LOCUS AB000709 6357 bp mRNA linear VRL 09-SEP-2017 DEFINITION Pepper mild mottle virus mRNA for 126 kDa protein, 183kDa protein, 28kDa protein, 17kDa protein, complete cds. ACCESSION AB000709 VERSION AB000709.2 KEYWORDS . SOURCE Pepper mild mottle virus ORGANISM Pepper mild mottle virus Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Virgaviridae; Tobamovirus; Tobamovirus capsici. REFERENCE 1 (bases 1 to 6357) AUTHORS Kirita,M. TITLE Direct Submission JOURNAL Submitted (25-JAN-1997) Contact:Masanobu Kirita Plant Biotechnology Institute, Laboratory of Biological Control; Ago 3165-1, Iwama, Nishi-Ibaraki, Ibaraki 319-02, Japan REFERENCE 2 AUTHORS Kirita,M., Akutsu,K., Watanabe,Y. and Tsuda,S. TITLE Nucleotide Sequence of the Japanese Isolate of Pepper Mild Mottle Tobamovirus (TMV-P) RNA JOURNAL Nippon Shokubutsu Byori Gakkaiho 63 (5), 373-376 (1997) COMMENT FEATURES Location/Qualifiers source 1..6357 /db_xref="taxon:12239" /isolate="PMMoV-J" /mol_type="mRNA" /organism="Pepper mild mottle virus" /strain="JAPAN" CDS 70..4908 /codon_start=1 /note="read through" /product="183kDa protein" /protein_id="BAA19167.1" /transl_except=(pos:3421..3423,aa:Tyr) /translation="MAYTQQATNAALASTLRGNNPLVNDLANRRLYESAVEQCNAHDR RPKVNFLRSISEEQTLIATKAYPEFQITFYNTQNAVHSLAGGLRSLELEYLMMQIPYG STTYDIGGNFAAHMFKGRDYVHCCMPNMDLRDVMRHNAQKDSIELYLSKLAQKKKVIP PYQKPCFDKYTDDPQSVVCSKPFQHCEGVSHCTDKVYAVALHSLYDIPADEFGAALLR RNVHVCYAAFHFSENLLLEDSYVSLDDIGAFFSREGDMLNFSFVAESTLNYTHSYSNV LKYVCKTYFPASSREVYMKEFLVTRVNTWFCKFSRLDTFVLYRGVYHRGVDKEQFYSA MEDAWHYKKTLAMMNSERILLEDSSSVNYWFPKMKDMVIVPLFDVSLQNEGKRLARKE VMVSKDFVYTVLNHIRTYQSKALTYANVLSFVESIRSRVIINGVTARSEWDVDKALLQ SLSMTFFLQTKLAMLKDDLVVQKFQVHSKSLTEYVWDEITAAFHNCFPTIKERLINKK LITVSEKALEIKVPDLYVTFHDRLVKEYKSSVEMPVLDVKKSLEEAEVMYNALSEISI LKDSDKFDVDVFSRMCNTLGVDPLVAAKVMVAVVSNESGLTLTFERPTEANVALALQP TITSKEEGSLKIVSSDVGESSIKEVVRKSEISMLGLTGNTVSDEFQRSTEIESLQQFH MVSTETIIRKQMHAMVYTGPLKVQQCKNYLDSLVASLSAAVSNLKKIIKDTAAIDLET KEKFGVYDVCLKKWLVKPLSKGHAWGVVMDSDYKCFVALLTYDGENIVCGETWRRVAV SSESLVYSDMGKIRAIRSVLKDGEPHISSAKVTLVDGVPGCGKTKEILSRVNFDEDLV LVPGKQAAEMIRRRANSSGLIVATKENVRTVDSFLMNYGRGPCQYKRLFLDEGLMLHP GCVNFLVGMSLCSEAFVYGDTQQIPYINRVATFPYPKHLSQLEVDAVETRRTTLRCPA DITFFLNQKYEGQVMCTSSVTRSVSHEVIQGAAVMNPVSKPLKGKVITFTQSDKSLLL SRGYEDVHTVHEVQGETFEDVSLVRLTPTPVGIISKQSPHLLVSLSRHTRSIKYYTVV LDAVVSVLRDLECVSSYLLDMYKVDVSTQYQLQIESVYKGVNLFVAAPKTGDVSDMQY YYDKCLPGNSTILNEYDAVTMQIRENSLNVKDCVLDMSKSVPLPRESETTLKPVIRTA AEKPRKPGLLENLVAMIKRNFNSPELVGVVDIEDTASLVVDKFFDAYLIKEKKKPKNI