LOCUS ADFV01003234 7461 bp DNA linear PRI 31-AUG-2010 DEFINITION Nomascus leucogenys contig_3233, whole genome shotgun sequence. ACCESSION ADFV01003234 ADFV01000000 VERSION ADFV01003234.1 DBLINK BioProject: PRJNA13975 BioSample: SAMN02981257 KEYWORDS WGS. SOURCE Nomascus leucogenys (northern white-cheeked gibbon) ORGANISM Nomascus leucogenys Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hylobatidae; Nomascus. REFERENCE 1 (bases 1 to 7461) AUTHORS Carbone,L., Harris,R.A., Gnerre,S., Veeramah,K.R., Lorente-Galdos,B., Huddleston,J., Meyer,T.J., Herrero,J., Roos,C., Aken,B., Anaclerio,F., Archidiacono,N., Baker,C., Barrell,D., Batzer,M.A., Beal,K., Blancher,A., Bohrson,C.L., Brameier,M., Campbell,M.S., Capozzi,O., Casola,C., Chiatante,G., Cree,A., Damert,A., de Jong,P.J., Dumas,L., Fernandez-Callejo,M., Flicek,P., Fuchs,N.V., Gut,I., Gut,M., Hahn,M.W., Hernandez-Rodriguez,J., Hillier,L.W., Hubley,R., Ianc,B., Izsvak,Z., Jablonski,N.G., Johnstone,L.M., Karimpour-Fard,A., Konkel,M.K., Kostka,D., Lazar,N.H., Lee,S.L., Lewis,L.R., Liu,Y., Locke,D.P., Mallick,S., Mendez,F.L., Muffato,M., Nazareth,L.V., Nevonen,K.A., O'Bleness,M., Ochis,C., Odom,D.T., Pollard,K.S., Quilez,J., Reich,D., Rocchi,M., Schumann,G.G., Searle,S., Sikela,J.M., Skollar,G., Smit,A., Sonmez,K., ten Hallers,B., Terhune,E., Thomas,G.W., Ullmer,B., Ventura,M., Walker,J.A., Wall,J.D., Walter,L., Ward,M.C., Wheelan,S.J., Whelan,C.W., White,S., Wilhelm,L.J., Woerner,A.E., Yandell,M., Zhu,B., Hammer,M.F., Marques-Bonet,T., Eichler,E.E., Fulton,L., Fronick,C., Muzny,D.M., Warren,W.C., Worley,K.C., Rogers,J., Wilson,R.K. and Gibbs,R.A. TITLE Gibbon genome and the fast karyotype evolution of small apes JOURNAL Nature 513 (7517), 195-201 (2014) PUBMED 25209798 REFERENCE 2 (bases 1 to 7461) CONSRTM Gibbon Genome Sequencing Consortium TITLE Direct Submission JOURNAL Submitted (29-JAN-2010) Human Genome Sequencing Center, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA REFERENCE 3 (bases 1 to 7461) CONSRTM Gibbon Genome Sequencing Consortium TITLE Direct Submission JOURNAL Submitted (09-OCT-2012) Human Genome Sequencing Center, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA COMMENT The members of the Gibbon Genome Sequencing Consortium are the Baylor College of Medicine Human Genome Sequencing Center and the Genome Sequencing Center at Washington University. DNA for both the BAC library and the WGS sequence was isolated from blood provided by Alan Mootnick (Director, Gibbon Conservation Center, Santa Clarita, California) from a female named Asia (international studbook #0098), The CHORI-271 BAC Library was constructed by Boudewijn ten Hallers and Baoli zhu in Pieter deJong's laboratory (BACPAC Resources, Children's Hospital Oakland Research Institute). DNA was sequenced using Sanger methods by the Baylor College of Medicine Human Genome Sequencing Center, and the Genome Center at Washington University. The genomic sequence was assembled by Sante Gnerre and David Reich (Broad Institute of Harvard and MIT) using the methods described (Genome Biology 2009; 10(8):R88). The mitochondrion was assembled by Yue Liu (BCM-HGSC) using Phrap (http://www.phrap.org); reads with similarity