LOCUS ADFV01190525 2370 bp DNA linear PRI 31-AUG-2010 DEFINITION Nomascus leucogenys contig_42629, whole genome shotgun sequence. ACCESSION ADFV01190525 ADFV01000000 VERSION ADFV01190525.1 DBLINK BioProject: PRJNA13975 BioSample: SAMN02981257 KEYWORDS WGS. SOURCE Nomascus leucogenys (northern white-cheeked gibbon) ORGANISM Nomascus leucogenys Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hylobatidae; Nomascus. REFERENCE 1 (bases 1 to 2370) AUTHORS Carbone,L., Harris,R.A., Gnerre,S., Veeramah,K.R., Lorente-Galdos,B., Huddleston,J., Meyer,T.J., Herrero,J., Roos,C., Aken,B., Anaclerio,F., Archidiacono,N., Baker,C., Barrell,D., Batzer,M.A., Beal,K., Blancher,A., Bohrson,C.L., Brameier,M., Campbell,M.S., Capozzi,O., Casola,C., Chiatante,G., Cree,A., Damert,A., de Jong,P.J., Dumas,L., Fernandez-Callejo,M., Flicek,P., Fuchs,N.V., Gut,I., Gut,M., Hahn,M.W., Hernandez-Rodriguez,J., Hillier,L.W., Hubley,R., Ianc,B., Izsvak,Z., Jablonski,N.G., Johnstone,L.M., Karimpour-Fard,A., Konkel,M.K., Kostka,D., Lazar,N.H., Lee,S.L., Lewis,L.R., Liu,Y., Locke,D.P., Mallick,S., Mendez,F.L., Muffato,M., Nazareth,L.V., Nevonen,K.A., O'Bleness,M., Ochis,C., Odom,D.T., Pollard,K.S., Quilez,J., Reich,D., Rocchi,M., Schumann,G.G., Searle,S., Sikela,J.M., Skollar,G., Smit,A., Sonmez,K., ten Hallers,B., Terhune,E., Thomas,G.W., Ullmer,B., Ventura,M., Walker,J.A., Wall,J.D., Walter,L., Ward,M.C., Wheelan,S.J., Whelan,C.W., White,S., Wilhelm,L.J., Woerner,A.E., Yandell,M., Zhu,B., Hammer,M.F., Marques-Bonet,T., Eichler,E.E., Fulton,L., Fronick,C., Muzny,D.M., Warren,W.C., Worley,K.C., Rogers,J., Wilson,R.K. and Gibbs,R.A. TITLE Gibbon genome and the fast karyotype evolution of small apes JOURNAL Nature 513 (7517), 195-201 (2014) PUBMED 25209798 REFERENCE 2 (bases 1 to 2370) CONSRTM Gibbon Genome Sequencing Consortium TITLE Direct Submission JOURNAL Submitted (29-JAN-2010) Human Genome Sequencing Center, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA REFERENCE 3 (bases 1 to 2370) CONSRTM Gibbon Genome Sequencing Consortium TITLE Direct Submission JOURNAL Submitted (09-OCT-2012) Human Genome Sequencing Center, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA COMMENT The members of the Gibbon Genome Sequencing Consortium are the Baylor College of Medicine Human Genome Sequencing Center and the Genome Sequencing Center at Washington University. DNA for both the BAC library and the WGS sequence was isolated from blood provided by Alan Mootnick (Director, Gibbon Conservation Center, Santa Clarita, California) from a female named Asia (international studbook #0098), The CHORI-271 BAC Library was constructed by Boudewijn ten Hallers and Baoli zhu in Pieter deJong's laboratory (BACPAC Resources, Children's Hospital Oakland Research Institute). DNA was sequenced using Sanger methods by the Baylor College of Medicine Human Genome Sequencing Center, and the Genome Center at Washington University. The genomic sequence was assembled by Sante Gnerre and David Reich (Broad Institute of Harvard and MIT) using the methods described (Genome Biology 2009; 10(8):R88). The mitochondrion was assembled by Yue Liu (BCM-HGSC) using Phrap (http://www.phrap.org); reads with similarity to mitochondrial sequences were assembled using Phrap with default parameters. Funding for the sequencing of the white-cheeked gibbon genome was provided by the National Human