LOCUS AB263913 5141 bp DNA linear VRL 08-MAY-2007 DEFINITION BK polyomavirus DNA, complete genome, isolate: CAF-5. ACCESSION AB263913 VERSION AB263913.1 KEYWORDS . SOURCE BK polyomavirus ORGANISM Betapolyomavirus hominis Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Sepolyvirales; Polyomaviridae; Betapolyomavirus. REFERENCE 1 (bases 1 to 5141) AUTHORS Zheng,H. and Yogo,Y. TITLE Direct Submission JOURNAL Submitted (23-JUN-2006) to the DDBJ/EMBL/GenBank databases. Contact:Huai-Ying Zheng Department of Urology, Faculty of Medicine, The University of Tokyo; 7-3-1, Hongo,Bunkyo-ku, Tokyo 113-8655, Japan REFERENCE 2 AUTHORS Zheng,H., Nishimoto,Y., Chen,Q., Hasegawa,M., Zhong,S., Ikegaya,H., Ohno,N., Sugimoto,C., Takasaka,T., Kitamura,T. and Yogo,Y. TITLE Relationships between BK virus lineages and human populations JOURNAL Microbes Infect. 9, 204-213 (2007) COMMENT FEATURES Location/Qualifiers source 1..5141 /db_xref="taxon:1891762" /geo_loc_name="Central African Republic:Bangui" /isolate="CAF-5" /isolation_source="urine" /mol_type="genomic DNA" /organism="BK polyomavirus" CDS 268..468 /codon_start=1 /product="Agnoprotein" /protein_id="BAF42880.1" /transl_table=1 /translation="MVLRQLSRQASVKVGKTWTGTKKRAQRIFIFILELLLEFCRGED SVDGKNKSTTALPAVKDSVKDS" CDS 504..1559 /codon_start=1 /product="VP2" /protein_id="BAF42881.1" /transl_table=1 /translation="MGAALALLGDLVASVSEAAAATGFSVAEIAAGEAAAAIEVQIAS LATVEGITSTSEAIAAIGLTPQTYAVIAGAPGAIAGFAALIQTVSGISSLAQVGYRFF SDWDHKVSTVGLYQQSGMALELFNPDEYYDILFPGVNTFVNNIQYLDPRHWGPSLFAT ISQALWHVIRDDIPSITSQELQRRTERFFRDSLARFLEETTWTIVNAPINFYNYIQQY YSDLSPIRPSMVRQVAEREGTRVHFGHTYSIDDADSIEEVTQRMDLRNQQSVHSGEFI EKTIAPGGANQRTAPQWMLPLLLGLYGTVTPALEAYEDGPNQKKRRVSRGSSQKAKGT RASAKTTNKRRSRSSRS" CDS 861..1559 /codon_start=1 /product="VP3" /protein_id="BAF42882.1" /transl_table=1 /translation="MALELFNPDEYYDILFPGVNTFVNNIQYLDPRHWGPSLFATISQ ALWHVIRDDIPSITSQELQRRTERFFRDSLARFLEETTWTIVNAPINFYNYIQQYYSD LSPIRPSMVRQVAEREGTRVHFGHTYSIDDADSIEEVTQRMDLRNQQSVHSGEFIEKT IAPGGANQRTAPQWMLPLLLGLYGTVTPALEAYEDGPNQKKRRVSRGSSQKAKGTRAS AKTTNKRRSRSSRS" CDS 1444..2532 /codon_start=1 /product="VP1" /protein_id="BAF42883.1" /transl_table=1 /translation="MAPTKRKGECPGAAPKKPKEPVQVPKLLIKGGVEVLEVKTGVDA ITEVECFLNPEMGDPDENLRGFSLKLSAENDFSSDSPERKMLPCYSTARIPLPNLNED LTCGNLLMWEAVTVQTEVIGITSMLNLHAGSQKVHEHGGGKPIQGSNFHFFAVGGDPL EMQGVLMNYRTKYPDGTITPKNPTAQSQVMNTDHKAYLDKNNAYPVECWVPDPSRNEN TRYFGTFTGGENVPPVLHVTNTATTVLLDEQGVGPLCKADSLYVSAADICGLFTNSSG