LOCUS AAGW02037883 8273 bp DNA linear MAM 31-AUG-2009 DEFINITION Oryctolagus cuniculus breed Thorbecke inbred cont2.37882, whole genome shotgun sequence. ACCESSION AAGW02037883 AAGW02000000 VERSION AAGW02037883.1 DBLINK BioProject: PRJNA12819 BioSample: SAMN02953624 KEYWORDS WGS. SOURCE Oryctolagus cuniculus (rabbit) ORGANISM Oryctolagus cuniculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae; Oryctolagus. REFERENCE 1 (bases 1 to 8273) AUTHORS Di Palma,F., Heiman,D., Young,S., Gnerre,S., Johnson,J., Lander,E.S. and Lindblad-Toh,K. CONSRTM The Genome Sequencing Platform, The Assembly Computation and Development Core Team TITLE Version 2 of The Genome Sequence of Oryctolagus cuniculus (European rabbit) JOURNAL Unpublished REFERENCE 2 (bases 1 to 8273) AUTHORS Lindblad-Toh,K., Chang,J.L., Gnerre,S., Clamp,M. and Lander,E.S. CONSRTM The Genome Sequencing Platform, The Genome Assembly Team TITLE Direct Submission JOURNAL Submitted (05-MAY-2005) Broad Institute of MIT and Harvard, 320 Charles Street, Cambridge, MA 02141, USA REFERENCE 3 (bases 1 to 8273) AUTHORS Di Palma,F., Heiman,D., Young,S., Gnerre,S., Johnson,J., Lander,E.S. and Lindblad-Toh,K. CONSRTM The Genome Sequencing Platform, The Assembly Computation and Development Core Team TITLE Direct Submission JOURNAL Submitted (03-AUG-2009) Broad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA 02142, USA COMMENT Assembly Name: OryCun2.0 Genome Coverage: 7.48X Sequencing Technology: ABI. FEATURES Location/Qualifiers source 1..8273 /organism="Oryctolagus cuniculus" /mol_type="genomic DNA" /db_xref="taxon:9986" /sex="female" /note="breed: Thorbecke inbred" BASE COUNT 1859 a 1723 c 1676 g 3015 t ORIGIN 1 gaaaggcagt ggaagatggc ccaagtgctt agggccctgc accccatggg gaagaccagg 61 aggaagcacc tggctcctgg cttcggatca acatagtgtg caggccacag cacgctggcc 121 acagcggcca ttggggattg aaccaatgga aaagtaagcc tttctgtctg tctctctctc 181 tcactgtcca ctttacctgt aaaaaacaat aaaaataaaa taaataaaaa tgtgtgttta 241 aatcctttgc ccatttctta actgggttgt ttcattgttg ttgagtttct tgagttcctg 301 tatatattct gtatatatat taatctttca tcagtttaat agtttgcata tattttctct 361 cagtctctca gttgcctctt cattttgctg agtgtttctt ttgcagtgca gaagcttctc 421 aatttgatgt aatcccattt gtcaattttg gctttgattg cctgtgcctc taagggtctt 481 ttccaagaag tctttgcctg tgctaatgtc ttgcaggatt tccccaatgt tttctaataa 541 attgatggta ttgggtcata gatttaggtc tttgatccat tttgagttga tttttattta 601 ggatgtaagg taggggtctt gtttcatatt tctgcgtgca gagatccagt tttcccagca 661 ccatgtgttg gagagactgt ccttgctcca gggattggtt ttagcttctt tgtcgaagat 721 aaattgtaga tgcgggggtt gatttctggt gtttctgttc tgttccattg gcctctccat 781 ctgtttctat gccagtacta ggctattttg attataactg ccctgtagta tgtcttgaag 841 tctgatattg tgatgcctcc agctttgttt atgttgtata agattgcttt agctattcag 901 gtctcctgtg tttccatatg attttcagca tcattttttt tctatatctg agatgaatgt 961 ctttggtatt ttgattggta ttgcattgaa tctgtaaatt gcttttggtt