LOCUS ADFV01011341 9521 bp DNA linear PRI 31-AUG-2010 DEFINITION Nomascus leucogenys contig_56340, whole genome shotgun sequence. ACCESSION ADFV01011341 ADFV01000000 VERSION ADFV01011341.1 DBLINK BioProject: PRJNA13975 BioSample: SAMN02981257 KEYWORDS WGS. SOURCE Nomascus leucogenys (northern white-cheeked gibbon) ORGANISM Nomascus leucogenys Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hylobatidae; Nomascus. REFERENCE 1 (bases 1 to 9521) AUTHORS Carbone,L., Harris,R.A., Gnerre,S., Veeramah,K.R., Lorente-Galdos,B., Huddleston,J., Meyer,T.J., Herrero,J., Roos,C., Aken,B., Anaclerio,F., Archidiacono,N., Baker,C., Barrell,D., Batzer,M.A., Beal,K., Blancher,A., Bohrson,C.L., Brameier,M., Campbell,M.S., Capozzi,O., Casola,C., Chiatante,G., Cree,A., Damert,A., de Jong,P.J., Dumas,L., Fernandez-Callejo,M., Flicek,P., Fuchs,N.V., Gut,I., Gut,M., Hahn,M.W., Hernandez-Rodriguez,J., Hillier,L.W., Hubley,R., Ianc,B., Izsvak,Z., Jablonski,N.G., Johnstone,L.M., Karimpour-Fard,A., Konkel,M.K., Kostka,D., Lazar,N.H., Lee,S.L., Lewis,L.R., Liu,Y., Locke,D.P., Mallick,S., Mendez,F.L., Muffato,M., Nazareth,L.V., Nevonen,K.A., O'Bleness,M., Ochis,C., Odom,D.T., Pollard,K.S., Quilez,J., Reich,D., Rocchi,M., Schumann,G.G., Searle,S., Sikela,J.M., Skollar,G., Smit,A., Sonmez,K., ten Hallers,B., Terhune,E., Thomas,G.W., Ullmer,B., Ventura,M., Walker,J.A., Wall,J.D., Walter,L., Ward,M.C., Wheelan,S.J., Whelan,C.W., White,S., Wilhelm,L.J., Woerner,A.E., Yandell,M., Zhu,B., Hammer,M.F., Marques-Bonet,T., Eichler,E.E., Fulton,L., Fronick,C., Muzny,D.M., Warren,W.C., Worley,K.C., Rogers,J., Wilson,R.K. and Gibbs,R.A. TITLE Gibbon genome and the fast karyotype evolution of small apes JOURNAL Nature 513 (7517), 195-201 (2014) PUBMED 25209798 REFERENCE 2 (bases 1 to 9521) CONSRTM Gibbon Genome Sequencing Consortium TITLE Direct Submission JOURNAL Submitted (29-JAN-2010) Human Genome Sequencing Center, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA REFERENCE 3 (bases 1 to 9521) CONSRTM Gibbon Genome Sequencing Consortium TITLE Direct Submission JOURNAL Submitted (09-OCT-2012) Human Genome Sequencing Center, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA COMMENT The members of the Gibbon Genome Sequencing Consortium are the Baylor College of Medicine Human Genome Sequencing Center and the Genome Sequencing Center at Washington University. DNA for both the BAC library and the WGS sequence was isolated from blood provided by Alan Mootnick (Director, Gibbon Conservation Center, Santa Clarita, California) from a female named Asia (international studbook #0098), The CHORI-271 BAC Library was constructed by Boudewijn ten Hallers and Baoli zhu in Pieter deJong's laboratory (BACPAC Resources, Children's Hospital Oakland Research Institute). DNA was sequenced using Sanger methods by the Baylor College of Medicine Human Genome Sequencing Center, and the Genome Center at Washington University. The genomic sequence was assembled by Sante Gnerre and David Reich (Broad Institute of Harvard and MIT) using the