LOCUS       WQZ30520.1              1614 aa    PRT              BCT 29-DEC-2023
DEFINITION  Helicobacter pylori DEAD/DEAH box helicase protein.
ACCESSION   CP079244-640
PROTEIN_ID  WQZ30520.1
SOURCE      Helicobacter pylori
  ORGANISM  Helicobacter pylori
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Helicobacteraceae; Helicobacter.
REFERENCE   1  (bases 1 to 1570870)
  AUTHORS   Thorell,K., Munoz-Ramirez,Z.Y., Wang,D., Sandoval-Motta,S., Boscolo
            Agostini,R., Ghirotto,S., Torres,R.C., Falush,D., Camargo,M.C. and
            Rabkin,C.S.
  CONSRTM   HpGP Research Network
  TITLE     The Helicobacter pylori Genome Project: insights into H. pylori
            population structure from analysis of a worldwide collection of
            complete genomes
  JOURNAL   Nat Commun 14 (1), 8184 (2023)
   PUBMED   38081806
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1570870)
  AUTHORS   Camargo,M.C. and Rabkin,C.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUL-2021) IIB, National Cancer Institute, 9609
            Medical Center Dr., Rm. 6E110, Bethesda, MD 20892, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: HGAP v. 4
            Assembly Name          :: HpGP-TWN-021
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 2661x
            Sequencing Technology  :: PacBio Sequel II
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 07/16/2021 08:12:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 5.2
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,497
            CDSs (total)                      :: 1,452
            Genes (coding)                    :: 1,391
            CDSs (with protein)               :: 1,391
            Genes (RNA)                       :: 45
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 44 of 61
            Pseudo Genes (incomplete)         :: 11 of 61
            Pseudo Genes (internal stop)      :: 18 of 61
            Pseudo Genes (multiple problems)  :: 12 of 61
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Helicobacter pylori"
                     /mol_type="genomic DNA"
                     /strain="HpGP-TWN-021"
                     /isolation_source="Biopsy"
                     /host="Homo sapiens"
                     /db_xref="taxon:210"
                     /geo_loc_name="Taiwan"
                     /lat_lon="23.30 N 121.00 E"
                     /collected_by="Maria Camargo and Charles Rabkins"
     protein         /locus_tag="E5P95_03270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001290156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MSEISTYKLI KEKLQAIPNQ RLKGSWFEKV SKRFLKEHDS ADEYESIDLW SDWKLRGNEG
       61 DRGIDMVITT ASKEYIAVQC KFHQDSVSLN DLSTFLLKLQ SGVGEVGFKK GIIISTSNLS
      121 SNALEEIEQI RKSKGIDIVE ISEEDFIYSQ IDWEKFDPTQ TQGELPLCDK KKPRPHQIEA
      181 IKATKEYFSN PKNTRGKLIM ACGTGKTYTS LKIMEALEPK ITLFLAPSIA LLSQTFREYA
      241 QEKSDPFYAS IVCSDDKVGK GKKNKNDDDA DDINFSELPN KPSTRPEDIL SVCEKVQKEN
      301 KRFIIFSTYQ SALRIKEAQE VGLGEIDLII CDEAHRTVGA MYSSNERDDK NAFTLCHSDG
      361 NIKAKKRLYM TATPKVYSES SKARAKESDN AIYSMDDEGI FGEEIYTLNF TRAIALDLLT
      421 DYKVMILAVR KENLSGVTNS VNEKISRLEA KGTKLDKKLI NNEFVCKIIG THKGLAKQDL
      481 IALDDENKKD HNLQNKNDTT PSQRAISFCK SINTSKRIKD SFETIMECYN EELKKKSFKN
      541 LTISIDHIDG TMNCKVRLDK LEELNAFKPN TCKVLSNARC LSEGVDVPAL DSIVFFDGKS
      601 AMVDIIQAVG RVMRKAKHKK RGYIILPIAL EESEIQNLDE AVNNTNFKNI WKVIKALRSH
      661 DPSLVDEATF REKIKIFGSD DNNNDETNQD DEEPTKDKTD KTDKTEQDPK QAQKTLFDAI
      721 LLQDLANAVY NVMPTKLGDR NYWENFTKKT GNIARTLNNR LKDIFEKNPE FFHGFLDSLK
      781 GNIHSNIKED EALDMITSHI ITKPIFDAIF GDNIKNPISK ALDKMVEKLS TLGLQGETKD
      841 LKNLYESVKT EAMHAKSQKS QQELIKNLYN TFFKVAFRKQ SEKLGIVYTP IEVVDFILRA
      901 TNGILKKHFN TDFNDKNITI FDPFTGTGSF IARLLSKEND LISDEALKEK FLNNLFAFDI
      961 VLLAYYIALI NITQAAQSRD SSLKNFKNIA LTDSLDYLEE KTNKGALPLY EDLEENKEIK
     1021 STIEKQNIRV IIGNPPYSAG AKSENDNNQN LSHPKLEKRV YEKYGQNSTA KVGATTRDTL
     1081 IQSIYMASEL LKDRGVLGFV VNGGFIDSKS GDGFRKCVAK DFAHLYVLNL RGNARTSGET
     1141 RKKEGDGIFD SGSRATIAII FFVKDTSVKN SMIHYYDIGD YLKREEKLNR LAHFTDLDKI
     1201 PFETIIPNNK GDWINQREDG FEKLIPLKRD KNSKSVFDIN SGGVASGRDS WVYNFSKDAL
     1261 MLSVQKCIDA YNADLKRFNT HFREAFKQRT KGVKSGQLYK QLNDKEITTD KTKIAWTGGL
     1321 KNHLIKNKNL QESHKDRIRL ALYRPFNKQW LYWDKDWINR QREFSKIFPD KDAYNVVINT
     1381 GVGNGKNFSA LVSDCISSCD LIMHNQAYPL YYYDDLGNRH YAISGYALNL FRRHYEDSSI
     1441 AEEEIFYYIY AILHHKGYLE KYKNSLTKEE PRIALSKDFK ELSVLGKELG ELHLNYESEE
     1501 MHISVEYKTL MNAEEKGYYD VETMKKIGDR IHYNNHIAIT KIPKKAFDYA LNGKSAIDWV
     1561 IERYKKTRDK ESLIENNPND YKGGKYVFEL LCRIIKLSEK SVDLIEKISI KRFE
//