LOCUS AAGW02039820 8111 bp DNA linear MAM 31-AUG-2009 DEFINITION Oryctolagus cuniculus breed Thorbecke inbred cont2.39819, whole genome shotgun sequence. ACCESSION AAGW02039820 AAGW02000000 VERSION AAGW02039820.1 DBLINK BioProject: PRJNA12819 BioSample: SAMN02953624 KEYWORDS WGS. SOURCE Oryctolagus cuniculus (rabbit) ORGANISM Oryctolagus cuniculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae; Oryctolagus. REFERENCE 1 (bases 1 to 8111) AUTHORS Di Palma,F., Heiman,D., Young,S., Gnerre,S., Johnson,J., Lander,E.S. and Lindblad-Toh,K. CONSRTM The Genome Sequencing Platform, The Assembly Computation and Development Core Team TITLE Version 2 of The Genome Sequence of Oryctolagus cuniculus (European rabbit) JOURNAL Unpublished REFERENCE 2 (bases 1 to 8111) AUTHORS Lindblad-Toh,K., Chang,J.L., Gnerre,S., Clamp,M. and Lander,E.S. CONSRTM The Genome Sequencing Platform, The Genome Assembly Team TITLE Direct Submission JOURNAL Submitted (05-MAY-2005) Broad Institute of MIT and Harvard, 320 Charles Street, Cambridge, MA 02141, USA REFERENCE 3 (bases 1 to 8111) AUTHORS Di Palma,F., Heiman,D., Young,S., Gnerre,S., Johnson,J., Lander,E.S. and Lindblad-Toh,K. CONSRTM The Genome Sequencing Platform, The Assembly Computation and Development Core Team TITLE Direct Submission JOURNAL Submitted (03-AUG-2009) Broad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA 02142, USA COMMENT Assembly Name: OryCun2.0 Genome Coverage: 7.48X Sequencing Technology: ABI. FEATURES Location/Qualifiers source 1..8111 /organism="Oryctolagus cuniculus" /mol_type="genomic DNA" /db_xref="taxon:9986" /sex="female" /note="breed: Thorbecke inbred" BASE COUNT 1562 a 2466 c 2632 g 1451 t ORIGIN 1 tccgtccgcg gggcccagga ggcagaatgt gttaagggtt ccttttattt agtgaaacat 61 tcatctgtac gtgactgggc cgtgaagacg tcctgagtgt gcggggggtg ggggcggccg 121 ggggagggag gcgcgcgaga tgggcgctcc cgcccgcggc ccgcgccccc tcccccgggg 181 cctgcgcact cctcccacct cgcctcggcc tccaggcctc gctcccgcag ccccggccaa 241 tcgttcttcc aggccgcggc ccaagcccca acttgcccaa gagcggtggc tcggcggggc 301 gaggccgggg tgggaggggc agtcaggtga ccagagggtg gcgagggcag gggccgggcc 361 tggccgccct gccccgagtc ccggcccctc cggagcgccg ccgctgcagc ctccctgggg 421 gccgcgggcc cgggggggcg gggagggggc gtccgtgcga agccgcagtg aagggcgagg 481 tcttaagggg cccccccgtg agtgcagggg gtgccaaggc aaacggtggt gggcggtggt 541 ggggtcacag cggttctcct aagccttagg aaagccggcg cgccgcggga caggggctcc 601 tgggctggct gagatccctg ccttcggagt cacctcttct gggtccgaaa ctgtcggtag 661 agccactgga cgacgaaggg ccacaggagg aagaagagca gcgtgggagc cgagagcctg 721 aggggccaag ggcgagccct gggccgtggc ctctgctacc aagagggagg gagtcagggg 781 ccagcggaca ctcggcggca gccccccccc ccaccgccac ccccaggggc cgcgtccaga 841 actctgcagg cgactgtgag agcctgcccc cggctgcagg gctggaaggg aagccattcc 901 cggtgtgtcc ccggcatgtg ggactcccaa ctcctgtcca cctcctgccc cccagggcgg 961 tcccaggtgc