TQQWRGLARYFKIRLRKRSVKNPYPISFLLSDLINRRTQRVDGQPMYGMESQVEEVRV FDGTERLPGDPDMIRYIDKQGQLQTKML" CDS complement(join(2602..4446,4791..5033)) /codon_start=1 /product="Large T" /protein_id="BAF42884.1" /transl_table=1 /translation="MDKVLNREESMELMDLLGLERAAWGNLPLMRKAYLRKCKEFHPD KGGDEDKMKRMNTLYKKMEQDVKVAHQPDFGTWSSSEVPTYGTEEWESWWSSFNEKWD EDLFCHEDMFASDEEATADSQHSTPPKKKRKVEDPKDFPSDLHQFLSQAVFSNRTLAC FAVYTTKEKAQILYKKLMEKYSVTFISRHMCAGHNIIFFLTPHRHRVSAINNFCQKLC TFSFLICKGVNKEYLLYSALTREPYHTIEESIQGGLKEHDFNPEEPEETKQVSWKLIT EYAVETKCEDVFLLLGMYLEFQYNVEECKKCQKKDQPYHFKYHEKHFANAIIFAESKN QKSICQQAVDTVLAKKRVDTLHMTREEMLTERFNHILDKMDLIFGAHGNAVLEQYMAG VAWLHCLLPKMDSVIFDFLHCIVFNVPKRRYWLFKGPIDSGKTTLAAGLLDLCGGKAL NVNLPMERLTFELGVAIDQYMVVFEDVKGTGAESKDLPSGHGINNLDSLRDYLDGSVK VNLEKKHLNKRTQIFPPGLVTMNEYPVPKTLQARFVRQIDFRPKIYLRKSLQNSEFLL EKRILQSGMTLLLLLIWFRPVADFATDIQSRIVEWKERLDSEISMYTFSRMKYNICMG KCILDITREEDSETEDSGHGSSTESQSQCSSQVSDTSAPAEDSQRLDPHSQELHLCKG FQCFKRPKTPPPK" CDS complement(4515..5033) /codon_start=1 /product="small t" /protein_id="BAF42885.1" /transl_table=1 /translation="MDKVLNREESMELMDLLGLERAAWGNLPLMRKAYLRKCKEFHPD KGGDEDKMKRMNTLYKKMEQDVKVAHQPDFGTWSSSEVCADFPLCPDTLYCKEWPICS KKPSVHCPCMLCQLRLRHLNRKFLRKEPLVWIDCYCIDCFTQWFGLDLTEETLQWWVQ IIGETPFRDLKL" BASE COUNT 1535 a 1021 c 1015 g 1570 t ORIGIN 1 gcctcggcct cttatatatt ataaaaaaaa aggccacagg gaggagctgc ttacccatgg 61 aatgcagcca aaccatgacc tcaggaagga aagtgcatga ctgggcaggc agccagtggc 121 agttaatagt gaaaccccgc ccctaaaatt ctcaaataaa cacaagagga agtggaaact 181 ggccaaagga gtggaaagca gccagacaga catgttttgc gagcctagga atcttggcct 241 tgtccccagt taaactggac aaaggccatg gttctgcgcc agctgtcacg acaagcttct 301 gtgaaagttg gtaaaacctg gactggaaca aaaaaaagag ctcagaggat ttttattttt 361 attttagagc ttttgctgga attttgtaga ggtgaagaca gtgtagacgg gaaaaacaaa 421 agtaccactg ctttacctgc tgtaaaagac tctgtaaaag actcctaggt aagtaatccc 481 tttttttttg tatttccagg ttcatgggtg ctgctctagc acttttgggg gacctagttg 541 ccagtgtatc tgaggctgct gctgccacag gattttcagt ggctgaaatt gctgctgggg 601 aggctgctgc tgctatagaa gttcaaattg catcccttgc tactgtagag ggcataacaa 661 gtacctcaga ggctatagct gctataggcc taactcctca aacatatgct gtaattgctg 721 gtgctcctgg ggctattgct gggtttgctg ctttaattca aactgttagt ggtattagtt 781 ccttggctca agtagggtat aggttcttta gtgattggga tcacaaagtt tccactgtag 841 gcctctatca gcaatcaggc atggctttgg aattgtttaa cccagatgag tactatgata 901 ttctgtttcc tggtgtaaat acttttgtta ataatattca ataccttgat cctaggcatt 961 ggggtccttc tttgtttgct actatttccc aggctttgtg gcatgttatt