methods described (Genome Biology 2009; 10(8):R88). The mitochondrion was assembled by Yue Liu (BCM-HGSC) using Phrap (http://www.phrap.org); reads with similarity to mitochondrial sequences were assembled using Phrap with default parameters. Funding for the sequencing of the white-cheeked gibbon genome was provided by the National Human Genome Research Institute, National Institutes of Health (NHGRI). ##Genome-Assembly-Data-START## Assembly Method :: Arachne Assembler, assisted with Human NCBI build 36 (UCSC hg18); Phrap for mitochondrial sequences Assembly Name :: Nleu_3.0 Genome Coverage :: 5.6x in Q20 bases Sequencing Technology :: Sanger ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..9521 /organism="Nomascus leucogenys" /mol_type="genomic DNA" /isolate="Asia; international studbook 0098" /db_xref="taxon:61853" /sex="female" /tissue_type="blood" BASE COUNT 2704 a 1965 c 2081 g 2771 t ORIGIN 1 caggagctac tcaggaggct ggggcaggag aatcacttga acccaggagg tggagattgc 61 agtgagccaa gatcatgcca ttgcaaccca accctgggtg acatgagcaa aactctctca 121 aaaaagaaaa aaagaaataa ttctgtttct gatacctatg gagaataaat tgggcacatt 181 aaaaaattag attgattaga ttttagtttg ttcaagatag aggctaatat ctctgcactc 241 ttgaacctct gcattcttga gccccaggtg gtaggcaagg tgctggattt atgcaccgtg 301 ctaagtgggc ccaactctgc cttcaccgag ggatctgaag gcctggtcta gggctctgac 361 tctgatgctt aataaacatg tgacctcagc aagtcacgtg tcactgagcc tcagtttcct 421 catgtgtaaa atgacagtaa taatacctgt ctcacttgcc tcagaattga tacaagagca 481 tagtgctctt taaaagctgt aaagtggcat gaaaatacaa ggagttgtta tttctgttgt 541 tctcctgctc tggatcccaa aatgcttatc cattgctcaa gaaaacaaaa gatatataat 601 cttttcaatt tacaagaagg aaaagaagtt atgtcatgat gtaacttctg taacagatga 661 tgtcactaaa actgatcaca ctagggccgt gaacacacca ccctgctcct tcaaaagcag 721 ttttttctct cttcctcttt tccctcattt gctttctcat tttattccat tcatttaatc 781 aacagatact tgctaagtac ctggcaagtg tcaggtcctg taggcaatag aaataaaaca 841 aggaagaaga cagatgagtc actgcctctg agaagctgac atatctgtgg gaggctgtgg 901 tgcagtttga caggtgctat gagaggaaaa gcatgagggg ctcgagagca cctgggaaga 961 ccccgtaacc aaatttgggg ggtcaaggga aggacacttg aggataagta agggttagcc 1021 actcagagag tgggcaggag tgttccagtc aaagggaaca gcacgtgcag aacgcatgga 1081 ggagagcttt gtatggctgg agtcacagtg tgaaggctgg tcagtgagag gggagtgggg 1141 aagtttccca ggacagatgg tgttggggcc ttgtaagcca tggtgagagc ggcagggagt 1201 catctggttc cctgcctata gttttaagca ggaaatcgac atgactgact tgccagttta 1261 ctgtctgtgg taaggcttcc tgctctcagc tcccagagtt ccttgtgaag ccgtgttggt 1321 ggtcctcaag attaagaagg ttgctgacct ctttctaggc aagatttttt tggatagaac 1381 ttagcttatg gcaaccaaac tgactttgtt tacattgttt tctgcgaaga aaacagaaac 1441 ctcttcaaat aaacagtgac tattacttat aaataggcta gtgaaaccgt aattttcagt 1501 gtttccctca caatttgttg tgtggttaca atgtagactt tttttttttt tttgagaagg 1561 agtcttgctc cacttgtacc caggctggag tatggtggcg cgatctcggc tcattgcaac 1621 ctccgcctcc tgggttcaag tgatttagct ggaattacag gcacgtacca ccatgcctca 1681 ctaatttttg tatttttagt agagatgggg tttgccatgt tggccaggct ggtctcgaac 1741 tcctaacctc aggtgatccg cccgtcttgg cctcccaaag tgctgagatt acaggtgtga 1801 gccactgtga