LOCUS WQZ30542.1 765 aa PRT BCT 29-DEC-2023
DEFINITION Helicobacter pylori hydantoinase B/oxoprolinase family
protein protein.
ACCESSION CP079244-663
PROTEIN_ID WQZ30542.1
SOURCE Helicobacter pylori
ORGANISM Helicobacter pylori
Bacteria; Campylobacterota; Epsilonproteobacteria;
Campylobacterales; Helicobacteraceae; Helicobacter.
REFERENCE 1 (bases 1 to 1570870)
AUTHORS Thorell,K., Munoz-Ramirez,Z.Y., Wang,D., Sandoval-Motta,S., Boscolo
Agostini,R., Ghirotto,S., Torres,R.C., Falush,D., Camargo,M.C. and
Rabkin,C.S.
CONSRTM HpGP Research Network
TITLE The Helicobacter pylori Genome Project: insights into H. pylori
population structure from analysis of a worldwide collection of
complete genomes
JOURNAL Nat Commun 14 (1), 8184 (2023)
PUBMED 38081806
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 1570870)
AUTHORS Camargo,M.C. and Rabkin,C.S.
TITLE Direct Submission
JOURNAL Submitted (15-JUL-2021) IIB, National Cancer Institute, 9609
Medical Center Dr., Rm. 6E110, Bethesda, MD 20892, USA
COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Method :: HGAP v. 4
Assembly Name :: HpGP-TWN-021
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 2661x
Sequencing Technology :: PacBio Sequel II
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 07/16/2021 08:12:09
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 5.2
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 1,497
CDSs (total) :: 1,452
Genes (coding) :: 1,391
CDSs (with protein) :: 1,391
Genes (RNA) :: 45
rRNAs :: 2, 2, 2 (5S, 16S, 23S)
complete rRNAs :: 2, 2, 2 (5S, 16S, 23S)
tRNAs :: 36
ncRNAs :: 3
Pseudo Genes (total) :: 61
CDSs (without protein) :: 61
Pseudo Genes (ambiguous residues) :: 0 of 61
Pseudo Genes (frameshifted) :: 44 of 61
Pseudo Genes (incomplete) :: 11 of 61
Pseudo Genes (internal stop) :: 18 of 61
Pseudo Genes (multiple problems) :: 12 of 61
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Helicobacter pylori"
/mol_type="genomic DNA"
/strain="HpGP-TWN-021"
/isolation_source="Biopsy"
/host="Homo sapiens"
/db_xref="taxon:210"
/geo_loc_name="Taiwan"
/lat_lon="23.30 N 121.00 E"
/collected_by="Maria Camargo and Charles Rabkins"
protein /locus_tag="E5P95_03385"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_003015730.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
BEGIN
1 MANLLKNGKT LKQARDEILA RTEKTGHYNG LKKLEFKERD PIGYEKMFSK LRGGIVHARE
61 TAKRIAASPI VEQEGELCFT LYNAVGDSVL TSTGIIIHVG TMGSAIKYMV ENNWEDNPGI
121 NDKDIFTNND CAIGNVHPCD IMTLVPIFHD EKLIGWVGGV THVIDTGSVT PGSMSTGQVQ
181 RFGDGYMITC RKTGANDESF KDWLHESQRS VRTPKYWILD ERTRIAGCHM IRDLVMEVIK
241 EDGIDSYMRF IDEVIEEGRR GLISRIKSMT IPGKYRKVAF VDVPYAHKDI GVCSEFAKLD
301 TIMHSPVEIT INKDATWKLD FEGASRWGWH SFNCNQVSFT SGIWVMMTQT LIPTSRINDG
361 AYFATQFKLK KGTWMNPDDR RTGHAYAWHF LVSGWSALWR GLSQAYYSRG YLEEVNSGNA
421 NTSNWLQGGG INQDGEIHAV NSFETSSCGT GACAIKDGLN HAAAIWNPEG DMGDVEIWEM
481 AEPLLYLGRN VKANTGGYGK YRGGNGFETL RMVWGAHDWT MFFMGNGYMN SDWGMMGGYP
541 AASGYRFEAH NTDLENRIKN NASLPLGGDF NPTDRDYEKH ISHASQVKRD KQCITTENCF
601 DNYDLYLNYI KGGPGFGDPI ERDLNAILED LNSKQLLPEY AYKVYGAVVS QNKDGIWVGD
661 EAKTKARRKE ILENRKARSI PVKQWMEQER NAILEKEASK QVKHMYATSF DLSPKFLSDF
721 KTFWNLPKNW TMKEDELGVF TYGSKYRMDL SKLPDVRTVV LVDEK
//