atatggacat 1021 tttggtgata ttgattcttc caatccatga acatgaagat tttttccatt ttttttgtgt 1081 gtgtcttctt ctgtttcttc ctttaatgtt ttataatttt catcatagtg atctttgacg 1141 tgcttggtta actatattcc aaggtattta atttttttac agctattgtg aatgggattg 1201 atattaaaat aagttatttc tcagccatgg cattgtctgt gtatataaag gctgttgatt 1261 tttctttgtt gattttatac cctgctattt taacaaactc tcatgagttt cattggcctc 1321 ttagtggagt cttttggatc ccctatatat agaatcatgt catctgtaaa tagggagagt 1381 ttgacttcct ccttcccaat ttgtatccct ttgatttctt tttcttacct aatggctctg 1441 gctaaaactt ctaagactat attgaatagc agtgatgaga gtgggcattg ttgtctggtt 1501 ccagatctca gtggaaatgc ttcctacttt tctccattca ataggatact ggtcatgggt 1561 ttgtcataaa ttcccttgat aatgttgagg aatgttcttc tatgcccaat ttgcttaaag 1621 ttgtcatcat gaaagggtgt tgcattttat aaactgcttt ctctgtatct attaataatc 1681 atatggtttt tgttcttcag tttgttaatg tgaaggatca cattgattga tttgcaaatg 1741 ttgaaccatc cctgtacttg gtctgggtaa atgatctttt agatgtgttg ttgtgttcaa 1801 ttggctagtg ttttgttgag catttttgtg tctattttca tcaaggaaat tagtctgtag 1861 ttctctttct ctgttgtatc ttttttaggt ctaggagtta aagtgatgct ggcttcatag 1921 aaggagtttg gaggattgcc tccctttctt ttgtcttgaa tagcttgaga agaattggag 1981 ttagttcttt aaatgtctgg tagaattcag cagtgaaggc atctggtcct gggcttttct 2041 ttgttttgag ggtatttatt actgattcaa tttccatctt ggttattggt ctgtttgggt 2101 gttctgtgtc ttcatggctc aatttagata ggttgagtat gtccaggagt ctatccattt 2161 cttctgggtt tcctgatttg ttggcataca gctctttata gtaatttctg atgactcttt 2221 tatttctctg gtatctattg ttacatttcc tttttcatct ctaattttat tgatctgaga 2281 gtgttctccc tgcttttgtt tgtttatttg tttggttagt tgaccaattt tattgatttt 2341 ttcaaaaaac cagctctttg tttctctggt cctttgtatt tttttatttt gctttgtttt 2401 gtttcaattt catttcttct ctaattttaa ttatttcttt tctcctacta attttgggtt 2461 tcgtttgctg ttgttgttct aggtccttga gatgcattga tagctcattt atttggtgcc 2521 tttccaattt cttgatgtag gcaccaattg ctataaactt tcctcttaac attgcttttt 2581 ctgtattcct taagatttga aacattgtat tgtcattgtc atttgtttcc agaaattttt 2641 ttattttttc tatgacccac tgttcattca ggagtatgtt gttcagtctc catgtgtcta 2701 catatgtcct agagattctt gatttgttga tttccatctt catagaagat gcatggaatg 2761 ctattgattt ttttggattt gttttatagc ctagcatgtg gtcaacccca gagaaagtac 2821 catgcattgg tgagaagaat gtgtattctg caactgcagg atgaaaagtt atgtagatat 2881 ctgttaggtc catttggtct atgtcagtta actctgtttc cttgcccagt ttctgtctgg 2941 tttttctgtc cagtgcagaa agtgggctat tgaagtccag cattaccatt gtattggagt 3001 ctgtgtctct ctttagatcc attaacgtta gttaatccgt gcagctcatc tgtatctttg 3061 aactggagac tttaggccat ttacatgcaa ggtgactatt gataagtaac aacttggatc 3121 tgtagttttt ccataaatat tcctattgtt tactttggat ttcatttgta cttttactgg 3181 aagattttct gccttcacct tctttcatag tgatgaccat gtgtctatgt ttctgtgtgt 3241 agcacatcct taagtatctt ttttaagtct ggacaggtgg tgacaaattc tttcaatttc 3301 tgtttgttac agaaagtctt tatttcacct tcatatgaga actttgcagg gtatagaatc 3361 tgatttgaca gtttttttct ctcaagactt aggatacatc ttgccattgt ctcctagcct 3421 gtagggtttc