LOCUS AB250911 5037 bp DNA linear INV 30-JUN-2009 DEFINITION Plasmodium falciparum rhoph2 gene for RhopH2, complete cds, clone:FVO. ACCESSION AB250911 VERSION AB250911.1 KEYWORDS . SOURCE Plasmodium falciparum (malaria parasite P. falciparum) ORGANISM Plasmodium falciparum Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania). REFERENCE 1 (bases 1 to 5037) AUTHORS Iriko,H., Kaneko,O., Tsuboi,T. and Torii,M. TITLE Direct Submission JOURNAL Submitted (18-FEB-2006) Contact:Osamu Kaneko Institute of Tropical Medicine (NEKKEN), Nagasaki University, Department of Protozoology; 1-12-4 Sakamoto, Nagasaki, Nagasaki 852-8523, Japan URL :http://www.tm.nagasaki-u.ac.jp/protozoology/eng/index.html REFERENCE 2 AUTHORS Iriko,H., Kaneko,O., Otsuki,H., Tsuboi,T., Su,X.Z., Tanabe,K. and Torii,M. TITLE Diversity and evolution of the rhoph1/clag multigene family of Plasmodium falciparum JOURNAL Mol. Biochem. Parasitol. 158 (1), 11-21 (2008) COMMENT FEATURES Location/Qualifiers source 1..5037 /clone="FVO" /db_xref="taxon:5833" /geo_loc_name="Viet Nam" /mol_type="genomic DNA" /organism="Plasmodium falciparum" CDS join(1..1189,1290..1706,1807..1869,1970..2038,2139..2645, 2746..3066,3167..3754,3855..3965,4066..4866,4967..5037) /codon_start=1 /gene="rhoph2" /product="RhopH2" /protein_id="BAG09362.1" /transl_table=1 /translation="MIKVTIFLLLSIFSFNLYGLELNEKVSIKYGAEQGVGSADSNTK LCSDILKYLYMDEYLSEGDKATFEKKCHNVIGNIRNTFSNKNTIKEGNEFLMSILHMK SLYGNNNNNNAGSESDVTLKSLYLSLKGSQNTEGESEVPSDDEINKTIMNFVKFNKYL LDNSNDIKKVHDFLVLTSQSNENLLPNKEKLFEQIVDQIKYFDEYFFASGGKIKVKKG YLKYNFLDIYKQPVCSAYLHLCSRYYESVSIYIRLKKVFNGIPAFLDKNCRKVKGEEF KKLMDMELKHNHIVERFDKYIISDDLYYVNMKVFDLKNVDKIQVSKIDDINNLNIYEH KETMHLSAKNLSRYIDIKKELNDEKAYKQLMSAIRKYVTTLTKADSDITYFVKQLDDE EIERFLIDLNFFLYNGFLRITEDKHLINADDVSPSYINLYRSNNIVALYILKTQYEEN KLSEYRAHKFYRRKRVSNITNDMIKKDFTQTNALTNLPNLDNKKTTEYYLKEYENFVE NFQPDLHDIMKLQLFFTMAFKDCNVNQNFTETSKKLWFDLLYAYDKFGWFYIHPNEVI NSINKTDFVRHVLVSRNFLLKNNDQLTFLETQVAKIVEIINLSLEVDKSPDSLDFSIP MNFFNHKNGYHVMNDDKLKLLTSYEYIDSIANNYFFLSEYKNDVFRTGNNFKLYFNLP NIYSLAYQLFNELAININVITNVPLKKYLKYNASYAYFTLMNMIGKNHDIYSKGSRFV YASYILGLVFFIESHIDIARLKPKDFFFMKQSLPIIDHVYHKDLKTLKKNCTLLTDFM KINKNSQNYSLTHTEEMIKILGLLTVTLWAKEGKKSVYYDDDVSLYRKLMVSCVFNGG ETIQEKLANNIEKSCDISQYGIKSKNLKDMIDINLSIHKWNPAEIEKLAYSFVLSCKM QKLMYKPMNVEKLPLEDYYKLSLAPDMVKTYHCYKLGKQAAELLESIILKKKFVRFRV TDAIDVYDFFYIKKVLSSRIKKEYNEFLQDKRAFEKKELETILNNSPFSEEQTMKLIN SYECHWFTSYENFRILWMHASSNLGTGTYLKNFFSELWQNIRFLFKSKLKIRDMEYFS GDISQMNLLDYYSPMVHSESHCQEKMQVLFITLRDSKEENRSEIAQKVKSAYYQCKLD YYKNHHSDFIHRIHPNDFLNNKVYVLKQPYYLMSNVPLNNPKKVSRLFVTEGTLEYLL LDKINIPECFGPCTKLHFNKVVIKESKQRIYDMTINNALVPEIQPYNRRKYMTIYINE AYIKNIVSDALTSEEIKRHDIQKGNIKICMGKSTYLTEPILTEEHFNLTHKPVYDFSS VKHNLKVFHMKNEHLVSEDPNDDCFINYPLATINLDISDPYKEISEDLIKNLYILKSS " gap 1190..1289 /estimated_length=unknown gap 1707..1806 /estimated_length=unknown gap 1870..1969 /estimated_length=unknown gap 2039..2138 /estimated_length=unknown gap 2646..2745 /estimated_length=unknown gap 3067..3166 /estimated_length=unknown gap 3755..3854 /estimated_length=unknown gap 