caggagaggc agcaggggct gcgcgctctg ggccacaaag ccacgaccct 1021 cccggtaggc accgaggacc ctgtgtggta agggactgga gtgcacttct aacggggccc 1081 ctgggtctca gaggttcctt tttaagtgct cttctggtgg ctgactcccg cgctgggcag 1141 gccagggagg ggggaatgcg ggcttcttgt agccgccagc caggagcttc cagaggtggt 1201 ggtgtgccaa ggacacagac acacacccac atacacacac acccccacgc tggccacagt 1261 ggtgggcgtg agcctggtga tgaaccttca gaagcatgag tccatactgg cactcaaaaa 1321 aagggaatac tggaaacctg tcaccagcgt ggtggctttt aaatccactc cttactttaa 1381 aaatagataa ttgagaaaga actaagcact tatcctgtct ttccataagg cactcactgt 1441 atttcaggga aactcgacag aaaatggata gttcataaat gttaccgaaa taagagaatt 1501 taaaagccaa ctttttcttt tttttttttt ttttttgcaa tcattaaatc aattactgat 1561 tccgattaaa ggtaccaaaa ctgtcaaagg gccagcgttg gggagcaatg gattaaagcc 1621 gccgcctgcg atgccggcac cctgtatatt gaggagctgg tttgagtctt ttctgcccca 1681 cttccagtcc agctccttga tctgtctggg aaggcggtgg cgtttgaccc aagtacttgg 1741 gcccctgcca tgcacatggg agacccagag ggaatcccag gctcctggct tcaactgttg 1801 cagccatctg gggagtgcac cattggatgg gggatctcct tctcgctgtc tctccctttg 1861 cctctgtcaa gctgcctttc aaatatgttg ttgttgttgt tgtttaaatg gcagtgtcaa 1921 gcaggttgac aggaacagga aactgggtct tccctggctc ttatgatttc gaacggtggg 1981 agcagatcac ccctcattcg tgccagtggc ccaggctaca gtggctggtg gggcgccacc 2041 cagggcatgc aggtatctca cgcgccttcg tgggaagaat gtcacctctg ctgtgtctgg 2101 cccagctcag agcaggaggc aggagccgca ggaatggcat cagaccccac caggtggagc 2161 atgctagcgg acctggtcac tggccctcga gtcagggcgg ggcaagatca ggagagactg 2221 gcaccacgga ggagccaggg gtgctgtgtg agccggcacc ggcagagtgg cgggacgggc 2281 agcttcccga cacctggggg aatgcgcctt tggactgggt atttggtggt ttgaagggat 2341 taataattgt gggtgatgcc cacgtgtgag accccaagga agctcctggc tttggcctgg 2401 cccagcccca ggtgttgctg ctatttgggg agtgaaccag cagatggaag atctctctct 2461 ctctctccct ctctctgtaa ctttgccttt caaataaata aaccttaaaa aaaaaaaaaa 2521 aaaaacagta actgtgggtg atagaggtgc tgtgttggct agctaggggc gatgcaagcc 2581 caggtatttc agtggagcac ctgacgtcat gatgtgtctg atctgcttta aaatcagcat 2641 ttaaaactag caaatggctt aaaaaataat aagtgagcca gctccgggcg gggaagtggg 2701 gggcgtgttg aaatgttagc cactgcggat ctgacaacat ctctgccagc atggctcccg 2761 gccactgggt cagaggtccc cacagccagc ccactcctcc aggcttctca agaacaaacc 2821 cactcatgcg gatgggggga gacagactcg gggctccatc acctcatagc aatggtaata 2881 actacaggcc ccactggaga aagtcttctg cgtgccgggc aaagcggaag cacctgcggg 2941 ccttgggtct cccaggctgt gtgccctcag gctagttact cgacctctct gcgccttggt 3001 ttccccttgt acatcaagga gatgaggaat ctcatggggg actgggggaa taaacgggag 3061 agtgctaggg cctggcacac gggctccagg aatggcagct gctgtttggc aggggcatca 3121 cttctcggcc tttgagctgc gatcaagtgt ttggcaggag cccgggtata aggtcctcag 3181 acctaggaca ggacggaggg gctgggggat gcaagggctg gactgtaggg ggacaaaccc 3241 cgaatctggg aacagaagtc ctgcctggtg ggaccagcat gctggtgcag cgggttaggc 3301 cgccacttgg gatccccaca tctcatgtga gtacaggttc aagtcccggc