LOCUS ADFV01106115 4437 bp DNA linear PRI 31-AUG-2010 DEFINITION Nomascus leucogenys contig_146123, whole genome shotgun sequence. ACCESSION ADFV01106115 ADFV01000000 VERSION ADFV01106115.1 DBLINK BioProject: PRJNA13975 BioSample: SAMN02981257 KEYWORDS WGS. SOURCE Nomascus leucogenys (northern white-cheeked gibbon) ORGANISM Nomascus leucogenys Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hylobatidae; Nomascus. REFERENCE 1 (bases 1 to 4437) AUTHORS Carbone,L., Harris,R.A., Gnerre,S., Veeramah,K.R., Lorente-Galdos,B., Huddleston,J., Meyer,T.J., Herrero,J., Roos,C., Aken,B., Anaclerio,F., Archidiacono,N., Baker,C., Barrell,D., Batzer,M.A., Beal,K., Blancher,A., Bohrson,C.L., Brameier,M., Campbell,M.S., Capozzi,O., Casola,C., Chiatante,G., Cree,A., Damert,A., de Jong,P.J., Dumas,L., Fernandez-Callejo,M., Flicek,P., Fuchs,N.V., Gut,I., Gut,M., Hahn,M.W., Hernandez-Rodriguez,J., Hillier,L.W., Hubley,R., Ianc,B., Izsvak,Z., Jablonski,N.G., Johnstone,L.M., Karimpour-Fard,A., Konkel,M.K., Kostka,D., Lazar,N.H., Lee,S.L., Lewis,L.R., Liu,Y., Locke,D.P., Mallick,S., Mendez,F.L., Muffato,M., Nazareth,L.V., Nevonen,K.A., O'Bleness,M., Ochis,C., Odom,D.T., Pollard,K.S., Quilez,J., Reich,D., Rocchi,M., Schumann,G.G., Searle,S., Sikela,J.M., Skollar,G., Smit,A., Sonmez,K., ten Hallers,B., Terhune,E., Thomas,G.W., Ullmer,B., Ventura,M., Walker,J.A., Wall,J.D., Walter,L., Ward,M.C., Wheelan,S.J., Whelan,C.W., White,S., Wilhelm,L.J., Woerner,A.E., Yandell,M., Zhu,B., Hammer,M.F., Marques-Bonet,T., Eichler,E.E., Fulton,L., Fronick,C., Muzny,D.M., Warren,W.C., Worley,K.C., Rogers,J., Wilson,R.K. and Gibbs,R.A. TITLE Gibbon genome and the fast karyotype evolution of small apes JOURNAL Nature 513 (7517), 195-201 (2014) PUBMED 25209798 REFERENCE 2 (bases 1 to 4437) CONSRTM Gibbon Genome Sequencing Consortium TITLE Direct Submission JOURNAL Submitted (29-JAN-2010) Human Genome Sequencing Center, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA REFERENCE 3 (bases 1 to 4437) CONSRTM Gibbon Genome Sequencing Consortium TITLE Direct Submission JOURNAL Submitted (09-OCT-2012) Human Genome Sequencing Center, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA COMMENT The members of the Gibbon Genome Sequencing Consortium are the Baylor College of Medicine Human Genome Sequencing Center and the Genome Sequencing Center at Washington University. DNA for both the BAC library and the WGS sequence was isolated from blood provided by Alan Mootnick (Director, Gibbon Conservation Center, Santa Clarita, California) from a female named Asia (international studbook #0098), The CHORI-271 BAC Library was constructed by Boudewijn ten Hallers and Baoli zhu in Pieter deJong's laboratory (BACPAC Resources, Children's Hospital Oakland Research Institute). DNA was sequenced using Sanger methods by the Baylor College of Medicine Human Genome Sequencing Center, and the Genome Center at Washington University. The genomic sequence was assembled by Sante Gnerre and David Reich (Broad Institute of Harvard and MIT) using the methods described (Genome