ctcgccgaat ttttgcagtc ttaatagaga cagggttttg ccatgttggc 1861 cagcctggtc ttgaatcctg gcatcacgtg atccacccac ctccgcctcc caaagtgctg 1921 ggattacagg cgtgagccac cacgcccagc caacatagac attttaaatg gggatcatat 1981 accagagaga aaattgtgct ctagcaagaa gaccagaaat acttgaatag agaggaacct 2041 ctctgagctt aaatgcaatg ggattttttt tcacagtagg ataattaatt tctgttttca 2101 ttttccccaa tgttacattg gcattggggg ataaaaaata tacccttggg aaggtgtgct 2161 aacttctgca cacctataca tagctgtagt atatatacag ttcggatata gacagcctgt 2221 ctttataaaa gtgactgtca taggacagta agtatatttg acacaggcca tcagcagaaa 2281 tgagagtgcc aagttggaca tagcacaatt ttctcataaa atagtgaaaa ttcaagtcta 2341 cctaattcaa aagtagtttt aagcaagtct aatgcacata taaaagatta gttcaaacaa 2401 acaaaacaca gcacccatgc aatatctcaa ggatactgtt aatagtgcct aacaaggtag 2461 aagatggtat gctgtcactg ccataattat aagctggcat cagtctctac atggtgagca 2521 ttttgtttct tacaatagtg tacaatgaac tcaaagttaa gaatttctgg ccgggcctgg 2581 tggctcatgc ctgtaatccc agcactttgg gaggccgagg caggcggatc acgaggtcag 2641 gagatcgaga ccatcctggc taacatggtg aaaccctgtc tctactaaaa atacaaaaaa 2701 ttagccgggc gtggtggcgg gtgcctgtaa tcccagctac tcgggaggct gaggtaggag 2761 aatggtgtga atccaggagg cggagcttgc agtgagccga gattgcacca ctgcactcca 2821 gcctgggtga cagagcgaga ctctgtatca aaaaaaaaaa aaaagaattt tttacaaaaa 2881 aaaattaaca tatatgtgta tgtgtctgta tgtatatgat ttggttaagc atggcatttg 2941 gaaccaagga ctctggttaa agtactcact ctgccattaa cgtgacatgt atctgtgagc 3001 ttgtcactga ctcatttttc ttttctcacc tcagtttctt catctctgaa ttgacacacc 3061 agtttatcaa tgaaaaggta agctgtaggt cagacatgat gggtcaatgc ctgtaagccc 3121 agcactttgg gagaccaaga cagaagagtc acttgaggcc aggagtttga gaccagcctt 3181 ggcaacatag caagacccta tctccacaca caaaaaattg tttttaatta acttggcatg 3241 atggcttgtg cctgtaatcc tagctactca ggaggctgag gtaggaggat tgctggagcc 3301 cagaaattca agcctatagt gagctatggt tctacgtgaa ctggagagtc agagataaag 3361 ggagtctaca ttttgaggaa gattatttgt ttattatgac cggggagagg actcaggctg 3421 gagtgcagtg gcatgatctc agctcagtgc agcctccacc tcactggaat aagggatcct 3481 cccaccttgg ctttccgagt ggatgggact acaggtgtgt gccacccacc tagttaattt 3541 ttttggtatt ttttgtagag atgagatctc gctatgtgtg tatgcccagg ctggtctcaa 3601 actcctgggc tcacataacc cacccaacct acacctccca aagtgctggg attacaggca 3661 cgagccacca cactcagcca agaccctgcc tcttaaaagt agggcaggag actattttat 3721 tcttctgaga aacaacatca gttatagaaa gactttcttt tgagtcacat tgactcttgg 3781 ttcaaagcct tgcttgagtg ccagctgata catatcctga ccaatttctc tagcctctct 3841 gagcttgttc ttttatttgt aaatgtgcag ctaatagtat ttaacttgct aagtttataa 3901 aagaaacagt gtttatgaaa tcataaaaca gaggactttg tgctttgcaa gtgttcaaca 3961 atgttttcta ccttttaaaa gtaccaaaaa cacttgctaa aaaatgggca tggcagattg 4021 atttaaaaca tttcctcttt acaatgatct agatgtccta cccttaaacc taaatgagag 4081 atggaaatgg aataaaagag atgagataga taaattgctg tttttgttag aaggaatcaa 4141 agaattgtgg ctattacagc catagcagag agcactagta acaaagcccc attccatgtc 4201 agaatcattt ggagaacttt taaaaaaata catgttccaa cttctgtttc tcccagtatg 4261 tatgactctt cctgagcaac cctctagcta aaaatctgga aatgaaataa gataaaataa 4321 aaactgaaag taacataacc tcagaggcca gaaataatgt ttaagcaaga tccagaagag 4381 