tgatgagaag tccactgtga gtctaattgg agatcctctg aaagtaatct 3481 ggcgtttctg ttgtgcacat ttttgaatct ttatgtttta ctgtggagag tttgactaca 3541 atatatcatg gtgaagtctt ttctgatcat gtctattagg agttctatgt gcttgctgta 3601 cttgaatgtc ccttcctttc tccaaaccag ggaagttttc tgctattatt tcactaaaaa 3661 ggccttctaa tccattctct ctttccacgc cttcaggagc tcctaagacc tgtatgttag 3721 gtcatttgtt agtattccat aaacctccaa gactattttt tcagttttct aatttcttct 3781 tttttttttt ttctttttgg tctgactaca aaatttccag agctttgtct tctaactcag 3841 atattcttta ttctgcctca ccaagtctgt tattaaggct ctcctccaca ttttttgttc 3901 gatgtgttaa attcttcatt tccaatattt cactttattt tgctttaaaa tctcaatttc 3961 atgggaaaat tttcattcat ttcatgtatg gatttttttt aatttgttga tttgcttctg 4021 attacttctg agtattccta tgatcatttc ttcaatctat gcatcatgtt gtgttccttt 4081 gggagcatca cgttgccttc cttattactt cttgaatttc tgtgtttatt tttaggcatt 4141 tctggaggta cttgttgggg tttttttttc cccctgtgat ggcttttatc tttgaactag 4201 gcctttgtga cttaatggag cgtccactct ttcagtgaat acccagaggt gtgtgctggg 4261 tgttgcctgg gagccctgtt cagtgctcca gggtaaggag agtgtccaag gtaacaccca 4321 agttgggcgt ggtaaatctc tttttttttt ccctttggtc aaaggggagg gtttgatcag 4381 ctctgttggc atagtcttat gctcacctcc tctcctccaa ggagaccagt acccaggctc 4441 tagcccccag tggttgcagt attcctctgc actgccacaa gaaccacaca gaggacccat 4501 gcagtcctca gtgtgagcac agatcccaca gcaacgtctc ttaccaggca atcagggagc 4561 cctaactgtg tggagccgcc cacagtgacc actcagagac ccagccacac cctgatcctc 4621 ccatgcagct accgtgtttt catagtccgt tccaacacac caggctccta cagtcactag 4681 cgcccagctg tctgtcaggt cttccaggca gactcaggtg tctcctctcc attggttgct 4741 gggctcacag acacaagctg gcgcagctgt tatgtatgtc caaaatggcg cctgccctat 4801 ctcagctagt tataggacgc tggtgccagg tagtcagtga gagagaaaca tgcttccccc 4861 accttttttc ccctctaggt tggcaggtac actgtcctcc ctctgggctc caagctagac 4921 tcacaccagg ctcttcccac aactttattg ccagtgactt gggctgctgt aatctccaaa 4981 gctggtgcca aggctctcgg ctgctggagt cctcatctgt gcatgtccac accctccatg 5041 tagatccaca gtgtgcctgg aaactcccat ggcatttcct ctgcagtttt ctccccagct 5101 cttccctgag attgcacgct ctccactgtt gttgttgttg ttgtttgttt gtttgtttgt 5161 ttgttttaac tatcttcccc taaactagag cagtaaacta actccctatt ctgctatctt 5221 ggaatcctta atccaggata tttgtgacaa acaagttagt cttttgtccc atgggacaat 5281 taagactaaa acacagccga aatcttgctc tgtctcccct ttttatgaac actttattgt 5341 gtgagacaga ttatgacgca gtgtgtaagt gtctttagtc ctgtgttccc atgtggttcc 5401 ctttggccca cactggttgc cctgactggg agggactaag tgatccccag gtcccttcag 5461 catcgtgcag gctgcctgtc agttccctga tatgataatg gctcatccga gtttttctgt 5521 caggtgttaa ccttgctttg cctgtgtcta aattctccca gtgcattctt tcttattccc 5581 tagatgctga caacaagtcc atgggacgat agttagcata gaagttagca tattcatacc 5641 agtaggcttc ctatggaaag cttatcacaa ccagaaaaat ttcttttgtt ggctaaatgc 5701 cttgcataga ctttaaagaa tttttgagaa atgttctttt tggggaaaaa tgtgaagaaa 5761 tataaatagc taaattcttt ccaataatca aatgttataa caatcactat atttttgttg 5821 cactctatca ttcacaaagt gttagttatc