agggatgata 1021 taccttctat aacctcacag gaattgcaga gaagaacaga aagatttttt agagactcct 1081 tggctagatt tttggaggaa actacctgga ccattgtaaa tgcccctata aacttttata 1141 attatattca acaatattat tctgatttgt cccctattag gccctcaatg gttagacagg 1201 tagctgaaag ggaaggtacc cgtgtacatt ttggccatac ttatagtata gatgatgctg 1261 acagtataga agaagttaca caaagaatgg atttaagaaa tcaacaaagt gtacattcag 1321 gagagtttat agaaaaaact attgccccag gaggtgctaa tcaaagaact gctcctcaat 1381 ggatgttgcc tttacttcta ggcctgtacg ggactgtaac acctgctctt gaagcatatg 1441 aagatggccc caaccaaaag aaaaggagag tgtccagggg cagctcccaa aaagccaaag 1501 gaacccgtgc aagtgccaaa actactaata aaaggaggag tagaagttct agaagttaaa 1561 actggggtag atgctattac agaggtagaa tgcttcctaa acccagaaat gggggatcca 1621 gatgaaaacc ttaggggctt tagtctaaag ctaagtgctg aaaatgactt tagcagtgat 1681 agcccagaga gaaaaatgct tccctgttac agcacagcaa gaattcccct ccccaattta 1741 aatgaggacc taacctgtgg aaatctactg atgtgggagg ctgtaactgt acaaacagag 1801 gttattggaa taactagcat gcttaacctt catgcagggt cacaaaaagt gcatgagcat 1861 ggtggaggaa aacctattca aggcagtaat ttccacttct ttgctgttgg tggagacccc 1921 ttggaaatgc agggagtgct aatgaattac aggacaaagt acccagatgg tactataacc 1981 cctaaaaacc caacagccca gtcccaggta atgaatactg accataaggc ctatttggac 2041 aaaaacaatg cttatccagt tgagtgctgg gttcctgatc ccagtagaaa tgaaaatact 2101 aggtattttg ggactttcac aggaggggaa aatgttcccc cagtacttca tgtgaccaac 2161 acagctacca cagtgttgct ggatgaacag ggtgtggggc ctctttgtaa agctgatagc 2221 ctgtatgttt cagctgctga tatttgtggc ctgtttacta acagctctgg aacacaacag 2281 tggagaggcc ttgcaagata ttttaagatc cgcctgagaa aaagatctgt aaaaaatcct 2341 tacccaattt cctttttgct aagtgacctc ataaacagga gaacccagag agtggatggg 2401 cagcctatgt atggtatgga atcccaggta gaagaggtta gggtgtttga tggcacagaa 2461 agacttccag gggacccaga tatgataaga tatattgaca aacagggaca attgcaaacc 2521 aaaatgcttt aaacaggtgc ttttattgta catatacatt taataaatgc tgcttttgta 2581 taagccactt ttaagcttgt gttattttgg gggtggtgtt ttaggccttt taaaacactg 2641 aaagccttta cacaaatgta actcttgact atgggggtct aacctttggg aatcttcagc 2701 aggggctgaa gtatctgaga cttgggaaga gcattgtgat tgggattcag tgcttgatcc 2761 atgtccagag tcttcagttt ctgaatcctc ttctcttgtg atatcaagaa tacatttccc 2821 catgcatata ttatatttca tccttgaaaa agtatacata cttatctcag aatccagcct 2881 ttccttccat tcaacaattc tagattgtat atctgttgca aaatcagcta caggcctaaa 2941 ccaaattagc agtagcaaca aggtcattcc actttgtaga attctttttt caagtaaaaa 3001 ctctgagttt tgtaaggatt ttcttaaata tattttgggc ctaaaatcta tttgtcttac 3061 aaatctagct tgcagggttt