LOCUS WQZ30533.1 767 aa PRT BCT 29-DEC-2023
DEFINITION Helicobacter pylori TonB-dependent receptor family protein protein.
ACCESSION CP079244-654
PROTEIN_ID WQZ30533.1
SOURCE Helicobacter pylori
ORGANISM Helicobacter pylori
Bacteria; Campylobacterota; Epsilonproteobacteria;
Campylobacterales; Helicobacteraceae; Helicobacter.
REFERENCE 1 (bases 1 to 1570870)
AUTHORS Thorell,K., Munoz-Ramirez,Z.Y., Wang,D., Sandoval-Motta,S., Boscolo
Agostini,R., Ghirotto,S., Torres,R.C., Falush,D., Camargo,M.C. and
Rabkin,C.S.
CONSRTM HpGP Research Network
TITLE The Helicobacter pylori Genome Project: insights into H. pylori
population structure from analysis of a worldwide collection of
complete genomes
JOURNAL Nat Commun 14 (1), 8184 (2023)
PUBMED 38081806
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 1570870)
AUTHORS Camargo,M.C. and Rabkin,C.S.
TITLE Direct Submission
JOURNAL Submitted (15-JUL-2021) IIB, National Cancer Institute, 9609
Medical Center Dr., Rm. 6E110, Bethesda, MD 20892, USA
COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Method :: HGAP v. 4
Assembly Name :: HpGP-TWN-021
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 2661x
Sequencing Technology :: PacBio Sequel II
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 07/16/2021 08:12:09
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 5.2
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 1,497
CDSs (total) :: 1,452
Genes (coding) :: 1,391
CDSs (with protein) :: 1,391
Genes (RNA) :: 45
rRNAs :: 2, 2, 2 (5S, 16S, 23S)
complete rRNAs :: 2, 2, 2 (5S, 16S, 23S)
tRNAs :: 36
ncRNAs :: 3
Pseudo Genes (total) :: 61
CDSs (without protein) :: 61
Pseudo Genes (ambiguous residues) :: 0 of 61
Pseudo Genes (frameshifted) :: 44 of 61
Pseudo Genes (incomplete) :: 11 of 61
Pseudo Genes (internal stop) :: 18 of 61
Pseudo Genes (multiple problems) :: 12 of 61
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Helicobacter pylori"
/mol_type="genomic DNA"
/strain="HpGP-TWN-021"
/isolation_source="Biopsy"
/host="Homo sapiens"
/db_xref="taxon:210"
/geo_loc_name="Taiwan"
/lat_lon="23.30 N 121.00 E"
/collected_by="Maria Camargo and Charles Rabkins"
protein /locus_tag="E5P95_03340"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000822109.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
BEGIN
1 MKRILVSLVV LSHSAHAVKT HNLERVEASG VANDKEAPLS WRSKEVRNYM GSRTVISNKQ
61 LTKSANQSIE EALQNVPGVH IRNATGIGAV PSFSVRGFGG GSSGHSNTAM VLVNGIPIYV
121 APYVDISIPI FPVTFQSVDR ISVTKGGESV RYGPNVFGGV INVITKGIPT KWESQVSERA
181 TFWGKSENGG FFNQNSKNLD KSLANNMLFD TYLRTGGMMN KHFGIQAQAN WLKGQGFRYN
241 SPTNIQNYML DSLYQINDNN KITAFFQYYN YFMADPGTLG IDAYNQNRFQ NNRPNNNKSG
301 RAKRWGAVYQ NFFGDTDKIG GDFTFSYYGH DMSRDFQFDS NFLNVNTNPK LGPVYTDQNY
361 AGFFIFDHLR RYIMNAFEPN LNLVVNTSKV KQTFNVGMRF MTIDMYFRLD QSTCEKTDIF
421 NGVCRMPPFV LSKTPSNNQN LFNNYTAVWL SDKIELFDSK LVITPGIRYT FLNYTNKEPE
481 KHDFSVWNTT KKRQNEWSPG LNIGYKPMEN WIWYANYRRS FIPPQHTMLG ISRTNYNQIF
541 NEIEVGQRYS YKNLLSFNTN YFVIFANRYY AGGYSPQPIN ARSQGVELEL YYAPIRGLQF
601 HVAYTYIDAR ITSNADDIAY YFTGIVNKPF DIKGKRLPYV SPNQFIFDMM YTYKHTTFGI
661 SSYFYSRAYS SMLNQAKSQT VCLPLNPKYT GGLEYGCNSV GLLPLYFVLN VQVSSVLWQS
721 GRHKITGSLQ INNLFNMKYY FRGIGTSPTG REPAPGRSIT AYLNYEF
//