LOCUS ADFV01186603 1380 bp DNA linear PRI 31-AUG-2010 DEFINITION Nomascus leucogenys contig_38707, whole genome shotgun sequence. ACCESSION ADFV01186603 ADFV01000000 VERSION ADFV01186603.1 DBLINK BioProject: PRJNA13975 BioSample: SAMN02981257 KEYWORDS WGS. SOURCE Nomascus leucogenys (northern white-cheeked gibbon) ORGANISM Nomascus leucogenys Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hylobatidae; Nomascus. REFERENCE 1 (bases 1 to 1380) AUTHORS Carbone,L., Harris,R.A., Gnerre,S., Veeramah,K.R., Lorente-Galdos,B., Huddleston,J., Meyer,T.J., Herrero,J., Roos,C., Aken,B., Anaclerio,F., Archidiacono,N., Baker,C., Barrell,D., Batzer,M.A., Beal,K., Blancher,A., Bohrson,C.L., Brameier,M., Campbell,M.S., Capozzi,O., Casola,C., Chiatante,G., Cree,A., Damert,A., de Jong,P.J., Dumas,L., Fernandez-Callejo,M., Flicek,P., Fuchs,N.V., Gut,I., Gut,M., Hahn,M.W., Hernandez-Rodriguez,J., Hillier,L.W., Hubley,R., Ianc,B., Izsvak,Z., Jablonski,N.G., Johnstone,L.M., Karimpour-Fard,A., Konkel,M.K., Kostka,D., Lazar,N.H., Lee,S.L., Lewis,L.R., Liu,Y., Locke,D.P., Mallick,S., Mendez,F.L., Muffato,M., Nazareth,L.V., Nevonen,K.A., O'Bleness,M., Ochis,C., Odom,D.T., Pollard,K.S., Quilez,J., Reich,D., Rocchi,M., Schumann,G.G., Searle,S., Sikela,J.M., Skollar,G., Smit,A., Sonmez,K., ten Hallers,B., Terhune,E., Thomas,G.W., Ullmer,B., Ventura,M., Walker,J.A., Wall,J.D., Walter,L., Ward,M.C., Wheelan,S.J., Whelan,C.W., White,S., Wilhelm,L.J., Woerner,A.E., Yandell,M., Zhu,B., Hammer,M.F., Marques-Bonet,T., Eichler,E.E., Fulton,L., Fronick,C., Muzny,D.M., Warren,W.C., Worley,K.C., Rogers,J., Wilson,R.K. and Gibbs,R.A. TITLE Gibbon genome and the fast karyotype evolution of small apes JOURNAL Nature 513 (7517), 195-201 (2014) PUBMED 25209798 REFERENCE 2 (bases 1 to 1380) CONSRTM Gibbon Genome Sequencing Consortium TITLE Direct Submission JOURNAL Submitted (29-JAN-2010) Human Genome Sequencing Center, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA REFERENCE 3 (bases 1 to 1380) CONSRTM Gibbon Genome Sequencing Consortium TITLE Direct Submission JOURNAL Submitted (09-OCT-2012) Human Genome Sequencing Center, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA COMMENT The members of the Gibbon Genome Sequencing Consortium are the Baylor College of Medicine Human Genome Sequencing Center and the Genome Sequencing Center at Washington University. DNA for both the BAC library and the WGS sequence was isolated from blood provided by Alan Mootnick (Director, Gibbon Conservation Center, Santa Clarita, California) from a female named Asia (international studbook #0098), The CHORI-271 BAC Library was constructed by Boudewijn ten Hallers and Baoli zhu in Pieter deJong's laboratory (BACPAC Resources, Children's Hospital Oakland Research Institute). DNA was sequenced using Sanger methods by the Baylor College of Medicine Human Genome Sequencing Center, and the Genome Center at Washington University. The genomic sequence was assembled by Sante Gnerre and David Reich (Broad Institute of Harvard and MIT) using the methods described (Genome Biology 2009; 10(8):R88). The mitochondrion was assembled by Yue Liu (BCM-HGSC) using Phrap (http://www.phrap.org); reads with similarity to mitochondrial sequences were assembled using Phrap with default parameters. Funding for the sequencing of the white-cheeked gibbon genome was provided by the National Human Genome Research Institute, National Institutes of Health (NHGRI). ##Genome-Assembly-Data-START## Assembly Method :: Arachne Assembler, assisted with Human NCBI build 36 (UCSC hg18); Phrap for mitochondrial sequences Assembly Name :: Nleu_3.0 Genome Coverage :: 5.6x in Q20 bases Sequencing Technology :: Sanger ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1380 /organism="Nomascus leucogenys" /mol_type="genomic DNA" /isolate="Asia; international studbook 0098" /db_xref="taxon:61853" /sex="female" /tissue_type="blood" BASE COUNT 517 a 228 c 261 g 374 t ORIGIN 1 ttttagacaa tactcatggg tatgggcaaa aactgaggac tgtatttgtg actaattgta 61 taataagtca tttagtttct attctgtgga aggtgtaaag cattccaaca agggtttcaa 121 tgtagatttt tttttttgca tccatgttgt tgattgctaa atgtaatagt ctgatcatga 181 tgctgaataa atgtcttttt taatgtgcaa agaaaaaaaa gaatacagtg tataatatat 241 acatatagca tgcaaaatat gtgtgaatca actgtttata ttataggtaa ggcttctggt 301 caacaatagg ctattagtag ttaagttttt ggggagtcaa aagttataca tgaatttcaa 361 ctggaggttg gcactcaaat tgttcaaagg tcagctacac gttataaaat ataaaatatt 421 atataaacag aaccaaagta agctttcacc ctgaatattt ctttaatgtc ctggagacca 481 tgatatttcc aattcaactt agaagctgtt aaaggcacca tgttaaaacc tagagcttgt 541 ccaaggtagg aagccaaact caatgtaaag gtaaaaagga aacaaacctc agagagacag 601 agagagagac caaccaagac cttgtctgta ccttagtact ggtggcatat ggaaaaaaca 661 atttcccctg agaatccgta accactaata gccctcaatt agattagcag tcagaatgta 721 tcctattgta taatctgaag aatttcaagc tcagaactta atttaaggca gtcccccgtt 781 aacggcacct ctgtaacgtt ccccagttaa cggcacctct ctaatgttcc catccattaa 841 gtggaagtgg atcatgataa agtttttcat ccttgttgtc tctgagtagg ctgaaaagga 901 agagaaagaa gtggaatggg tcttgctgtc tcagaggtgg cagaggtgga agaaaattca 961 catataagtg gacctgcgca gttcaaacct gtgttgttca agcgtcggct gtaataacat 1021 atatgtaata cataatgctg agcactggca aaagcaaatc ctctctggaa gaacatcgac 1081 atagaccaca aagagtttcc actagagaag ttccaaggaa cataaattca caatcgaaaa 1141 aaattcacaa aatatacaag agaaaaagcc acaagccatt gcgagtgaca tccaacagaa 1201 agaactggca acagagtcaa acctataaag tttccaatac tataatgcta taaacattac 1261 cagacagaaa acatagaata atcatatttg aatgttttaa taaataaaag agaagcttga 1321 aaattgaagc aagagaacaa ggaactaaga aaaagaaaga atttgaaaaa aaaaaaaatc //