ttttagcctt gtgaaataga tattattaag 5881 cccatcctat ggatgaaaag aattgagact cagaggagtt aggttacttg cataagatct 5941 tcagtatatg gcataattag aattaatcct caggccctct agttccacat atatgatatt 6001 ttacctgctg ttctcagagt ggggttttga tgggttagaa ctttattttt gtaatcaaca 6061 cagtcatttt aaagaaaact gccatgaatt attaccatta ttttataaaa tgcagtattt 6121 taatgtcaaa aagtacaaag atggtctcag aataaaggtc aggccggcgc cgcggctcac 6181 taggctaatc ctccgtctta cggcgccagc acactgggtt ctagtcccag ttggggcgcc 6241 ggattctgtc ccagttgctc ctcttccagg ccagctctct gctgtggcca gggagtgcag 6301 tggaggatgg cccaagtgtt tgggccctgc accccatggg agatcaggag aagcacctgg 6361 ctcctgcttt cagatcattg cgtgcgcgcc gcagtgcgcc gccgcagtgc gccgcgcggc 6421 agcattggag gtgaacaacg gcaaaggaag acctttctct ctgtctctct ctctctcact 6481 gtccactctg cctgtcaaaa aataaataaa taaataaatg tcagtctttg tcaaaaatac 6541 acatttggca accttagaac aaaaatgcat ttgtgtatat gagagaaaga gtgtgtgtgt 6601 gtgtgactgc tttatatgca tgtccttttc agactcctcg tagtgctaca ggttggtgta 6661 cattctgtca gtgattagca tgaaaatgac ccatctagaa ttcctcccca gaaaacctta 6721 gctgtggaag gaggtcatag gttttatagt tatatcctgg ctccaccatc tactagctgt 6781 tgaatcttgg gcaagttaca taatctttct gagccttctt tatcttgttt cttttttctt 6841 tttaagatta tttgaaagag tgacggagag agaaagagag atctatcttc catcttctgg 6901 ttcactctcc aaatggctac aacagctagg actgggccag tccaaagcca atagccagga 6961 actccatctg ggtctcctat cttagtggca ggggcccagg taacttggac agttttttgc 7021 tgctttccca ggcacttcca atccagggag ttggactgaa agtgaaacag ctggcactcg 7081 aaccggcact catataggat gctggctctg caggtggtgg cttaacctac tttgcccaaa 7141 tgctggtccc tctttacctc attttgttga aaataaacca aaaacaaaaa gcggcagaat 7201 ggttttgagt agttaaataa aataacttag gaaagcattt ataattaatg cctagtacac 7261 aattggaacc tagtaaaggc tcacttgtac aaacataggc atgaccctgt tgcgtaagtc 7321 tggtggctgc tgcaaagcca gcgtccatag tatctcctta gtaagcctct gttgagtaaa 7381 gggagccctc gcatgagctg ttgcagaaaa gagtccctgt tcgctttcta ggttatcttc 7441 ctggtgttct cggttttccc ttgctctact gacccctcta aaaggaggag gggtgccacc 7501 gtgcagctgg aaattcagag ttattgtctg ctcagcactg aatcccttcc ctgccgtctc 7561 agtctgagtg attgcttcgg cgccttttgt gctttctgat gattggcttg aaatgctatt 7621 ccactgtata tgcaaatctg cagctttact gtctggcttc aggcagatca ctggctttta 7681 aagagaccac cagaactgaa gacagagttt cctaaggccc tgcattggca gagccctaat 7741 ttgtatccgt gtttgtctaa ttcctcagta tactctattt gtgagaacat attttaagga 7801 tatattctct ctatggtgcc attattaaag gtacaatgtg ccctgcttgt cttcagaaac 7861 cacatcaggt acttgagcct gttgatgtaa gtcatgcaag actttctgga agagtgtttt 7921 gagtcagact tggaaggaag gcctctcctg tgctagctgt ctcttcggat gcatgagctc 7981 tacctctgtt tactgtcagt ccgctttgtt tggaagctgg cactcacctt ggcatgctct 8041 gctcgctgaa actcttcttg aaacctctct tcaagactgt tagtgctgtt tcttacccag 8101 cacagcttcc ctgctcgcct tctgacgtct cctccctcgc agtcgtggct ccagcaagtc 8161 cctgactggc ttctgcttcc attctcagcg tggtgacctc cctcattctc tccctggata 8221 accccttctg ttttcagctg atgccagtat tttctaatat tgagctacag tgt //