PLLSRASLERWIEKQEKSTIGQLADFDFIDLPAVDQYRHMIKQQPKQRLDLSIQTEYP ALQTIVYHSKKINALFGPVFSELTRQLLETIDSSRFMFYTRKTPTQIEEFFSDLDSNV PMDILELDISKYDKSQNEFHCAVEYEIWKRLGLDDFLAEVWKHGHRKTTLKDYTAGIK TCLWYQRKSGDVTTFIGNTIIIAACLSSMLPMERLIKGAFCGDDSILYFPKGTDFPDI QQGANLLWNFEAKLFRKRYGYFCGRYIIHHDRGCIVYYDPLKLISKLGAKHIKNREHL EEFRTSLCDVAGSLNNCAYYTHLDDAVGEVIKTAPPGSFVYRALVKYLCDKRLFQTLF LE" CDS 70..3423 /codon_start=1 /product="126 kDa protein" /protein_id="BAA19166.1" /translation="MAYTQQATNAALASTLRGNNPLVNDLANRRLYESAVEQCNAHDR RPKVNFLRSISEEQTLIATKAYPEFQITFYNTQNAVHSLAGGLRSLELEYLMMQIPYG STTYDIGGNFAAHMFKGRDYVHCCMPNMDLRDVMRHNAQKDSIELYLSKLAQKKKVIP PYQKPCFDKYTDDPQSVVCSKPFQHCEGVSHCTDKVYAVALHSLYDIPADEFGAALLR RNVHVCYAAFHFSENLLLEDSYVSLDDIGAFFSREGDMLNFSFVAESTLNYTHSYSNV LKYVCKTYFPASSREVYMKEFLVTRVNTWFCKFSRLDTFVLYRGVYHRGVDKEQFYSA MEDAWHYKKTLAMMNSERILLEDSSSVNYWFPKMKDMVIVPLFDVSLQNEGKRLARKE VMVSKDFVYTVLNHIRTYQSKALTYANVLSFVESIRSRVIINGVTARSEWDVDKALLQ SLSMTFFLQTKLAMLKDDLVVQKFQVHSKSLTEYVWDEITAAFHNCFPTIKERLINKK LITVSEKALEIKVPDLYVTFHDRLVKEYKSSVEMPVLDVKKSLEEAEVMYNALSEISI LKDSDKFDVDVFSRMCNTLGVDPLVAAKVMVAVVSNESGLTLTFERPTEANVALALQP TITSKEEGSLKIVSSDVGESSIKEVVRKSEISMLGLTGNTVSDEFQRSTEIESLQQFH MVSTETIIRKQMHAMVYTGPLKVQQCKNYLDSLVASLSAAVSNLKKIIKDTAAIDLET KEKFGVYDVCLKKWLVKPLSKGHAWGVVMDSDYKCFVALLTYDGENIVCGETWRRVAV SSESLVYSDMGKIRAIRSVLKDGEPHISSAKVTLVDGVPGCGKTKEILSRVNFDEDLV LVPGKQAAEMIRRRANSSGLIVATKENVRTVDSFLMNYGRGPCQYKRLFLDEGLMLHP GCVNFLVGMSLCSEAFVYGDTQQIPYINRVATFPYPKHLSQLEVDAVETRRTTLRCPA DITFFLNQKYEGQVMCTSSVTRSVSHEVIQGAAVMNPVSKPLKGKVITFTQSDKSLLL SRGYEDVHTVHEVQGETFEDVSLVRLTPTPVGIISKQSPHLLVSLSRHTRSIKYYTVV LDAVVSVLRDLECVSSYLLDMYKVDVSTQ" CDS 4909..5682 /codon_start=1 /product="28kDa protein" /protein_id="BAA19168.1" /translation="MALVVKDDVKISEFINLSAAEKFLPAVMTSVKTVRISKVDKVIA MENDSLSDVDLLKGVKLVKDGYVCLAGLVVSGEWNLPDNCRGGVSVCLVDKRMQRDDE ATLGSYRTSAAKKRFAFKLIPNYSITTADAERKVWQVLVNIRGVAMEKGFCPLSLEFV SVCIVHKSNIKLGLREKITSVSEGGPVELTEAVVDEFIESVPMADRLRKFRNQSKKGS NKYVGKRNDNKGLNKEGKLFDKVRIGQNSESSDAESSSF" CDS 5685..6158 /codon_start=1 /product="17kDa protein" /protein_id="BAA19169.1" /translation="MAYTVSSANQLVYLGSVWADPLELQNLCTSALGNQFQTQQARTT VQQQFSDVWKTIPTATVRFPATGFKVFRYNAVLDSLVSALLGAFDTRNRIIEVENPQN PTTAETLDATRRVDDATVAIRASISNLMNELVRGTGMYNQALFESASGLTWATTP" BASE COUNT 1881 a 1172 c 1520 g 1784 t ORIGIN 1 gtaaattttt cacaatttaa caacaacaac acaaacaaca aacaacatta caaacaaaat 61 acaactacaa tggcttacac acaacaagct accaacgccg cattagcaag tactctccga 121 gggaataacc ccttggtgaa cgatcttgct