Genome Research Institute, National Institutes of Health (NHGRI). ##Genome-Assembly-Data-START## Assembly Method :: Arachne Assembler, assisted with Human NCBI build 36 (UCSC hg18); Phrap for mitochondrial sequences Assembly Name :: Nleu_3.0 Genome Coverage :: 5.6x in Q20 bases Sequencing Technology :: Sanger ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..2370 /organism="Nomascus leucogenys" /mol_type="genomic DNA" /isolate="Asia; international studbook 0098" /db_xref="taxon:61853" /sex="female" /tissue_type="blood" BASE COUNT 705 a 523 c 541 g 601 t ORIGIN 1 tttttttgta tttagtagag atggggtttc accacttggc caggtaaaaa tacccggaag 61 agtgggcggg cgccttagtc ccagctactt ggagaggctg aggcaggaga atggcgtgaa 121 cccgggaggc ggagtttgca gtgagcggag attgcgccac tgcactccag cctgggcgac 181 agagcgagac tccgtctcaa caaaaaaaaa aaaaaaaaaa aaaaaaaaaa tgccctacca 241 ggacacaaca tagtgacaat aacacattca atttagagat aatggttgag agggaaccag 301 ctaagaactt acaataatag cactaagagc acagaggaaa aaaaaaataa caataacata 361 atggaatgca gcaggcgctg ttaagaacca ctcatatccc ctccccattt tcagcacaat 421 ttccaatttc caattgcacc agtatttctt tcagggcttt ctctggcctg aagagtccat 481 tttgcctact gtcacaggac ttgaaaatga tcactcccca cttcccagca agcctcaagc 541 aggcgtaagt gactggcata taaatatccc acgccctcaa ccctcagtga ggataattct 601 gcagcatgtg tcctatactg gctcccaggg ttcccctgcg gcctctaact ccattcccac 661 agtagtaacc tgcctgataa tgagccattt gtggcttgcc tttccttatt atctcacttc 721 cccactcccc tctgagtgct tcctgggatc atttcccaaa ggaagtactt tcactggatc 781 cttgactcag catctgttct ggggaatgca aagcaagaca ctgactgcag acgtatatat 841 gcctacttag ttttagtaaa atatttcaag ggccaggggc aggggctcat tcctgtaatc 901 tcagcacttt gggaggctga gacaggagaa tcgtttgaac ccgggaggtg gaagttgcag 961 cgagccgaga ttgagccact gcactccagc ctgcgcaaca agagcgaaac tttgcctcaa 1021 aaaaaaaaaa tttttttttc aaagacagat agttacaaca aagcagcact gcatggtgtt 1081 acgttcagtg ggatgtgtaa caggtacaca aaaaatcggc tttttctaaa aaatagctgt 1141 tatagcatta aacaacaaaa cttaatactt atattcataa gtctctatat taaaataata 1201 tttgttgccc gggaatggtg gctcatgcct gtaatcccag cactttggga ggctgaggtg 1261 ggcagatcac ctgaggtcag aagttcgaga ccagtctggt ctacatggca aaaccccatt 1321 tcaactaaaa atacaaaaat aagccgatgt ggtgatgtat gcctgtagtc ccagctactc 1381 gggaggctga ggcaggagaa tcgcttgaac ccaggaggcg gaggctgcag ggagccaaga 1441 tcacacaact gcactccagc ctgggaaaca gggcaagact ccatttcaaa aaaaaaaaag 1501 aatattattt gttctctgaa atcattttaa actaagagtt ccagccgggt gcagtgctca 1561 cgcttgtaac cctagcactt tgggaagcct gggcaggagg acagcttgag cccaggagtt 1621 ctagaccagc ctgggcaaca gagtgagacc tcatctctac taaaagtttt gtgtgtgtgt 1681 gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgttttgga gatggggttt cgcacttgtt 1741 gcccaggctg gagtgcaatg gtgtgatctc agctcactgc aacatctacc tcctgggttc 1801 aagcgattct cctgcctcag cctcccaagg agcggggatt acaggaaaca tgccaccatg 1861 cccagctaat ttttgtattt tttagtaaag atggggtttc tccctattgg tcaactggtc 1921 tcgaactctc gaccctcaat gatctgccca tctcagcctc tcaaagtact ggaataacag 1981 gccgtaagcc accgtgcctg gcctaataaa atttttttta aaaattagct gggcatggtg 2041 gcatgcacct gtagtttcag ctactcagaa gggtgaggtg ggaggatcac gagcacagga 2101 aatggaggct gctatgattg tgtcactgca ttccagcctg gccaacagag caagactgtg 2161 tttcaaaaga attaaaaaaa aaaaaaaaaa atttaaataa gaattcctaa tccagagttt 2221 tgatttaaaa aaaaaaaaaa aagatctgag tttattggga atttaatggt tagctttcag 2281 aatatcccac atatctttat tttggaaatt cccaaaactc tcacattaag aaaaaattct 2341 attagcactg tggcaggaaa tggttgtctt //