcgaa acacagcaaa acaaagctaa gcttgaattg ttattcgagc 7141 taagtgaagt cttaacccaa ttggaaggtg aagagtgggt aagtgccact attgctttac 7201 gaattattaa aagaaataaa agaaagtact tagatctctt tgatcttaat gatgacaaag 7261 catacgtaaa taaggataaa tttaaatttc ttcatgatga attctttgag ctgaaacaac 7321 aattaaatga tatctgagga gttgtcagtt gacggtagcg aaattggagg tgacaaatat 7381 atgtgtacat gtgaagaggg tagtggcaaa tgttcttatt gtgacggagc gctggatata 7441 ttctaaatga agagaacgca atttatagag tggctaatca aaggaggcaa taaaatggta 7501 cagacattac acagtgcaag tcgaggagct taataatagt agttagtgac ataaaaagag 7561 gtggaaacaa taccattagc tctgtatgga tttagagaag acttaaaaaa gagaggggaa 7621 ttatccccct cataaattaa tgaaattgac cgcccatgtt ttgttgagct aagcgaacta 7681 aacgtttagt gatttctcca ccaactgaac cgtttgcacg agatgtagtc tcagcgccta 7741 attgaacacc aaactcagaa gctatttcaa gtttcatttg ttcaatagct gaagctgctt 7801 gaggaattag taaatcatta ttgttgtttg atcttgatct actttgttga gccatcttat 7861 tcatctccta aagtgtaatg aaaacaagct tgtttgaatc atattatgga gagattattt 7921 taatttatac acgccaaaga aataaatttt tcattaagaa aggtggagac aaaatgaaaa 7981 ttgattatgt ttcagatctc //