LOCUS AK065248 1114 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013002J02, full insert
sequence.
ACCESSION AK065248
VERSION AK065248.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1114)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001)
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1114
/clone="J013002J02"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 110..874
/db_xref="Osa1:LOC_Os07g04840"
/db_xref="RAP-DB:Os07g0141400"
/note="(RAP Annotation release2) Similar to 23 kDa
polypeptide of photosystem II"
/note="(Rice Genome Annotation Project) oxygen-evolving
enhancer protein 2, chloroplast precursor, putative,
expressed"
/note="mapping to R07-TIGRv4S1-000088R (Chr.7: short
arm=2135178, long arm=2136635, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG89433.1"
/translation="MASTSCFLHQSTARVAARVASPSPATRTHLLVCRAQKQDDADVS
RRAALALLAGATAAVGVKVAPAAAAYGEAANVFGKPKTNTEFIAYSGEGFKLLIPSKW
NPSKEREFPGQVLRYEDNFDANSNVSVIINPTTKKTITEFGSPEEFLAQVDFLLGKQA
YSGKTDSEGGFESDAVATANILESSAPVVGGKQYYSVTVLTRTADGDEGGKHQLITAT
VNDGKLYICKAQAGDKRWFKGARKFVESAASSFSVA"
BASE COUNT 230 a 363 c 326 g 195 t
ORIGIN
1 ggctatcccg tcgccacctc gccccatcac cctctccctc caccacacta caccccgctc
61 cactctcagg caggcaatca gcggcgaggc accagcccac cggccggcaa tggcgtccac
121 ctcctgcttc ctccaccagt ccacggcccg cgtcgccgcg cgcgtcgcct ccccgtcccc
181 ggcgacacgg acccacctcc tcgtctgccg cgcccagaag caggacgacg ccgacgtctc
241 ccgccgcgcg gcgctcgcgc tgctggccgg agcgacggcg gcggtggggg tgaaggtggc
301 gcccgccgcc gcggcctacg gcgaggcggc gaacgtgttc gggaagccca agacgaacac
361 ggagttcatc gcctacagcg gcgaggggtt caagctgctg atcccgtcca agtggaaccc
421 cagcaaggag cgcgagttcc ccggacaggt cctccgctac gaggacaact tcgacgccaa
481 cagcaacgtc tccgtcataa tcaaccccac caccaagaag accatcaccg agttcggctc
541 ccccgaggag ttcctcgccc aggtcgactt cttgcttggc aagcaggcct actccggcaa
601 gacagattcc gagggtgggt ttgagtcgga cgcggtggcg acggcgaaca tcctggagag
661 ctcggcgccg gtggtgggag ggaagcagta ctacagcgta acggtgctga cgaggacggc
721 ggacggcgac gagggcggca agcaccagct gatcacggcc accgtcaacg acggcaagct
781 gtacatctgc aaggcgcagg ccggcgacaa gaggtggttc aagggcgcca ggaagttcgt
841 cgagagcgca gccagctcct tcagcgtcgc atgatcgtcg aaatctctat ctcagcttct
901 ctttaatccc tagcgaatca aaatcaaatc aatcgagttc gttgctcaga gagatgcagt
961 gcacgcatgt gtgtgtgcgt gtgtgtttct ttgattgtac atgagaatta agaacaagtt
1021 aaggagagag gtcgatccat cgatttcccc tgcatgcaag gattgatttt ctgtgatccg
1081 tgtgttaagt aatcctagta attaatcatg ttcc
//