3966..4065 /estimated_length=unknown gap 4867..4966 /estimated_length=unknown BASE COUNT 1675 a 518 c 583 g 1361 t ORIGIN 1 atgataaaag tgacaatatt tttgttgctg tccatattta gttttaactt gtatggatta 61 gaattgaatg aaaaggtttc tataaaatat ggagctgagc aaggtgttgg aagtgcagat 121 agcaatacga agttatgtag cgatatattg aaatacttat atatggatga atatttatcc 181 gaaggtgata aggctacttt tgaaaagaag tgtcacaatg ttattgggaa cataagaaat 241 acttttagta ataagaatac cataaaagaa ggaaatgaat ttttaatgag tatattacat 301 atgaaatcat tatatggtaa taataataat aataatgctg gttccgagag tgatgttact 361 ttgaagagtt tatatttaag tttgaaagga tctcaaaata ctgaaggtga atctgaagta 421 cctagtgatg atgaaataaa taagacaatt atgaattttg ttaaattcaa taaatatctt 481 ttagataatt ctaatgatat taaaaaagtt catgactttt tagttttgac tagccaatct 541 aatgaaaatt tattacctaa taaagagaaa ttatttgaac aaatagtaga tcaaattaaa 601 tattttgatg aatatttctt tgcatcaggt ggtaaaataa aagttaaaaa aggttattta 661 aaatataatt tccttgatat ttataaacaa ccagtttgct ctgcttatct tcatctttgt 721 agtagatatt atgaatccgt ttctatatat ataagattga aaaaagtttt taatgggata 781 ccagcattct tagataaaaa ttgtagaaaa gtaaaaggag aagaattcaa aaaacttatg 841 gatatggaat taaaacataa tcatattgtt gaaagatttg acaaatatat aatttctgat 901 gatttatatt atgttaatat gaaagttttt gatttaaaaa atgtagataa aatacaagta 961 tccaaaattg atgatattaa taatctaaat atatatgaac ataaagaaac tatgcatctt 1021 tcagcaaaaa atctatcaag atatatagat ataaaaaaag aattaaatga tgaaaaagca 1081 tataagcaat taatgtcggc catcagaaaa tatgtaacaa cacttactaa ggcagactcg 1141 gatataactt actttgttaa acaattggat gatgaagaaa tagaaagatn nnnnnnnnnn 1201 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1261 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnt tcttatcgac ttaaatttct ttttatataa 1321 cggtttcttg agaattaccg aagacaaaca cctaatcaac gcagatgatg tatctccaag 1381 ttatattaat ttatatagat ctaacaatat tgtagctttg tacatattaa aaacacaata 1441 tgaagaaaat aaattatcag aatacagagc acataaattt tacagaagaa aaagagtttc 1501 caatataacc aacgatatga ttaaaaaaga tttcactcaa actaatgcac ttaccaattt 1561 accaaactta gataataaaa aaaccactga atattattta aaagaatatg aaaattttgt 1621 agagaacttc caaccagatc ttcatgatat catgaaattg caactctttt tcactatggc 1681 ctttaaggac tgcaacgtca accaaannnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1741 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1801 nnnnnnattt caccgagact tccaagaagt tatggtttga tctcttatat gcttacgaca 1861 aatttggatn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1921 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnng gttttatatc 1981 caccccaatg aagtaattaa cagtattaat aagaccgatt ttgttagaca tgttttagnn 2041 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2101 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnntg agcagaaatt ttcttttaaa 2161 aaacaatgat caacttacat ttttggaaac acaagttgcc aagatagttg aaataataaa 2221 tttatctttg gaagttgaca aatcaccaga ttctttagac ttttccatac ctatgaattt 2281 cttcaatcat aaaaatggtt atcatgtgat gaatgatgat aaattaaaat tattaacaag 2341 ttatgaatat attgattcta ttgcaaataa ctattttttc cttagtgaat ataaaaatga 2401 tgttttcaga actggaaata attttaaatt atatttcaac cttccaaata tatacagttt 2461 