taggtcagca ctaaagacag ctttcagaaa acccagacat ctacctagcc accatgtgct 4441 ttaacttaag ttctgataac ctaattaggt gtaggagaca ggagctaaac ccaaggtttt 4501 gtccaaggcg ggaacccagt aagtccatat gaaattgaga cccccaaatt gcaatagcct 4561 ccatgtaagg ataaattaga aggtaatctg tgctacagag ggagaatgca aggaaatatg 4621 cttatgttga cttggtttgg ggtagaaggg agaaaaagct ctcccctgaa aattcactac 4681 cacaggacag cttttttttt tttttttttg agacggagtc tcactctatc acccaggctg 4741 gatggagtgc agtggtgcaa tctcggctca ctgcaagctc cgcctcccag gttcatgccg 4801 ttctcctgcc ttagcctccc gagtagctgc gattacaggt gcccgccacc atgcctggct 4861 aattttttgt gcttttttag tagagacagg gtttcaccat gttagccagg acggtctcaa 4921 tctgctgacc tcatgatccg cccaccttgg cctcccaaag tgctgggatt acaggcgtga 4981 gccaccacgc ctggccagga cagctttaaa ggaaatttgc agcctggatt tacaatgatc 5041 agaatggcct gaaaaccatc aaccaaagac tgttctttag cgtcatcttc aattgttggt 5101 acctgaggta ccttcctgct gtgtatccaa agtacctgtc cttccttctc ccccttgcct 5161 ttagctccag tgactaaata ccagggaagc ctgagcctgg gcctgtgttg cccttgagag 5221 attagatcgt atagttggcc aaaacatttt tcactaatat cagtattact tcagcccttt 5281 aagtaagcag agacccactg tgatatcaac agtctttggt cttgactttc aggatacaag 5341 tgggagggga aaataaaaag gagaggaaaa agaagagaac tttttaatgc cttacctgta 5401 tttagaatct attctaatga taacacctcc cctgccccca cctgtcctca caaaacctat 5461 aaaaaaccta aagcaggtcc actctgaact ttagggagga aggtcaggca atgtggatga 5521 aaagtatggt aatttaccta agattattag aatttttggt ttgtcggctt gaatgtatgt 5581 acctgttacc atggttctat cccagcctat ctttaagtgc cttgtttttg cacttcttgg 5641 attccttttt ataatgcggt gctaatccct ttgctgggtc agcatcgagg gcaaacaatt 5701 gattttagaa gtgctgtgcc agttggtgta atcccagaag aaggttggcg tgtgtgacat 5761 tgcatgctga gttgacgtct tagccgacac acatcctttg ctctttcgtt acgtgcttgt 5821 agcaagttgc atgttttatg tgcatattct tggctaggct ggcacaggta agtgccacct 5881 agctcttcct gttcccagcc tgcatttgct atttgagtgg ctgtgggttt ttctagcaga 5941 tgacagtctt tgtttcaaaa ttttaaaaat tcataaatga ctttgttcat tactatccac 6001 caaattccta gcaattgtgc actcaaattt ttggaatgat tattatattt ttgtttagac 6061 tataattagg gcccggaaga tatgattgaa actaggtatt agcttaagga ggtgaggttg 6121 actaggcatt agtgtcctaa gctaaggctg aagaagagtt caggagtcgt gttgaccctt 6181 tagttggcag taaggcaagt gaggaacaga gaaagaactc gtgtggtggt ccagggccaa 6241 tagattgggt tctaggaagg cagcagtggg cagcagtcgg gagtttgatg gacctgcaga 6301 ctgattagtt tctggccaaa atttaggagc cattgttgac aggtatggaa agaaacatcc 6361 tggaccctaa gacctaaaca agtgttcctt atctaggatt ggcaccaagg cagtgggtgg 6421 agctggacgg ttcctaacac ctgttatttt ataaagtaaa tattaggaaa cccctattca 6481 ttttgaatgt gttaatgaaa gtgaactgct aatcacagtt agcacttgta tcttttctac 6541 taaatgtgtg aaatgtgcct tttagggaaa tataatacac attttcattc ttgtttacct 6601 tcttcatacg tagctggttt agaatgaact ttccaaaaca acccttccta tcttctaggc 6661 tgttgacagt gattgacagt gaacaacatt aaaagatgga gaagccagga caggacattg 6721 tatttcttca ctaaattcct ttcccttcat tagtcattgc tgagtctcct gtattcattt 6781 ttcactgatc atcattcacc atttccatct caccgagtcc aagtgtctct ccatacatgt 6841 ttgtccctta ttaccctcta ctaatggaag gctacaaaag ctaatttgtt agagaagtga 6901 gtgaaatata atgtcatcta taaatattag ctctcttctt cactccctgt