LOCUS ADFV01085952 7386 bp DNA linear PRI 31-AUG-2010 DEFINITION Nomascus leucogenys contig_125959, whole genome shotgun sequence. ACCESSION ADFV01085952 ADFV01000000 VERSION ADFV01085952.1 DBLINK BioProject: PRJNA13975 BioSample: SAMN02981257 KEYWORDS WGS. SOURCE Nomascus leucogenys (northern white-cheeked gibbon) ORGANISM Nomascus leucogenys Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hylobatidae; Nomascus. REFERENCE 1 (bases 1 to 7386) AUTHORS Carbone,L., Harris,R.A., Gnerre,S., Veeramah,K.R., Lorente-Galdos,B., Huddleston,J., Meyer,T.J., Herrero,J., Roos,C., Aken,B., Anaclerio,F., Archidiacono,N., Baker,C., Barrell,D., Batzer,M.A., Beal,K., Blancher,A., Bohrson,C.L., Brameier,M., Campbell,M.S., Capozzi,O., Casola,C., Chiatante,G., Cree,A., Damert,A., de Jong,P.J., Dumas,L., Fernandez-Callejo,M., Flicek,P., Fuchs,N.V., Gut,I., Gut,M., Hahn,M.W., Hernandez-Rodriguez,J., Hillier,L.W., Hubley,R., Ianc,B., Izsvak,Z., Jablonski,N.G., Johnstone,L.M., Karimpour-Fard,A., Konkel,M.K., Kostka,D., Lazar,N.H., Lee,S.L., Lewis,L.R., Liu,Y., Locke,D.P., Mallick,S., Mendez,F.L., Muffato,M., Nazareth,L.V., Nevonen,K.A., O'Bleness,M., Ochis,C., Odom,D.T., Pollard,K.S., Quilez,J., Reich,D., Rocchi,M., Schumann,G.G., Searle,S., Sikela,J.M., Skollar,G., Smit,A., Sonmez,K., ten Hallers,B., Terhune,E., Thomas,G.W., Ullmer,B., Ventura,M., Walker,J.A., Wall,J.D., Walter,L., Ward,M.C., Wheelan,S.J., Whelan,C.W., White,S., Wilhelm,L.J., Woerner,A.E., Yandell,M., Zhu,B., Hammer,M.F., Marques-Bonet,T., Eichler,E.E., Fulton,L., Fronick,C., Muzny,D.M., Warren,W.C., Worley,K.C., Rogers,J., Wilson,R.K. and Gibbs,R.A. TITLE Gibbon genome and the fast karyotype evolution of small apes JOURNAL Nature 513 (7517), 195-201 (2014) PUBMED 25209798 REFERENCE 2 (bases 1 to 7386) CONSRTM Gibbon Genome Sequencing Consortium TITLE Direct Submission JOURNAL Submitted (29-JAN-2010) Human Genome Sequencing Center, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA REFERENCE 3 (bases 1 to 7386) CONSRTM Gibbon Genome Sequencing Consortium TITLE Direct Submission JOURNAL Submitted (09-OCT-2012) Human Genome Sequencing Center, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA COMMENT The members of the Gibbon Genome Sequencing Consortium are the Baylor College of Medicine Human Genome Sequencing Center and the Genome Sequencing Center at Washington University. DNA for both the BAC library and the WGS sequence was isolated from blood provided by Alan Mootnick (Director, Gibbon Conservation Center, Santa Clarita, California) from a female named Asia (international studbook #0098), The CHORI-271 BAC Library was constructed by Boudewijn ten Hallers and Baoli zhu in Pieter deJong's laboratory (BACPAC Resources, Children's Hospital Oakland Research Institute). DNA was sequenced using Sanger methods by the Baylor College of Medicine Human Genome Sequencing Center, and the Genome Center at Washington University. The genomic sequence was assembled by Sante Gnerre and David Reich (Broad Institute of Harvard and MIT) using the methods described (Genome Biology 2009; 10(8):R88). The mitochondrion was assembled by Yue Liu (BCM-HGSC) using Phrap (http://www.phrap.org); reads with similarity to mitochondrial sequences were assembled using Phrap with default parameters. Funding for the sequencing of the white-cheeked gibbon genome was provided by the National Human Genome Research Institute, National Institutes of Health (NHGRI). ##Genome-Assembly-Data-START## Assembly Method :: Arachne Assembler, assisted with Human NCBI build 36 (UCSC hg18); Phrap for mitochondrial sequences Assembly Name :: Nleu_3.0 Genome Coverage :: 5.6x in Q20 bases Sequencing Technology :: Sanger ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..7386 /organism="Nomascus leucogenys" /mol_type="genomic DNA" /isolate="Asia; international studbook 0098" /db_xref="taxon:61853" /sex="female" /tissue_type="blood" BASE COUNT 1859 a 1551 c 1528 g 2448 t ORIGIN 1 ctgaagctcc aatgtggtgg aattcccctg tcgcctcctt cctcgtatct gcagcgccta 61 tcgcagagcc gcttaatctt tgttgaaggc cgctgcggtt cagccctgag ggccacggga 121 cggacgccac tcattcagcc ctacaggggg cgctgtggca gccggcattg gttgccgtac 181 cttccacttg tctcgctcag ctctcgagcc acacgccctg ggctccgccc actccctgac 241 aatatccctc ctgcccattg gacgagcttg gacggggctg tccaatggag cgaggcgttg 301 ttgcgaggat gcgccgccat cttggggctg ctgggactcg cgtcggttgg cgactcccgg 361 agataggtag tttgttgggc cgggttgtga ggccttgctt ctctttactt ttccactcta 421 ggccacgatg ccgcagtacc agacctggga ggagttcagc cgcgctgccg agaagcttta 481 cctcgctgac cctatgaagg taaatggctg gcggggccgc tgctttgggc cccggcccag 541 gatgtcttcc cgccatccac tcggcccctg gagcatcccc agcgctccca ggaggtgctg 601 ggaatgaaca caaatggacg ctgccaagtt aatgttccgc tgtctcgtcc cattcgtccc 661 tgatctagcg gcccagtgag gccctcaagc tggcaacagc caggttcacc tcagccctaa 721 acattctgca atcgatcttc ccgccccagt ccctcaactt cctttatggc ttcggatgtt 781 ttacgagtcc ctgaagccag ggctcctccc cctgcagctt cctgtccttt gtctttgttc 841 acttttcctg taccgcctag gcggtaaggg tacctcatgt atataaaact gatgatgttt 901 ttctactgcc gctcagacat tcttgaaaga ttacaatttg gaagcatctg taccccccag 961 aatattggtt cttagtattt tgggagtcac aggctttgag aacataagaa taatatttgc 1021 acctttcctc agaaaaatgc acgtataagt aaatgtttgc agacaatttt aagggattca 1081 tggacctctg aaatacattc ttagccccca caaaaattat aatggaggta gatgtcagag 1141 gttagctcat tattaaaaag caaaggagtc caagtgatgg gagtttagca ttcgggtctt 1201 acttttcgcc ccttgaggtt ttgcttattt tatttttcat gcgcgtccgt gtgaagagac 1261 caccaaacag gctttgtgtg agcaataaag cttttaatca cctgggtgca ggtgggctga 1321 gtccaaaaag agagtcagca aagggtggtg gattatcatt aattcttaca ggttttggga 1381 taggcggtgg agttaggagg aatgttttgt gggggcagga ggtggatctc tcaaagtaca 1441 ttctcaaggg tagggagaat tacaaagaac cttcttaagg gtgggggaga ttacaaagta 1501 ccttcttaag ggtgggggag attacaaagt acattgatca gttagggtgg ggcaggaaca 1561 aatcacaatg gtggaatgtc atcagttaag gctattttta cttcttttgt gaatcttcag 1621 ttacttcagg ccatctgggt gtatacgtgc aagtgacagg ggatgcgatg gcttggcttg 1681 ggctcagagg cctgacatta ttgtcatgtc taagagttat ttgaagcatc ttcctgttaa 1741 ttaaaagttc tgcttctttt tagaactcag catattgaag gggttttata ctggaaatct 1801 catacctggt tatgtatgat gcttcttttg ttttctgtct gttctaattc agtcatctct 1861 tgtgctccat tcatttccca ctctcgtgtt accgacccca agttaaatta ggttctgtgg 1921 gagacacaaa ggtgaatgag attccgttca acccttaagg agctggtatt atagatacag 1981 tgtattgtga ctgtatccct cagagaagaa agaaaattaa aagcagataa