tgctccactt 3361 ccgatccagc tccctgctaa tgcgcctggg aatgcagcag aggacggccc aagtgcctgg 3421 gcccctgcac ccatgtagga gacctgggtg aagttcctgg ctcctggctt tggcctggcc 3481 cagtcctggc tgttggctga catctgggga gtgaaccagc aagtggaaga ccccacctcc 3541 tctgtttctc ctctctctct atcactctgc ccttaataaa taaagaaatc ttaaaaaaaa 3601 aaaaaaaagg caggaggaca agagggacct cgagccgcgt cacagccctt ctgcctcctg 3661 gggggaggca gatggggtga gcagggaagg gggtacaggc acttcagacc ccctgacctg 3721 tggcctgcag cactgggcca cagcattctc ggggcagagg tgggcagatg tatacaacag 3781 tggcccacca gggagcccag aacagaggcg gagtcagtgc agctcccccg cttgcgcggt 3841 gagtggggaa ggggcactca cctgctcagg ggcctggggc gggctctcca ggctctgcag 3901 cctgccctgg acgtcccgca tgttctcctg cagggcttgc accgtcccca gcagccacgt 3961 gtccaactcc tggggcccca gcaggctgca ccccagccct tctgcggagc acagacccag 4021 ggaagggggc tcaggaggca gctccgaggc tgcccgggcc caggaagcag cagaggagag 4081 cagggtccct cgtaccaagt ccacccctgt gctgagtcat gggttgccgg ggtctgaatc 4141 ccagcacaac cccttcctgc ctgtgtgact taggacaaat cattcacttt gtcacccgaa 4201 agctgccatc tctcagacag ggctgcttgc ttacagggat aaagcaggtg acatttggga 4261 aagcgcgcct tagtggacct ggcacacagg aaggtgtcca agcagacagg gcggagactc 4321 ccagatggga ggcccagaga cacaggacga cgtccaaggc catgcagctg taggtgagag 4381 ctgggtagga ctccccctgc ccccagcacc tgcagagggt gcagagtccc aggtggcccc 4441 ggggcgaggc ccagggcagg gacgtagccc atgcaggcag tgtcaccatt tggcagccct 4501 tactgcaccc ggctgctcct ccagggcctg cactggactt ccacctctgc ccacagaggg 4561 cctggcgcac cagaacccca gagaaaagca gaggggtgaa aggtcgggca agagctcacc 4621 tttctctctg ggggtcacca ggctgtgcgt ggtggcgggc tcccctccag ccgcacccct 4681 ctgctctggc cagacctgct gagaggagtc acagatgcaa aggtgggggt ggagcgacca 4741 ggaaggggcc acaggacagg aggggtggtc tcaccagctc aggctccagc tgctccaggg 4801 aatcgcagaa aacctcagcg tccaggtccc ggggtggctg agcctctggg gaggggacgc 4861 ggcagatggg ttagtgacaa ggacacgggg cacaggcacc tgctcaggag acacatgaga 4921 cacggcccca gcaggctcag gtgggccctg tgggagccct gggacaggga ccccagcgcc 4981 tgaccctggg catgagatgc gaagggcgca gctggcaccc ggccttctcc cctcccggct 5041 cctgggtctg gtcctctccc tcctgcccac agcctaacct gggcttgggg gtgccagctc 5101 cttgaggggg cagggaggct ccaggacagt ccctgcacct ccatttagca cctgtgcttt 5161 ccaacctgtc aagacacagc acgtggaggt ggaggtgggg ctgggaagag gccggcacct 5221 cccagggaga gcagaagctg gggccctgct ggggtcctca cggggcctca cctgggccct 5281 ctgcctccag cccctctcca gccgagcagc cccctcgact acacccaaga ctgctcactc 5341 agcacctgca gggtcctggc cggggtctga cctgtgacct ttctcaggaa ggcttctggc 5401 ggctttggca tatcagggat cacttggtac aggggctcga agtaagcaaa catgtcctct 5461 gccacctcac ccaggggcac cgtgtcgatc acctgcgggc aggggtgcta tgggaaaggg 5521 gctggccctc ctgtcccccg ggggccgggt ccctccaccc cgccctgctg cctgccacca 5581 cctgcaccca ggcatggctg gcgggggcac aggaggtggt ggcccccaca gggttgtcag 5641 gtggaggcag tcggggccgg agaacctgcg gcccccctcc taccttctgt gccaccagct 5701 tcatctcggc gatgtaggca gacatggcct