Biology 2009; 10(8):R88). The mitochondrion was assembled by Yue Liu (BCM-HGSC) using Phrap (http://www.phrap.org); reads with similarity to mitochondrial sequences were assembled using Phrap with default parameters. Funding for the sequencing of the white-cheeked gibbon genome was provided by the National Human Genome Research Institute, National Institutes of Health (NHGRI). ##Genome-Assembly-Data-START## Assembly Method :: Arachne Assembler, assisted with Human NCBI build 36 (UCSC hg18); Phrap for mitochondrial sequences Assembly Name :: Nleu_3.0 Genome Coverage :: 5.6x in Q20 bases Sequencing Technology :: Sanger ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..4437 /organism="Nomascus leucogenys" /mol_type="genomic DNA" /isolate="Asia; international studbook 0098" /db_xref="taxon:61853" /sex="female" /tissue_type="blood" BASE COUNT 1198 a 893 c 941 g 1405 t ORIGIN 1 tctcaaaaaa aaaaaaaaaa aaaaaatagg gcctatgaaa aaactttttc tgttgaaagt 61 gactaaatag attttttatt tttgctaatt tcagttgatt gcttttttcc atttatgaac 121 ttctcccaca tccatacaaa atgcttaaat gtgtgaaaac tctcaaatgt ctccattatt 181 tatcagaaga aaaggcatct ttttaaccct aaagagttgc caatcaagtt tagggttaaa 241 tgtgacaata tttatgcttg ggacctaaat tacagaggga gaatcttatg gttcaaactg 301 tcatcttcta tgtcttgtct gaaggtatct agagatcagg ttctggacaa tgctgcaatt 361 caattctgtg cgcgcaaagt ctctgctgtt tcaggagatg ttcgcaaagc actagatgtt 421 tgcaggtgag ttatggctct gttgccttct tttattaaaa aaaaaaagaa atgctgttaa 481 ttgtctcatg taactcaagt gaatgtggct taagaggctc tgttctgcta cttttttacg 541 ctcagaaagg aggacttgtt tctcagtggg gagctctgga tttccaccgt gttaatgtct 601 gaaacattat cagtccatta cctacagagg gagaaacaaa tgagatgttg ctggcactcc 661 ctgtagtgat tatagattgg ttaattacat ttgtattaaa aaagactcca gtttactttt 721 ccattagctg gtctcaagca gatttattta tggacctgaa ccatctttgc ctttagactt 781 tttccccttc ctttcctttt gtgagcaccc cttcttccct ccagttggtg gtcccccaca 841 gttgtactcc agacctcttt ctcccttccc gtcctcctgc ccctcctgct ggggaaagcc 901 tctgtgccaa ctgatgaaat ttcttccttc ccagtaggga cactgggtcc attaaaatga 961 tacttgctgt gctggcctgc tggtccaacc tccccctgtt gccatacaga agacctaggt 1021 ctggcttatg gcttcctgtg ggcaaagtgc tttggagaga gcagtgggag agtaagctct 1081 tcctattgct agattgcgtg atcctgaatt tgaaagtttc ccctaatcag caaactactt 1141 gggtaaagac tgcaactatg agcaatagtc atgtaggcta gcgtggttta gcctacgcat 1201 atcctatgta tatataactg aagatatccc ttttaggttt ggtgtgtatg ggtggtgctg 1261 gctcccttta gtcagtcacc cacactacat atcctctctc ctacccatga cattttctcc 1321 tcatccaaaa tgttatcatt ggcttaatgt atgatgacct acttggcatc tattaggagg 1381 aaaccattga agtttctcaa atctgacgtc catgaattat ttcaaagcaa ttaagtcccc 1441 ttatctgaga aataacccag ttttgtttgg gggctttaaa attataaaac atcataattt 1501 taaagttaac acgtaggata tgtgtaggct aaaccatgtt agcctacatg accattgctc 1561 atagttgcag tctttgagca atggtcatta atgtgcctgc ttttgaggtg ggtggtttgg 1621 tgtgtttggt ttggctcaga ctaaattaat tttagaaatt ttttttatag gagagctatt 1681 gaaattgtag agtcagatgt caaaagccag actattctca aaccactgtc tgaatgtaag 1741 tagtttatct cctttctgtc ttcctttgta actggaagct tagcttttct gaggaaagag 1801 gtagaaagat gaaatgaaca tagttaaatc caaacttacc catttttatg