LOCUS WQZ30447.1 979 aa PRT BCT 29-DEC-2023
DEFINITION Helicobacter pylori AsmA-like C-terminal domain-containing
protein protein.
ACCESSION CP079244-560
PROTEIN_ID WQZ30447.1
SOURCE Helicobacter pylori
ORGANISM Helicobacter pylori
Bacteria; Campylobacterota; Epsilonproteobacteria;
Campylobacterales; Helicobacteraceae; Helicobacter.
REFERENCE 1 (bases 1 to 1570870)
AUTHORS Thorell,K., Munoz-Ramirez,Z.Y., Wang,D., Sandoval-Motta,S., Boscolo
Agostini,R., Ghirotto,S., Torres,R.C., Falush,D., Camargo,M.C. and
Rabkin,C.S.
CONSRTM HpGP Research Network
TITLE The Helicobacter pylori Genome Project: insights into H. pylori
population structure from analysis of a worldwide collection of
complete genomes
JOURNAL Nat Commun 14 (1), 8184 (2023)
PUBMED 38081806
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 1570870)
AUTHORS Camargo,M.C. and Rabkin,C.S.
TITLE Direct Submission
JOURNAL Submitted (15-JUL-2021) IIB, National Cancer Institute, 9609
Medical Center Dr., Rm. 6E110, Bethesda, MD 20892, USA
COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Method :: HGAP v. 4
Assembly Name :: HpGP-TWN-021
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 2661x
Sequencing Technology :: PacBio Sequel II
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 07/16/2021 08:12:09
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 5.2
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 1,497
CDSs (total) :: 1,452
Genes (coding) :: 1,391
CDSs (with protein) :: 1,391
Genes (RNA) :: 45
rRNAs :: 2, 2, 2 (5S, 16S, 23S)
complete rRNAs :: 2, 2, 2 (5S, 16S, 23S)
tRNAs :: 36
ncRNAs :: 3
Pseudo Genes (total) :: 61
CDSs (without protein) :: 61
Pseudo Genes (ambiguous residues) :: 0 of 61
Pseudo Genes (frameshifted) :: 44 of 61
Pseudo Genes (incomplete) :: 11 of 61
Pseudo Genes (internal stop) :: 18 of 61
Pseudo Genes (multiple problems) :: 12 of 61
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Helicobacter pylori"
/mol_type="genomic DNA"
/strain="HpGP-TWN-021"
/isolation_source="Biopsy"
/host="Homo sapiens"
/db_xref="taxon:210"
/geo_loc_name="Taiwan"
/lat_lon="23.30 N 121.00 E"
/collected_by="Maria Camargo and Charles Rabkins"
protein /locus_tag="E5P95_02865"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_001964416.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
BEGIN
1 MNKRKHVSKK VFNVIILFVA VFTLLVVIHK TLSNGIHIQN LKIGKLGISE LYLKLNNKLS
61 LEVERVDLSA FFHQKPTKKR LEVSDLIKNI RYGIWAVSYF EKLKVKEIIL DDKNKANIFF
121 DGNKYELEFP GVKGEFSLED DKNIKLKIIN LLFKDIKVQV DGNAHYSPKA RKMAFNLIVK
181 PLIEPSAAIY LQGLTDLKTI ELKINTSPMK SLAFLKPLFQ RQSQKNLKTW IFDKIQFASF
241 KIDNASIKAN FTPSEFIPSL LENSVVKATL IKPSVVFNDG LSPIKMDKTE LIFKNKQLLI
301 QPQKITYETM ELNGSYATFS NLLEAPKLEI FLKTTPNYYG DSIKDLLSAY KVVLPLDKIS
361 TPSSADLKLT LQFLKNTAPL FSVQGNVNLQ EGTLSLYNIP LYTQNASVSL DITQEYQYIY
421 IETTHTRYEN MLDLDAKIAL DLNKKTLSLD SLVHKIQFNT NNNINMRSYG LNNDPDNPQP
481 TKFSLDLKSL HSIIQEGENS EAFRRKIIDT IKAQSEDKFT KDVFYATEDT LKNLSLNFDF
541 SNPDYMQWSV PQLLLEGEFK DNAYVFRIKD LKKIKPYSPI MKYFALEDGS LEVSTSDFVN
601 IDFFAKDLKI TLPIYHSNGK QFNSLSLFGS INKDEISVYT PSKSISIKVK GDQKDITLNN
661 IDLSIDDFLD SKMPAIAGLF SKERKEKPSS KEIQDEDIFI STKQRYEKAH KIIPISTRIH
721 AKDVVLIYKK MPFPLENLDI VAQDDRVKID GNYKNGMIMA DLVHGALYLK AHNFSGDYIN
781 TVLQKDFVEG GLFTLIGTLE DQVFNGELKF QNTSLKNFAL MQNMINLINT IPSLIVFRNP
841 HLGANGYQIK KGSVVFGITK EYLGLEKIDL IGKTLDIAGN GIIELDKNKL DLNLEVSTIK
901 ALSNVLSKIP IVGYLILGKG GKITTNVNVK GTLDKPKTQV TLASDIIQAP FKILHRIFTP
961 IDIIVDEVKK NIESKRKLK
//