tagggacagg atactcattc attgtaacca agcctggtgg 3121 aaatatttgg gttcttttgt ttaaatgttt cttttctaaa tttaccttaa cacttccatc 3181 taaataatct ctcaaactgt ctaaattgtt tattccatgt cctgaaggca aatcctttga 3241 ttcagcccct gtccctttta catcttcaaa aacaaccatg tactgatcta tagctacacc 3301 tagctcaaag gttagccttt ccatgggtag gtttacattt aaggctttac ctccacacaa 3361 atctaataac cctgcagcta gtgttgtttt tccactatca atgggacctt taaataacca 3421 gtatcttctt ttaggtacat tgaaaacaat acagtgcaaa aaatcaaata taacagaatc 3481 cattttaggt agcaaacagt gcagccaagc aacacctgcc atatattgtt ctagtacagc 3541 atttccatga gctccaaata ttaaatccat tttatctaat atatgattga atctttctgt 3601 tagcatttct tccctggtca tatgaagggt atctactctt ttcttagcta aaactgtatc 3661 tactgcttgc tgacaaatac ttttttgatt tttactttct gcaaagataa tagcatttgc 3721 aaagtgcttt tcatgatact taaagtgata aggttggtct tttttctgac actttttaca 3781 ctcctctaca ttgtattgaa attctaaata catacctaat aataaaaaca catcctcaca 3841 ctttgtctct actgcatact cagtaattaa tttccaagac acctgctttg tttcttcagg 3901 ctcttctggg ttaaaatcat gctcctttaa gcccccttga atgctttctt ctatagtatg 3961 gtatggctct ctagttaagg cactatatag taagtattcc ttattaacac ccttacaaat 4021 taaaaaacta aaggtacaca gcttttgaca gaagttatta attgcagaaa ctctatgtct 4081 atgtggagtt aaaaagaata taatattatg cccagcacac atgtgtctac taataaaagt 4141 tacagaatat ttttccataa gttttttata cagaatttga gctttttctt tagtagtata 4201 cacagcaaag caggcaaggg ttctattact aaatacagct tgactaagaa actggtgtag 4261 atcagaggga aagtctttag ggtcttctac ctttcttttt ttcttgggtg gtgttgagtg 4321 ttgagaatct gctgttgctt cttcatcact ggcaaacata tcttcatggc aaaataagtc 4381 ttcatcccat ttttcattaa aggaactcca ccaggactcc cactcttctg ttccataggt 4441 tggcacctaa agaaaaaata attacttagg gccttttaat attttattat ttatctaaat 4501 ataagttagt taccttaaag ctttagatct ctgaagggag tttctccaat tatttggacc 4561 caccattgca gagtttcttc agttaggtct aagccaaacc actgtgtgaa gcagtcaatg 4621 cagtagcaat ctatccaaac caaaggctct tttcttaaaa attttctatt taaatgcctt 4681 aatctaagct gacatagcat gcaagggcag tgcacagaag gctttttgga acaaataggc 4741 cattccttgc agtacagggt atctgggcaa agaggaaaat cagcacaaac ctctgagcta 4801 ctccaggttc caaaatcagg ctgatgagct acctttacat cctgctccat ttttttatat 4861 aaagtattca ttctcttcat tttatcctcg tcgccccctt tgtcagggtg aaattcctta 4921 cacttcctta aataagcttt tctcattaag ggaagatttc cccaggcagc tctttcaagg 4981 cctaaaaggt ccatgagctc catggattct tccctgttaa gcactttatc catttttgca 5041 aaaattgcaa aagaataggg atttccccaa atagttttgc taggcctcag aaaaagcctc 5101 cacaccctta ctacttgaga gaaagggtgg aggcagaggc g //