tctcggaaaa 2041 ccggggctca ggatcttttt ttttgttttt ttaatttttt tatttttttt gagacagaat 2101 ctcgcactgt cgcccggact agagtgcaat ggctcaatct cagcgcactg caacctccac 2161 tttctgggtt caaacgattc tcctgcctca gcttcgcaag tagctgggtt tacaggcgcc 2221 ggacaccaca cctggctaat ttttgtattt ttgatagagg cgggctttca ccatgttggc 2281 caagcaggtc tggaactcct gacctcgcga tccacccgcc ttggcctccc aaagtgttga 2341 gattacaggt gtgagccact gcgcccagcg cggggctcag gatttactgt gtgaaactgt 2401 tgatgatcat taagtaatat gaattatgtt ttaagtgtat gcagtgagct ggtaacctgt 2461 aactccaatg ccacatactg tttatagtgc atataagttt aaagtgtgca gcaagaaatg 2521 ttgataatta tgattaaaaa tagtattaga cccacagaaa gacctaggta agtaacaagc 2581 tgtaaaacat tcttctattt tttacaataa aatgatacaa taataaatga tggaaacatt 2641 gtatttttaa aaaatacttg agaaacagta aagaatagat aaattcacat caagagtgac 2701 tgtactgtaa gaatgtgatg gcagtggtag ggaaaatgaa aataattaga gcatcactgt 2761 gagcaaagca tatctagaat agatgagaga gagaatattt cacctcttac ccagtcagaa 2821 aattgcagtt ggcacaggct ggagtgcagt ggcacaaatc acagttcact gcagcattga 2881 actgggctcg agtgatcctc ccacttcagc ctcctgagta gctgagacta cagacatgcc 2941 actatgcctg cctaattttt tttttttttt tttttaagac gggggtcttg ttttgttgcc 3001 caggttggtc ttaaatcctt gcctcaggcg attctcctgc ctcagcttcc caagtagctg 3061 ggattacaga cgcaagccat ggcgcctggc ttgactgata cgttgagagg ggagaggatg 3121 agtgtagagg aagagcttaa cagttttttt tgtttgtttg ttttccaaga tggagttctg 3181 ttcttgttgc ccaggctgga gggcaacggc gcaatcttgg ctcactgcaa cctctgcctc 3241 taagtgacag gcattttaca tatgtttata tgttacaggc gtttaatata tatgtgtatt 3301 tacatagatt tatacataat acatgaacaa ttacagcaac ccatcaaagt atataaatga 3361 atgattttag atatgttaag tgatttgcct agtttctcaa aagattaaca tgcaatttgg 3421 acccagatct ttgaacccca agtccattct ctttctgcta gggctaaaga acacattttg 3481 tcaggtctct ggaatctgtt ttccaaaatt ctctgtcttc tctccgcaac acatttaacc 3541 tgttgatcat acccagtatc tttttaccac tatgtcttgc attgctataa ttgaagatgg 3601 cattaccact ggattatgta ataacctctt tgttggtctg tcagcctttt tagttcctta 3661 acactcctac cataactgtc taaaaaacaa aagttgaatt cttcatctcc tgcctaaaaa 3721 ctggttcttt gataactgga tatagtccca actcccagtc acagtctgac ccatctctag 3781 tctttctggc tttgtctcac cattttcatg ctcttcagct ctagtctcat gaagctacag 3841 aattgtatcc ttgttcagaa tggtttttag cctttcttct gccttcttct ataaggttaa 3901 aaaaaaaaca gtattttcaa agccacctcc ttttttagac tttccttttt cccagtctaa 3961 attacttgtt ttctctcttt agcattttat ctgtatatcc ctttatagga cttaattcat 4021 tttgtccttg tgttttggtt ttttttggta aagaaccttg atttttcttt ctttatggca 4081 tctgacatgg tgactcggca ccctctaaat taccaaatgg acccctttat aagtatgatt 4141 ggcctttttt cttttctttt cttttctttt ttttttttgt ttgagacaga gtttgctttg 4201 tgtctaggct ggagtgcagt ggtgcgatct cagctcactg caacctccat ctcccaggtt 4261 caagcgattc tcgtgcgtca gcctcccgag cagctgggac tacaggcacc cgccaccatg 4321 cccagctaat ttttgtattt ttagtagaga cggggtttca ccatcttggc cagactggtc 4381 tcgaactcct cacctcgtga gtgaactctt gccctcccaa agtgctggga ttacaggcat 4441 gagccattgc gcccagccat gattggcctt ttaactctca ttcctcctaa atgaaaccag 4501 tgagtgttcc tttaactgag agttaaaact tcacatagtt gtcatgctta gtatatttta 4561 agtgtttcgt ttctagagaa ctgaattttt aaaatatgta aaactgaatt tactagatca 4621 ataaatagaa tcaggtattc taaagataat taacctagtt attactattt gtacctgctt 4681 aaatgcttga tgagttccct ttccttcttc