to mitochondrial sequences were assembled using Phrap with default parameters. Funding for the sequencing of the white-cheeked gibbon genome was provided by the National Human Genome Research Institute, National Institutes of Health (NHGRI). ##Genome-Assembly-Data-START## Assembly Method :: Arachne Assembler, assisted with Human NCBI build 36 (UCSC hg18); Phrap for mitochondrial sequences Assembly Name :: Nleu_3.0 Genome Coverage :: 5.6x in Q20 bases Sequencing Technology :: Sanger ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..7461 /organism="Nomascus leucogenys" /mol_type="genomic DNA" /isolate="Asia; international studbook 0098" /db_xref="taxon:61853" /sex="female" /tissue_type="blood" BASE COUNT 1943 a 1680 c 1840 g 1998 t ORIGIN 1 acttgaacct gagaaaccat ttggaatgac tgtatgacta aatcattttt taaataaaaa 61 aaatcacatt tacccaggcc cttttgagca tcacgcccat tttctctccc actttatgtt 121 taaagcaact agagatgttg aaccctaaca aaacgtagtc gagtttaata tactacgagg 181 gaggggctgg cagtaatttt cctttaaata tttaatctaa acataaattc tgttattaag 241 ggtaggggga aaaaacctca catagataat tttaactgca gtttgaggtt taagcaacat 301 aaagtcttct aaccccagtc ccctttcttc tccttccgcc cctccccaac cccgccccat 361 aatggatgct cggccgactg cttctgcacg gtctctttgt ctaaaggatg caaacagtct 421 acggatgcta gagaaaaagg ggtgggggag agattacctc atcccacgtc gcttgcacca 481 atcaccagtc tcctgtcatg gcttctctgg gcagattggg ggtctggacc aacaggaaaa 541 ggccccggcc catccccatg gtgaccgagt tgtatatagg gagccgtatc cgcccatgtg 601 ccgcaggttc tcttacatcg accgcctaag agtcgcgctg taagaagcaa caacctctcc 661 tcctcgtctc cgccatctgc tcggcagccg cgaagcagca accatggtga gaatcggctt 721 cggctctttg tggccgtggg gtggagtcag cgcccccagg ctctgcttgg aaaaccttta 781 agctcttttc tttcgtaagc tctctgggcg agggtggtgg ttatgttttg tgaggtttag 841 cttagcccca aatcctcaag ccccgccgcc accgcagtgc gggtgcagga accgggccag 901 gactgcgccc aggacgcagc agagcgctgg ggaggaacaa aggcggcgcc caggcgcctg 961 tccgagagcc tttcggggcc gcgggcagcc cgtctgccgc gaccgagggg tctggggcgt 1021 cccggctggg ccccgtgtct gtgctcacgg tttcgctgcc accgaggggc ccctttctgt 1081 ctcgcgtcgt tctctgggga ccgggagagg aggaggcacc caaaaagagc gggggcgttg 1141 ggcgagctgg gggacgtggg agggggaacg ggaacaaagc gcagcctggg gttagcgtgg 1201 gaagacccct cgcggtcgtt ggcgttttgg aaagataccc acacattccc gggaaaacat 1261 ggtgagtttc tgccggagcc ccggccagcg ggtgtcaggg cggcgcaggg gcggggttgt 1321 ttgtttctgg cttctatggc gttggagcca ctgggcgggg ttcgccctca ctgaaccttt 1381 tctgtcagga gctgacttaa aaaaaaaaaa aaaaaacttt tcatcattgt ggaactgtag 1441 gctccaaaag ggttttcttt actattataa gttagatgac tttttttttt cttgagcaaa 1501 atcataattc acttacaagc tctttaatgt ctggtctggg gacgccctgc cctgaccgac 1561 tgaatgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tctgggctgc 1621 acgttcagcg agggagaaag cccactttgt gagccccagg gtcccctgat ggtcaggacc 1681 cagggaaacg cccttccccg ccgccccccc gccccgcccc caccacatca gcgaatagac 1741 aatgaaagtg gtagccgtaa agaccacaga gaagaaaacc tctgttggat gcaaagaata 1801 tgaatattat gtggtgggta gagaatctca ggatgaaaat actattttgt tgttttaaat 1861 aaatatttca ttatccttcc actgggcttt tattctttgg taccttttca tgtgatgctt 1921 gtttctaact taggaacctt tgagtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgttaa 1981 gatacagata atttttcagc ttttacagtg gagaagatct ggaaaaacct tttttttaaa 2041 aaaaaaagta atgaaattgc