tgtgtctgtg 1861 tctttagtct gtttcatcta ctttatttca atcttgcctg ccagtactat agttcatgca 1921 ttactggaaa tgagttccca gggtattgat tgcgtaaatg gctgggacag agtaagtttt 1981 ctttccaagc tctagaaatg aaacttgtag acaatgaggt tggatcagct ctctgggtgc 2041 ttatgttgtg tgcgctttag gtcttaatat aggtgaaagc aaagcctgat aaataaggga 2101 gaattgggta aaagaattgt gaagccaggt ggggtggttc acacctgtaa tcccagcact 2161 ttgggaggcc aaggtgggag gatcgcttga gcccaggatt gtgagaccag cctgggcaat 2221 atagtgagac ctcgtttcta caaagagttc atatcctttt tacggacatg gatgaagctg 2281 gaaaccatca ttctcagcaa agtaacacag gaacagaaaa tcaaacacca catgttctca 2341 ctcataagtg ggagttgaac aatgagaaca cgtggacaca gggaggggaa catcacacac 2401 tggaggctgt tgggggtggg ggccaaaggg agggggagca tgcgggactt aaaacctaga 2461 tgacaggtcg atgagtgcag caagccacca tggcacatgt atacctatgt aacaaacctg 2521 catgttctgc acatgtatcc cagaacttaa aaaaaaaaat tagacaagca tggtgtgcgc 2581 ctgtagtcct agctacttgg caggctgagg caggagaatc acttgagccg gaggagcaga 2641 ggttgcagtg agccgagatg gtgccactgc actgccagcc tgggtaacag agcgagactc 2701 tgtcccaaaa gaataataat aagaagaatt ataagttcaa cttgggatat ctcaagcttt 2761 taaaaaagtc tggagggtag aggtaaaaag atcatactac tacagtaagc tacatgctat 2821 cacaaatgac aaaattaatt ttccattccc tcagccttgt tttggttgtg gcaaatgtaa 2881 aatggccatg aactacatat cttacagtat ttgatatcca gtgttagtct ttataaacag 2941 aataataaga tttgattgtt actttttcac tcctacactg actgggagtt agtaaaattg 3001 tttctggcat tatagttctg catgaaattc ttcttttttt catcagtttg ctaaaataaa 3061 ataattaaaa atatttcaga agtagccaaa aatagtgttt aggctaatag taggcaatat 3121 atgccaatgt atagacttag atactggttt cttcctcgtt ttcagctttt cagattatcc 3181 tcttttcctc ctcctttttc ctcaccagta acatttaggc ttgtcactgg cccctgtgag 3241 caccactagc acaaacataa ttcaaaaagg taaagaggtt gtacgttcta tcttttgact 3301 ttggtttgtg tgggattggc ttttttcttt tttttttttt tttttttttt ttattctttt 3361 tgtgtgaaat aagatcttgc tctgtctccc aggctggagt ccagtggtgc agttatggct 3421 ggtgtgatca tggctcactg cagctgcaac ctccaggccc aagcagttct ctcacctcag 3481 cctccccagc tccagctact gctaatttta aaatttttgt agagtcagtg ggtggaggag 3541 tctccttatg ttgcccaggc tggtctcaaa ctcctgggat aaagtgattc tcctgcctca 3601 gcctcccaca gctttggaat tacaggcatg agccaccata ccaggttgag attggctttc 3661 aatggctcca gaaagctgta gggagaatga cttcaactaa atataagaag aaaatttata 3721 ataactagaa ctaactgggc ttccttgaaa cagtgggttc tccagcattg aagatattca 3781 gacaaaagct ggatagatgc cacttgttga gattgtttta gagaggactc ggccattgga 3841 tagggagtaa aaatagactt ctaaattcct ttcagtttta agattctctt acttgatctg 3901 tgatctccgg tttctccatt agtcttctgc agcatccctt tgtggtaatg taatattata 3961 gaagtaaatt gttgtggggc aactgcaagt gatttcagga agtaacttca ggcaaaggtt 4021 gttacagaag atgtttctgt cttggaattc atgcatctcc aaacgatgag gccatagtct 4081 tttttttttt tttgagacag ggtctcactc tgtcacccag gctggagtgc agtggcatga 4141 tcttggctca atgcaacctc ctcctcccag gctcaagcca tcctcccacc ccagcctcct 4201 gagtagctgg gaccacaggc acacactacc acacccggct gtttttttgt atttttagta 4261 gagatggggt ttcgacttgt tgcacaggct ggtcatgaat tcctgagctc aagccattag 4321 ttagttttcc tgatcctctc cctccaccct cctgtaggcc tcagtgtgtg ttgtccccac 4381 tatgtgtcta tgtgttctca tcatttagct cccacttaaa agtgagaaca tgtggta //