aatcggagac tgtacgaatc agcggtcgaa 181 caatgcaatg cacatgaccg caggcccaag gttaattttt taaggtcgat aagcgaagag 241 cagacgctta tcgcaactaa ggcctaccct gagttccaaa tcacgttcta caacacgcag 301 aacgctgtgc acagtctcgc aggtggactt cggtctttgg aactagaata cttgatgatg 361 cagatcccct acggttcaac gacatatgat atcgggggaa attttgctgc tcacatgttt 421 aaaggtcgtg actacgttca ttgctgcatg cctaacatgg acttacgtga cgtcatgcgt 481 cacaatgctc aaaaggatag cattgaactg tacctttcaa agcttgcgca aaagaaaaag 541 gtaataccgc catatcaaaa gccatgcttt gataaataca cggacgatcc gcaatcagta 601 gtgtgctcga aaccttttca gcactgcgaa ggcgtttcgc actgcacgga taaagtatac 661 gctgtcgctt tgcacagttt atacgacatt ccagcagatg aatttggggc agcacttctg 721 aggagaaatg ttcatgtctg ctatgctgcc ttccactttt ctgagaatct tcttttagaa 781 gattcgtatg tcagtcttga cgacataggc gctttcttct cgagagaggg cgatatgttg 841 aacttttctt ttgtagcaga gagtacttta aattatactc attcctatag taatgtgctt 901 aagtatgtgt gtaagactta cttccccgct tctagtagag aagtgtacat gaaggagttt 961 ttggtaacta gggtaaatac ttggttttgt aagttttcaa ggttagatac ctttgtacta 1021 tatagaggtg tataccacag aggtgtagac aaggagcaat tttacagtgc aatggaagat 1081 gcttggcatt acaaaaagac tttggcgatg atgaatagcg aaagaatcct cttagaggat 1141 tcatcgtctg ttaattattg gtttccaaag atgaaagata tggtgatagt acctttgttc 1201 gacgtatctt tacagaacga ggggaaaagg ttagcaagaa aggaggtcat ggtcagcaag 1261 gacttcgttt atactgtgct taatcatatt cgcacatacc agtcgaaagc gcttacttac 1321 gccaatgtat tatcgttcgt tgagtcgata agatcaagag tgataatcaa tggggtgact 1381 gcgcgctcag agtgggatgt ggataaggct ttgttgcagt ccctgtcaat gacttttttc 1441 ttgcagacca aattggccat gctcaaggat gacctcgtgg ttcagaaatt ccaagtgcat 1501 tccaaatcgc tcactgaata tgtctgggat gagattactg ctgcttttca caattgtttt 1561 cctacaatca aggagaggtt gattaacaag aaactcataa ctgtttcgga aaaggctctt 1621 gaaattaaag tacctgattt gtatgtaact ttccacgata gattggttaa ggagtacaag 1681 tcttcggtgg aaatgccggt actggacgtt aaaaagagct tggaagaagc agaagtgatg 1741 tacaatgctt tgtcagaaat ctcaattctt aaagacagtg acaagtttga tgttgatgtt 1801 ttttcccgga tgtgtaatac attaggcgta gatccattgg tggcagcaaa ggtaatggta 1861 gctgtggttt caaatgagag tggtttgacc ttaacgtttg agaggcctac cgaagcaaat 1921 gtcgcacttg cattgcaacc gacaattaca tcaaaggagg aaggttcgtt gaagattgtg 1981 tcgtcagacg taggtgagtc ctcaatcaag gaagtggttc gaaaatcaga gatttctatg 2041 cttggtctaa caggcaacac agtgtccgat gagttccaaa gaagtacaga aatcgagtcg 2101 ttgcagcagt tccatatggt atccacagag acgattatcc gtaaacagat gcatgcgatg 2161 gtgtatactg gtccgctaaa agttcaacaa tgcaagaact atttagacag cctggtagcc 2221 tcgctctctg