taataaaagc 6961 agtatatcat ttcagagaga agaaaagacc aggacctatc catttgtaat catactgtgc 7021 acacattcaa ttagccagag gggtaaagtg catattagta ggcagcctgg gagtttgctg 7081 gagcaattaa ttggctttgt catctataag taatagttta aataacttcc tcttgctcac 7141 ttgactgaaa cagccaatca gattcaagca atagatagca tccttaacct tcccaaaaat 7201 agacttaaca ctacaatgtt tgtcttttct tattaaaagc tctatgctgt ttactagttg 7261 accaggtttc tatggggttg tttgtttgtt tgtttgtttg ttttgtgaca gagtcttgct 7321 ctgtcgccca ggttggagtg cagtgatgca atcttggccc actgcaacct ctgcctcctg 7381 ggttcaagtg attctcctgc ctcaccctcc tgcatagctg ggactacagg tgcgcgccac 7441 cacacctggc taattttttt tgtattttta ggggagacag ggttttgcca tgttggccag 7501 gctggtctca aactcctgac ctcaagtgat cctcccgcct cagcctccca aagtgctgag 7561 tttacgggtg tgagctacca tgcccggcct ctgtgggttt tttaatgggg agagtaaggg 7621 gaggaaattt tggtaataac caaggatcca tgtcctgtgt tccatttttt aaaaagtagt 7681 acattattgt gtggtattaa agtgtttttt aattttttta ggatttgact ataaggaaag 7741 aaattctagt atgcaacctg atagcagaaa taaacaagct gttggatttt ggaaatgaat 7801 atgaatttca ttttctttgg tcctaatatc acataatgat tgtttttata caaaaatacc 7861 atatggctaa tgtggaccca atctcctcaa catttgtttg ctgcattgca cacacatttt 7921 tatttatatt tcttttttta tatatggatc ttcaagtggg atgccaagag agatgatatt 7981 tttgaggaag tcagtgcgca ctcaaagagg atatgaaccc ggtctaggtg ttacttggtg 8041 ccctaatatt ctgcttgcat aagaagaaac cttttgtttg tggccttagt tgtcaccaag 8101 agaccattgt taattttgtt taaaagctct tctgttgtgt ttaggtggct ttttaatata 8161 aaggaaagaa aaaaatgaag aacaagttgg gccaaactct taacatttgg ctctatcagg 8221 agtctcatct ccacttcgta gcctcaacta atcctccaca gcctcttgcc agagatttct 8281 taagtcttaa gacttataaa gacgctggca agaaactgca gtgcatcagc aggaacaggt 8341 tgcaaaatga agacaaagcc tctggcaaga cacaggagga ttaatagagg ccaggccatg 8401 aaacagagat gaagccccga gtggtgaaag atcactgaag tcacagtaca gatacagaac 8461 cgggtgttcc gtcatttggg aaatcatgtg gggtgagcca cggggcccag ttggccaggg 8521 gaacaattgg gaattgcagg tcaggagcat cctttgccag aggaagttaa aagcttttag 8581 aactggaagt gctcagagat cccagaacaa cctctagatg taattcacac ctccactctg 8641 ataaggagtg tgagaccagg tggaaaagca ctactgggtc agagagtgaa aataaatcct 8701 aacgaagatg ccagaaagat ttggctaagc actacttaat ggaataaaat tcgtgaccgg 8761 ggtacttcct gtgttcctaa tggtggatta ttttagcctt gctctattag tagtcctcaa 8821 ctttgaaccc agcctctctc ccttcctgtc tcttcccaca tcccattgag tctccccctt 8881 cctggagctt ccccctcctg cttccctccc atgcccctgc cctttccctg tcttctgtct 8941 cttcctccca tttaaaatgt tactttttct caatagcttt atcaaggact actttcctat 9001 aatgttgagt aagaagttcc ccaaagaata gaaaaatcta ctttaattcc aacatctagt 9061 tgcttcagaa acagctgggt aaattggact tacccaagtt ggacttagta atgctgctct 9121 agtttatgcg atgggaacat tttagttggg gcttttgttc attcagcaca tgcagctggg 9181 ggaggaaatg gcattattta acttgtccac agtgtatctt taaatatgaa aaagaaatgg 9241 aacctatgaa tacaaataat caggactctc atcctttctt tagacttaaa aagagagaaa 9301 acaaagactt aaataaacat cttcaacagg tcgtacaatg taaaaagcct ataaaacatt 9361 gcaacaagga tatatgcctt gagtgcttca atcacgggga atattcctct catgttttac 9421 tgcagttgat tatggcagag caccagcatg gattttgtac cttaacctca cctgtgtcct 9481 cacacacccc cacagaaaga atgccttcct attgatgaat c //