tacagacaaa gaagaattat actccgcatc ccgttgtctt 2101 ttgttctagt gcatcttcat taattcattt caattcaggc acatggtccc gggcggggtc 2161 agaggaggaa aactggcaaa acagctcaat gagatcatgt aggcagttgc tggaaataga 2221 gcttgctctg ttaaataatg tagcagacag tacaggctag caccaggcac agcaaataca 2281 gcaatgcagc aatgcagaag gcagaccttg tctaaacccc tagtattgat ggattctgca 2341 gacagactgc agaagggtgt ggcttcttgc ctcagctgca gtacagatgt ccatgttata 2401 atatcaagtc ctattcagaa gaaactttca tctttattta aaagggaaga aagcagtaaa 2461 attaatccca attgagtcat aattggattt acttcatttt acaaaatttg tgctttgaat 2521 attgaatact ttttaaataa ggaaaatctt ctattcaagc atggtagtag gcacaatggg 2581 ctggtaccac gtgctgaaca ggggcaagcc gacaccatta ttcagtccac acccatatgc 2641 agcatttcta gcaggtgatt ttccttaatc tttgtatcgt gctggggata tgacctcaaa 2701 taattttgaa aaatatctgt atattattag aaatattttt agaaatttac taaaagtttg 2761 aaatgctaat acaccttaat tttataattt tttcactttt cctccccaca gcgtgagtgc 2821 atctccatcc acgttggcca ggctggtgtc cagatcggca atgcctgctg ggagctctac 2881 tgcctggaac atggcatcca gcccgatggc cagatgccaa gtgacaagac cattggggga 2941 ggagatgact ccttcaacac cttcttcagt gagacgggcg ctggcaagca cgtgccccgg 3001 gctgtgtttg tggacttgga acccacagtc attggtgagt tgacctcagt aacctaagtg 3061 agatcccagg atgctgggac aggaggtctg tccaggggct tctcttgtca ctcacccact 3121 ccctccatcc gtctatccct cctccagatg aagttcgtac tggcacctac cgccagctct 3181 tccaccctga gcagctcatc acaggcaagg aagatgctgc caataactat gcccgagggc 3241 actacaccat tggcaaggag atcattgacc tcgtgttgga ccgaattcgc aagctggtaa 3301 gtatcacata taaatatgca tttaatgcgg tgcggtggtt ccagtgcaag ttgggtggag 3361 tgactgacat cattcattct ttggcaccta ccaaaatgtg gaatagactg cttgctatat 3421 taattggact tctaaatcag atagtcccta ggttatggac agtttgtgga catgtctgtt 3481 ttgccaattc ctcatgctta catcaatgag acatggttca taatctaaaa agtttaaata 3541 gaaattctaa gataatgtgt gctggcatta aaatactaca ttttttttat tcccctacag 3601 gctgaccagt gcaccggtct tcagggcttc ttggttttcc acagctttgg tgggggaact 3661 ggttctgggt tcacctccct gctcatggaa cgtctctcag ttgattatgg caagaagtcc 3721 aagctggagt tctccattta cccggcgccc caggtttcca cagctgtagt tgagccctac 3781 aactccatcc tcaccaccca caccaccctg gagcactctg attgtgcctt catggtggac 3841 aatgaggcca tctatgacat ctgtcgtaga aaccttgata ttgagcgtcc aacctatact 3901 aacctaaata ggttaatagg tcaaattgtg tcctccatca ctgcttccct gagatttgat 3961 ggagccctga atgttgacct gacagaattc cagaccaacc tggtgcccta tccccgcatc 4021 cacttcccct tggccacata tgcccctgtc atctctgctg agaaagccta ccatgaacag 4081 ctttctgtag cagagatcac caacgcttgc tttgagccag ccaaccagat ggtgaaatgt 4141 gaccctcgcc acggtaaata catggcttgc tgcctgttgt accgtggcga cgtggttccc 4201 aaagatgtca atgctgccat tgccaccatc aagaccaagc gtaccatcca gtttgtggat 4261 tggtgcccca ctggcttcaa ggttggcatc aactaccagc ctcccactgt ggtgcctggt 4321 ggagacctgg ccaaggtgca gagagctgtg tgcatgctga gcaacaccac agctattgct 4381 gaggcctggg ctcgcctgga ccacaagttt gacctgatgt atgccaagcg tgcctttgtt 4441 cactggtacg tgggtgaggg gatggaggaa ggtgagtttt cagaggcccg tgaagacatg 4501 gctgcccttg agaaggatta tgaggaggtt ggtgtggatt ctgttgaagg agagggtgag 4561 gaagaaggag aggaatacta attatccatt ccttttggcc ctgcagcatg tcatgctccc 4621 agaatttcag cttcacctta gctgacgggc gttaaagctt tctggttaga ttgttttcac 4681 ttggtgatca tgtcttttcc atgtgtacct gtaatatttt tccatcatgt ctcaaagtaa 4741 agtcattaac atcaaaagct