ctgcggtatc aaacctgaag aagataatca aagacacagc tgctatagat 2281 ctcgagacta aggaaaaatt tggagtctac gacgtgtgcc ttaagaaatg gttggtgaaa 2341 cctctatcaa aaggacatgc ttggggtgtg gtgatggact cagactataa gtgctttgtt 2401 gcgcttctca catacgatgg cgagaacatt gtgtgcggag agacatggcg tagagtcgca 2461 gtgagctccg aatctttggt gtattcagat atggggaaga taagagctat acgctctgtg 2521 cttaaagacg gtgaacccca tataagcagt gcaaaggtta cacttgttga tggtgttcct 2581 ggttgcggaa agacaaagga gattctttct agggtcaact ttgacgaaga tctagttctg 2641 gtaccaggaa aacaggctgc tgaaatgata agaagaaggg caaacagttc tggtttaatc 2701 gtggcgacca aggagaatgt aaggacggta gactctttct taatgaatta cggtcgaggt 2761 ccgtgccaat acaaaaggct gtttctggat gaaggtctaa tgttacaccc tggttgtgtt 2821 aattttctgg ttggcatgtc tctatgctcc gaggcttttg tttatggaga cacccagcag 2881 attccttaca tcaacagagt tgcaactttt ccctatccta agcatttgag tcaactcgag 2941 gtcgatgctg ttgaaactcg cagaacaacg ttgcggtgtc cagctgatat caccttcttc 3001 ttgaatcaga agtacgaagg gcaagttatg tgcacatcaa gtgttacacg ctcggtgtca 3061 cacgaggtca tccaaggtgc agcggtaatg aatccagtgt ctaaaccact taaagggaag 3121 gtgattacat tcactcagtc agacaagtca ttgctgctct cgaggggtta cgaagatgtg 3181 cataccgttc atgaggtgca aggggaaacg tttgaagacg tctcactagt gaggctgacg 3241 cctacacccg tgggaataat ttcaaagcag agtccgcacc tgttggtctc attgtctagg 3301 catacaaggt cgatcaaata ttacacagtt gtgctagatg cagtcgtttc agtgcttaga 3361 gatctggagt gtgtgagtag ttacctgtta gatatgtaca aagttgatgt gtcgactcaa 3421 tagcaattac agatagaatc ggtgtacaaa ggtgttaacc ttttcgtcgc agcaccaaaa 3481 acaggagatg tttctgacat gcaatattat tacgacaagt gtttgccggg aaacagtact 3541 atactcaatg agtatgatgc tgtaaccatg caaatacgag agaatagttt gaatgtcaag 3601 gattgtgtgt tggatatgtc gaaatcggtg cctcttccga gagaatctga gacgacattg 3661 aaacctgtga tcaggactgc tgctgaaaaa cctcgaaaac ctggattgtt ggaaaatttg 3721 gtcgcgatga tcaaaagaaa tttcaactct cccgaattag taggggttgt tgacatcgaa 3781 gacaccgctt ctctagtagt agataagttt tttgatgcat acttaattaa agaaaagaaa 3841 aaaccaaaaa atatacctct gctttcaagg gcgagtttgg aaagatggat cgaaaagcaa 3901 gagaagtcaa caattggcca gttggctgat tttgacttta ttgatttacc agccgttgat 3961 caatacaggc acatgatcaa gcagcagccg aaacagcgtt tggatcttag tattcaaact 4021 gaatacccgg ctttgcaaac tattgtgtat catagcaaga aaatcaatgc gctttttggt 4081 cctgtatttt cagaattaac aagacagctg ctagagacaa ttgacagttc aagattcatg 4141 ttttatacaa ggaaaacgcc tacacagatc gaagaatttt tctcagatct ggactctaat 4201 gttcctatgg acatattaga gctagacatt tccaagtatg acaaatcaca gaacgaattt 4261 cattgtgcag tcgagtatga gatttggaaa