LOCUS WQZ30541.1 713 aa PRT BCT 29-DEC-2023
DEFINITION Helicobacter pylori hydantoinase/oxoprolinase family protein
protein.
ACCESSION CP079244-662
PROTEIN_ID WQZ30541.1
SOURCE Helicobacter pylori
ORGANISM Helicobacter pylori
Bacteria; Campylobacterota; Epsilonproteobacteria;
Campylobacterales; Helicobacteraceae; Helicobacter.
REFERENCE 1 (bases 1 to 1570870)
AUTHORS Thorell,K., Munoz-Ramirez,Z.Y., Wang,D., Sandoval-Motta,S., Boscolo
Agostini,R., Ghirotto,S., Torres,R.C., Falush,D., Camargo,M.C. and
Rabkin,C.S.
CONSRTM HpGP Research Network
TITLE The Helicobacter pylori Genome Project: insights into H. pylori
population structure from analysis of a worldwide collection of
complete genomes
JOURNAL Nat Commun 14 (1), 8184 (2023)
PUBMED 38081806
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 1570870)
AUTHORS Camargo,M.C. and Rabkin,C.S.
TITLE Direct Submission
JOURNAL Submitted (15-JUL-2021) IIB, National Cancer Institute, 9609
Medical Center Dr., Rm. 6E110, Bethesda, MD 20892, USA
COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Method :: HGAP v. 4
Assembly Name :: HpGP-TWN-021
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 2661x
Sequencing Technology :: PacBio Sequel II
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 07/16/2021 08:12:09
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 5.2
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 1,497
CDSs (total) :: 1,452
Genes (coding) :: 1,391
CDSs (with protein) :: 1,391
Genes (RNA) :: 45
rRNAs :: 2, 2, 2 (5S, 16S, 23S)
complete rRNAs :: 2, 2, 2 (5S, 16S, 23S)
tRNAs :: 36
ncRNAs :: 3
Pseudo Genes (total) :: 61
CDSs (without protein) :: 61
Pseudo Genes (ambiguous residues) :: 0 of 61
Pseudo Genes (frameshifted) :: 44 of 61
Pseudo Genes (incomplete) :: 11 of 61
Pseudo Genes (internal stop) :: 18 of 61
Pseudo Genes (multiple problems) :: 12 of 61
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Helicobacter pylori"
/mol_type="genomic DNA"
/strain="HpGP-TWN-021"
/isolation_source="Biopsy"
/host="Homo sapiens"
/db_xref="taxon:210"
/geo_loc_name="Taiwan"
/lat_lon="23.30 N 121.00 E"
/collected_by="Maria Camargo and Charles Rabkins"
protein /locus_tag="E5P95_03380"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_001944431.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
BEGIN
1 MKDARVQVMG IDAGGTMTDT FFVKENGSFV VGKAQSNPED ESLAIYNSSQ DALSHWKSDV
61 NKVYPELVTC VYSGTAMLNR VVQRRGMEVG LICNKGFEQM HSMGRALQSY LGYALEERLH
121 INTHKYDDPL IPLKRIRGVT ERTDVKGQVV IPVRQEEVKV AVKELLEAGA KAIVICLLQS
181 HKNAESERIV RDIALEEIEK LGKNVPVFAS VDYYPQRKES HRMNTTILEA YAAEPSRQTL
241 SKVSNRFKEH GAKFDLRVMA THGGTISWKA KELARTIVSG PIGGVIGSKL LGETLGYDNI
301 ACSDIGGTSF DMALIVKSSF NIASDPDMAR LVLSLPLVAM DSVGAGAGSF VRIDPHSRSV
361 KLGPDSAGYR VGTCWKDSGL DTVSVTDCHI VLGYLNPDNF LGGLIKLDVD RAKKHIKEQI
421 ADPLGISVED AAAGVIELLD LELKEYLRSN ISAKGYSPSD FVCFSYGGAG PVHTYGYTEG
481 LGFKDVVVPA WAAGFSAFGC ACADFEYRYD KSVDIAIPQY SSDESKVEAC KIIQDAWDEL
541 TLKVIEEFKI NGFSQKDVIL RPGYRMQYMG QLNDLEITSP VSKAASVADW EEIVKEYEKT
601 YARVYSESAC SPELGFSVTG VIMRGVVATQ KPVIPVEKEH GATPPKEAKI GVRKFYRHKK
661 WVDADVWRME KLLPGNEVIG PAIVESDATT FVIPKGFATR LDKHRLFHLK EIK
//