ttgtttcctg tgtttttttc tagaagtgcc ttggttttta 4801 gattcatcta tacttggagt atagagagtc tgcaatatgc tggtggtgtc aaggatccta 4861 cttactctgc cggcacctgt ggggaaaagg gagctcaagg gactagaaag gcagaagccc 4921 tagattctca gactagttta ccacctcaac ccttgcatag ggggtgggga aagtcattct 4981 gctaatctaa agcagattta gctcttcaga ggatggctgg gtagttacta atgagtaatg 5041 tataggaagt gcaagttttg aatatccgct aagatgctgc tgtttaaaat ggcctaacct 5101 tgttagtgta attaagaaat ttccaagtga tctttggctg gtcatggtgg ctcacgcctc 5161 taatcccggc acgaggacga ggcgggtaga tgacttgagc ccaggcattc aagaccagcc 5221 tgggtgacat gatgaaaccc tgtctacaaa gaaatacaaa aatgtgggtg tggtggtatg 5281 cgcctataag cccagctact ggagaggctg atgagattga ggctgtggtg agctgtgatt 5341 gtaccactgc actccagcct tggtgacaga tcctgtctta agaaaaaaca gtgacctggg 5401 aaaacatctg taggaatatt tgagggtggt gaggtaaagg ctgtttccag ccctgttgtg 5461 ataggaaaaa gtaggaccag aactcatggt ggtcaataaa agtcatgcta ggaaaggcta 5521 aacaataagc catatgcatt ggtgggagag gactgcgtta catgagaata aagtggcaac 5581 atttgtaaag gttaggataa aagtttatag catttggcat ggtttacatc cttttcaagt 5641 attttggcta catgtaacag acttgtaggc acagagaatg taaatagagg atttaaccta 5701 ggagaaaatg tagatttcaa atccagaaag cacaggaaaa ttatggctgc tgaagacctt 5761 ggtgtctcct tggttcaaga ctgaaagaat acatgaggca ttttttaaaa agtagaggcc 5821 aggcgcagtg gctcatgcct gtaatcccaa tgctttggga ggctgaggcg ggtggataac 5881 ctgaggtcag gagtttgaga ccagcctggc caacatggag aaactccatc tctactaaaa 5941 gtacaaaatt agccagacat ggtggcgcat gcctgtaatc ccagccactc aggaggctga 6001 ggcaggagaa ctgtttgaac ctggcaggcg gaggttgcag tgagctgaga ttgcgccatt 6061 gcactccagc ctgggcaaca agagcaaaac ttcatctcaa aaaaaaaaaa aagtagagaa 6121 gtctacaatt ctcctagttt tttttctttt tttttagccc agaaatccta taaatttaca 6181 aaatgtagtc agccctccct gtctgtgggt tccatatcta gatttgacta actggattga 6241 aaatacttgg aagcaaccgg ccatagtggt tcatgcctat aataccagca ctttggtcaa 6301 ggcgggagga tcacttgagc ccaggagttt gagatcagcc taggcaacct agggagaccc 6361 tgccattaca aaactgaaaa acaaattagc cagtgtaatt gtgctgctgc atttctgtct 6421 gggtgccaga gaaagatcct atctcaaaat atatatttgg aaaaatggat agttgtgtct 6481 gaactgaaca tgtacttgtc ccctttattc actaaatgat acagtataac agttatttac 6541 atagcattca cattgtatta ggtattataa gtaatttgga aatgacttaa agtatacagg 6601 aagatgtgtg caggttacat gcaaacacca gagttctcta tataaggaac ttgagcattc 6661 atggattttg gtatccttca gggatactaa gggatgactg taactctcag ctccaaagat 6721 aatctgattt ggcatgaaca attcagagaa aaagctttgg tggggagcct acaggcctag 6781 tatagcaaca gaaatgtaac catcacaggc tctaagggaa aacagacata tttatttatt 6841 tatttattta tttatttatt tatttattta tttattgaga cggggtctcg ctctgtctcc 6901 cagtctggag tgcagtggtg cggtctcggc tcactgcaac ctccgcctcc tgggttcaag 6961 tgattctcct gcctcagcct cctgagtagc tgggattaca ggcacccgcc accacgcctg 7021 gctaattttt gtatttttag tagagataga gtttcaccat gttggccagg ctgttctcga 7081 actcctgacc tcatgatctg cccgccttgg cctcccaaag tgctgggatt acaggcatga 7141 gtcgctgggt gtgccgagct gcagacacct ttaaagaact gagaggccca ggtggggcag 7201 ctcacgcctg taatcctatc actttgggag cccaaagtag gtggatcacc tgaggtcagg 7261 agatcgagac cagccaggcc aacatggcga aaccccaaat ctactaaaaa tacaaaatca 7321 gtggccgggt gcagtggctc acgctgagat tatgccactg caccccagcc tgggtgacag 7381 agtgaaactc tcaaaaatat acaataaaac attttaaact gggcaccgta gttcactcct 7441 gtaatcccag cactttggga g //