aggttaggct tagacgattt cttggctgaa 4321 gtttggaaac acgggcatcg gaagacaacg ttgaaagact acacagccgg aataaaaacg 4381 tgtttgtggt accagaggaa aagcggtgat gtcaccacat tcattggaaa cacgatcatt 4441 attgctgcat gtctgtcctc tatgctaccg atggagagat tgattaaagg tgccttttgt 4501 ggtgatgata gtatattata ctttccaaag ggcactgatt tccccgatat tcaacagggc 4561 gcaaaccttc tctggaattt tgaagccaag ttgtttagga agagatatgg ttacttttgc 4621 ggtaggtaca taattcacca tgacagaggc tgtattgtat attatgaccc tctaaaattg 4681 atctcgaaac tcggtgcaaa acacatcaag aatagagaac atttagagga atttaggacc 4741 tctctttgtg atgttgctgg gtcgttgaac aattgtgcgt actatacaca tttggacgac 4801 gctgtcggtg aggttattaa gaccgcacct cctggttcgt ttgtttatag agcattagtt 4861 aagtacttgt gtgataaaag gttatttcaa acattgtttt tggagtaaat ggcgttagta 4921 gtcaaggacg acgttaagat ttctgagttc atcaatttgt ctgccgctga gaaattctta 4981 cctgctgtta tgacttcggt caagacggta cgaatttcga aagttgacaa agtgattgca 5041 atggaaaacg attcgttatc cgatgtggat ttgcttaaag gtgtaaagct tgttaaggat 5101 ggttatgtgt gtttagcagg gttagttgtg tccggggagt ggaacctacc cgacaactgc 5161 agaggtggag taagcgtttg tttggttgat aagagaatgc aaagagatga cgaagcaaca 5221 cttggatctt atagaaccag tgcagctaag aaacgatttg ccttcaaatt gatcccgaat 5281 tatagcatta ctaccgccga tgctgagaga aaagtttggc aagttttagt taatattaga 5341 ggtgttgcca tggaaaaggg tttctgtcct ttatctttgg agtttgtctc agtttgtatt 5401 gtacacaaat ccaatataaa attaggcttg agagagaaaa ttactagtgt gtcagaagga 5461 ggacccgttg aacttacaga agcagtcgtt gatgagttca tcgaatcagt tccaatggct 5521 gacagattac gtaaatttcg caatcaatct aagaaaggaa gtaataagta tgtaggtaag 5581 agaaatgata ataagggttt gaataaggaa gggaagctgt ttgataaggt tagaattggg 5641 cagaactcgg agtcatcgga cgccgagtct tcttcgtttt aactatggct tacacagttt 5701 ccagtgccaa tcaattagtg tatttaggtt ctgtatgggc tgatccatta gagttacaaa 5761 atctgtgtac ttcggcgtta ggcaatcagt ttcaaacaca acaggctaga actacggttc 5821 aacagcagtt ctctgatgtg tggaagacta ttccgaccgc tacagttaga tttcctgcta 5881 ctggtttcaa agttttccga tataatgccg tgctagattc tctagtgtcg gcacttctcg 5941 gagcctttga tactaggaac aggataatag aagttgaaaa tccgcaaaat cctacaactg 6001 ccgagacgct tgatgcgacg aggcgggtag atgatgcgac ggtggccatt agggccagta 6061 taagtaacct catgaatgag ttagttcgtg gcacgggaat gtacaatcaa gctctgttcg 6121 agagcgcgag tggactcacc tgggctacaa ctccttaaac atgatggcat aaataagttg 6181 gacgaacatt aaacgtccgt ggcgagtacg ataactcgta gtgtttttcc ctccacttaa 6241 atcgaagggt tgtcgttggg atggaacgca attaaataca tgtgtgacgt gtatttgcga 6301 acgacgtaat tatttttcag gggttcgaat cccccccgaa ccgcgggtag cggccca //