agcatatcaa ttatttaatg aattagctat taacattaat gttattacta atgttccttt 2521 aaaaaaatat ttaaaataca atgccagtta tgcttatttt actttaatga atatgatcgg 2581 aaaaaatcat gatatctact caaagggttc tcgttttgtt tatgcatcat atattttagg 2641 attagnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2701 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnntcttt ttcattgaat 2761 cccacatcga tattgctcgt ttgaaaccaa aagatttctt tttcatgaaa cagtccttac 2821 caattataga ccacgtttat cacaaagatc ttaagacatt gaaaaagaat tgtactttat 2881 taacagactt tatgaaaatt aacaaaaact cacaaaacta ttcattaaca cacaccgaag 2941 aaatgattaa aatattaggt ttattaactg tcaccttatg ggcaaaagaa ggaaagaaat 3001 cagtatatta tgatgatgat gttagtttat atagaaaatt aatggtcagc tgtgttttca 3061 atggagnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 3121 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnngaga aaccattcaa 3181 gaaaaattgg ctaacaacat tgagaagtca tgtgatatta gtcaatacgg tataaaatct 3241 aaaaatttaa aagacatgat tgatataaac ttaagtatac acaaatggaa cccagctgaa 3301 atcgagaaat tagcctattc ctttgtttta tcttgtaaga tgcaaaaatt gatgtataaa 3361 ccaatgaacg ttgagaaatt acctttagaa gattactaca aattatcctt agccccagat 3421 atggtaaaga catatcactg ttataaatta ggaaagcaag cagctgaatt attagaatct 3481 atcattttaa agaaaaagtt cgtaagattt agagttactg atgctattga tgtatatgat 3541 ttcttttata taaagaaagt tttatccagt cgtattaaga aagaatataa tgaattttta 3601 caagacaaaa gagcatttga aaagaaagaa cttgaaacaa ttttaaacaa tagtccattc 3661 tcagaagagc aaacaatgaa attaataaat agttatgaat gtcactggtt tactagttac 3721 gaaaacttca gaatcttatg gatgcacgca tcaannnnnn nnnnnnnnnn nnnnnnnnnn 3781 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 3841 nnnnnnnnnn nnnngtaatt tgggtactgg tacttactta aagaatttct tctccgaatt 3901 gtggcaaaac attcgtttct tatttaagag caaacttaag atccgtgata tggaatattt 3961 ttcagnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 4021 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnngtgat atatcacaaa 4081 tgaacttatt agattactac tctcctatgg tacattccga atctcactgt caagaaaaga 4141 tgcaagtttt atttataaca ttaagagata gcaaagaaga aaatcgtagt gaaatagctc 4201 aaaaagttaa gagtgcatat taccaatgta aattagatta ctataagaat catcacagcg 4261 attttatcca cagaatacat ccaaatgatt tcttaaataa taaggtgtat gtcttaaaac 4321 aaccatatta tctcatgagt aatgttcctt taaataaccc aaagaaagta tcacgtttat 4381 ttgtaacaga aggtacatta gaatatttat tattagataa gattaatatt ccagaatgtt 4441 tcggaccatg tactaaatta cattttaaca aagtagttat taaagaatca aaacaaagaa 4501 tatatgatat gactataaat aatgctttag taccagaaat acaaccatat aacagaagaa 4561 aatatatgac tatctatata aatgaagcat atattaagaa tatagtttca gatgcattaa 4621 ccagtgaaga aataaaaaga catgatatcc aaaaaggtaa tatcaaaata tgtatgggaa 4681 aaagcacata tcttacagaa cctatattaa ctgaagaaca tttcaattta actcacaaac 4741 cagtatatga tttttctagt gtcaaacaca atttgaaagt tttccatatg aaaaatgaac 4801 atttagtatc tgaggatcca aacgatgact gtttcatcaa ctacccattg gcaactatca 4861 atttagnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 4921 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnatat atctgatcca 4981 tacaaagaaa tcagtgaaga cttaatcaaa aacttgtata tcttaaaaag tagttaa //