cctctctgct catcttgccc aggctgttcc 5761 aggcatccct ggggggcaaa gggcagtgag aaggccggcg ggcgctcagg cttacttgcc 5821 cgcaggtggg gagctcacca cttatatcgt ccgatggggt cccagaaccc aggccggggg 5881 accaggcagg gcccggtggt ggcctgcttg tagtagctgt agaatcgcag catttcttcg 5941 taggacggcc ggtaagagcc tgagcagagg ggaggaagtg ggccgtacag catcagcccc 6001 agctccgagg ggagaccacc cttggagaca gcagcgatgg ggaagggccc cacccaggga 6061 cacgagccag ttggccgaag ggacccccta gggcagcccc cggcagggac cggacggctt 6121 cagggctacg tcctcctggc agtgagaccc cggccatcgg gagcccccaa gcgggagagg 6181 cggcagcggg gcgcagcctt accgttcttg ggcaggttct gaatgacgct gaccgcagcc 6241 tggaactgtt tctggcagtc cggccccggg ctttcgttct cgatgcccat gctactgcga 6301 gccgcggggt cccactcgga gcggctgtgg gccccggcgg gagcaggcct cggagcccac 6361 cctggctccc acccacggct gcactttgta gaggggcaaa ctcagctgcc cgggggcccg 6421 agagacaccc gggacgtccg aagctgcagc tgagatgcct cttcccacct cagggcagcg 6481 tgggtggggc cagggtggcg agggtctcgg tgggtggaga ggcaggtggc aagggtcgca 6541 gcgccggaca gtgtccagac gcgccctctt cggggtacat caactcctgg acaggcgaac 6601 gcgcaagaca ggagtcaggg cggggcgtgc ggcctcccac cagacccccg cactcaggcc 6661 cggccggcac tcacccagcg gcgcccaccg cccgggctcc tacctgggtc ctctctcgcc 6721 accaacccgc ggcttccgac tgacctcagg gtccggccgg gtcgggatgg ggacgcggag 6781 cgagggggaa attttcagcc aatgagagag cccgtttcac attcctcttt tgtactgcaa 6841 ccactcagcg cggccctttc aagattatgc aaaaagcttc acagcgcctc tcccaatcag 6901 gcggggctaa tccacggata gaactcccca tcccgcgatg gtcacaggcg ggcggcagcg 6961 tcccctggtg gacaaagtga aggatggcgg agtccttgcg ccccctggtg gaaacccgcg 7021 tccctacgcc gaaactggcc ctgaggatcc gagccgttca gcccagctct tcaggttttt 7081 aaggggctgg ggagtcaggt gctgttggaa gatttaagag taaaccagga gaacggtcag 7141 ggaggttatt tctgaaggaa ggaacagcac ggtcaaaagt acaaaggcga aggcttgata 7201 ggaacaaaac tcaggacctc agcgcggagt ccccaagttg aggacatctg agcaccggtg 7261 gtgcgtggaa agcaggtggc acagctaggt cctttccccg agggttggcc agcggcggcc 7321 gtgtgctccc ggctctccgc cccgggctcg ggcacccgct gcaggcagcg cagccaccgg 7381 acaccccctc cccccgcgcc gctctcagac tcggggctcc actgcagcca gggcaccccc 7441 gacgcggtca ccagggcccg cgcgccgtcg ctctcctgcg gtgagccacg gacacctcca 7501 cagcgtccgg cggctcggca gccaacctgc ccgagcctcg aaccccagaa ccagcggccg 7561 ggtctgcagg cttggcgcca cctcgccctc cgcggaccag tccgcgtgga gattacccac 7621 ggagggggcg gcagccggcg tggcgggctg ggggtggggt aggggaaccc tatgacgtca 7681 ctgccagcgt gttcctgccc accccgtccc gcgtggctcc gctccgggtt cttcggggat 7741 cccacgtccg aggtcgagcc gactgcacac gcgccccttg tctggctccc gccaaggagg 7801 gggcgacggt gccacagggc attctccccc gcaatgggga cccgggcccc tcctggggcc 7861 cggagcccag gggcacttgg ggaggcgcaa aggcggacgc aggggcgcac ccgcgctcga 7921 ccaggggtcc ccgccgcccg gtgcggccct cgcccagttc cttgataact gcttcctgcc 7981 caggttatat tacggtttgc ttttattgtc tatgcaaatg agttcgtgat tcatctctta 8041 aggttgctag attagaatta ttgtttttgt tgaggacgtt aaaactttat tatttttttt 8101 tttaaaaaca a //