actcagacaa atcgcatata gtcatgtaac 4741 tttttttttc aatctcagga atgcaaagac cataatgggg aaagctgtcg gttgcagttc 4801 cattagccct ctttatttag tttccagaat tgtcttgagg cctctggtgc tagattgtaa 4861 ccattttaaa attatgtttc tgttctggct tgtagataat tagcagtttt tattttattt 4921 tgttttattt ttattttatt tttttgagat ggagtctggc tctgtctcca ggctacagtg 4981 caatggtgcg atctcggctc actgcaagct ccacctccca ggttcacacc attctcctgc 5041 ctcagccacc tgattagctg ggactgcagg cactcaccat cacgcccggc taattttttg 5101 tattttttag tagagatggg gtttcaccgt attagccagg atggtctcaa tctcctgact 5161 ttatgatcca cctgccttgg cctcccaaag tgctggggtt acaggcatga gccactgcac 5221 tcggccaata cttagcagtt tttaaaacag ctagctgaac aagagttact gatactggtt 5281 agggaaaaac tgcgatacac tgtgcttgaa tccatcactg aaagaaaaaa aataatgttc 5341 atggaagtgt tcttgggaga tgtcttatag gaatatgcta atatctaaat gccttggcaa 5401 tctgtagaat attgaacata aagtattgtg taacatggaa cttcagtata ggagttattc 5461 tggtttttgg aaaagttgtt ggtggagact tcttttcaag gcagaattct gcttttttgt 5521 aataatgcat tatgttctgc cgtaatgata aagacctgat tttgctgaat atattagtct 5581 gaatctgctt gctaagatct gtggaaaaat ggaaagtgtg aattgcactg acctgcagca 5641 ctgtttgcta atgaatggat ttggactttt taactagcca tttctgctaa atgtttttcc 5701 tcctcttcct gtcattcctc tgtggctagg tgtgttggtg tatattctta ttggcaagaa 5761 atgcaacctt ataagtctca cagacattcc ctgaatgtgg atgtgttttg agaatgttca 5821 gtacatctct tttcaaactg gctgcaaata aaatatccaa cttttttaag gtcttaaata 5881 aatgatagca aaggaattaa ctaaaatagc tgatttttta ttttaacctc atttcagttt 5941 agtttatagt aaaaatgcct ttagatgttt gggggtattt attctaaaag gatccttttc 6001 agcctacctg aagactaaat tatttatgag aaatgtcatc tgtcttcact gtttctaaat 6061 atgtattttt gtttcaggca cgtgtggttc tcaaatatag gcattctgat gggaacttgt 6121 gtgttaaagt aacagatgat ttagttgtaa gtatacattt ttatttgtta catactttga 6181 gatttgtttg agttaattat ttgtttgaaa ttatttactt agagtttatg gagattaccc 6241 attaggatgc ttattttgca tttcattcaa agatgaagaa ccccattcta gcagctactt 6301 ttatagaccc tcaggaaata atttaacctg ctttcttaat gcattatgtc aagtttaata 6361 agtgctgtct tcagacctta agcaacaaga atgtagagag caaactggat gtaagggagt 6421 aaaagtttcc attaaatgac agtgtttgaa cacaagttac aagctttatt gtatttcctg 6481 tctttgatat gccaattctt gttacttcct catatcccat tcattcctta accctctgcc 6541 atctgttttc tgcatatggt attccaatga aactgctctt tgtgagagca catcagcagc 6601 tcctttattt tcaaacccag tggtcttatt attcatatct tacttgacct ccttgctgct 6661 tttgatacag aaccccactc tttcatagaa ataattattt tggcacttgt gattctgttt 6721 tatcttggcc ttactatttt gtgtttctat tgtttcattc ttctttgctg attttttttt 6781 tttttttttt gatgtgcccc atatatattt gcttctctat gattatgtcc ttgatcgtct 6841 tttcatacag cttctggagc agttcattta gttgagtcta atactgcatc tatctatgtc 6901 tacttgcaaa tatgtgttta gttcatattc ttctgacttt ctgactagta tctgtatctc 6961 acataccctc aaaattcact tgtctacagt ggagattatc atctgttctt aaactagctc 7021 cttctcacgc ctgtaatccc agacctttgg aaggtcaagc aggcggatca caaggtcaag 7081 agattgagac catcctggct aacacggtga aaccccatct ctactaaaga tacaaaaaaa 7141 ttagccaggc gtggtggcag gcacctgtag tcccagctat tcgggaggct gaggtaggag 7201 aatggtgtga acctcggagg cggagcttgc agtgagcaga gatcgtgtca ctgcactcca 7261 gcctgggtga cacagcaaga ctccagctca aaaaaacaaa aaaactagct ccttctgttc 7321 ctaccttcct acctttagtt gcattatttt ccgcgtggtc agaaatctgg ggattttttt 7381 ttattg //