LOCUS WQZ30391.1 1796 aa PRT BCT 29-DEC-2023
DEFINITION Helicobacter pylori type IV secretion system apparatus
protein CagY protein.
ACCESSION CP079244-501
PROTEIN_ID WQZ30391.1
SOURCE Helicobacter pylori
ORGANISM Helicobacter pylori
Bacteria; Campylobacterota; Epsilonproteobacteria;
Campylobacterales; Helicobacteraceae; Helicobacter.
REFERENCE 1 (bases 1 to 1570870)
AUTHORS Thorell,K., Munoz-Ramirez,Z.Y., Wang,D., Sandoval-Motta,S., Boscolo
Agostini,R., Ghirotto,S., Torres,R.C., Falush,D., Camargo,M.C. and
Rabkin,C.S.
CONSRTM HpGP Research Network
TITLE The Helicobacter pylori Genome Project: insights into H. pylori
population structure from analysis of a worldwide collection of
complete genomes
JOURNAL Nat Commun 14 (1), 8184 (2023)
PUBMED 38081806
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 1570870)
AUTHORS Camargo,M.C. and Rabkin,C.S.
TITLE Direct Submission
JOURNAL Submitted (15-JUL-2021) IIB, National Cancer Institute, 9609
Medical Center Dr., Rm. 6E110, Bethesda, MD 20892, USA
COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Method :: HGAP v. 4
Assembly Name :: HpGP-TWN-021
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 2661x
Sequencing Technology :: PacBio Sequel II
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 07/16/2021 08:12:09
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 5.2
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 1,497
CDSs (total) :: 1,452
Genes (coding) :: 1,391
CDSs (with protein) :: 1,391
Genes (RNA) :: 45
rRNAs :: 2, 2, 2 (5S, 16S, 23S)
complete rRNAs :: 2, 2, 2 (5S, 16S, 23S)
tRNAs :: 36
ncRNAs :: 3
Pseudo Genes (total) :: 61
CDSs (without protein) :: 61
Pseudo Genes (ambiguous residues) :: 0 of 61
Pseudo Genes (frameshifted) :: 44 of 61
Pseudo Genes (incomplete) :: 11 of 61
Pseudo Genes (internal stop) :: 18 of 61
Pseudo Genes (multiple problems) :: 12 of 61
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Helicobacter pylori"
/mol_type="genomic DNA"
/strain="HpGP-TWN-021"
/isolation_source="Biopsy"
/host="Homo sapiens"
/db_xref="taxon:210"
/geo_loc_name="Taiwan"
/lat_lon="23.30 N 121.00 E"
/collected_by="Maria Camargo and Charles Rabkins"
protein /gene="cagY"
/locus_tag="E5P95_02570"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_015642692.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
BEGIN
1 MNEENDKFET SKKTQQHSPQ DLSNEEATEA NHFEDSSKES KESSDHHLDN PTETKTNFDE
61 YESEETQTQM DSGGNETSES SNGSLADKLF KKARKLVDNK KPFTQQKNLD EEIQEPNEED
121 DQENNGYQEE TQTDLIDDET SKKTQQHSPQ DLSNEEITEA NHFEDSSKES KESSDHLDNP
181 TETKTNFDEY ESEEITNDSN DQEIIKGSKK KYIIGGIVVA VLIVIILFSR SIFHYFIPLE
241 DKSSRFSKDR NLYVNDEIQI RQEYNRLLKE RNEKGNMIDK NLFFNDDPNR TLYNYLNIAE
301 IEDKNPLRAF YECISNGGNY EECLKLIKDK KLQDQMKKTL EAYNDCIKNA KTEEERIKCL
361 DLIKDENLKK SLLNQQKVQV ALDCLKNAKT DEERNECLKL INDPEIREKF RKELGLQKEL
421 QEYKDCIKNA KTEAEKNECL KGLSKEAIER LKQQALDCLK NAKTDEERNE CLKNIPQDLQ
481 KELLADMSVK AYKDCVSKAR NEKEKKECEK LLTPEAKKKL EQQVLDCLKN AKTDEERKKC
541 LKDLPKDLQS DILAKESLKA YKDCVSQAKT EDEKKECEKL LTPEAKKLLE EEAKESVKAY
601 LDCVSQAKTE AEKKECEKLL TPEAKKKLEE AKKSVKAYLD CVSQAKNEAE KKECEKLLTP
661 EAKKLLEQQA LDCLKSAKTD EERKKCLKDL PKDLQKKVLA KESVKAYLDC VSQAKTEAEK
721 KECEKLLTPE AKKLLEEAKE SLKAYKDCVS RARNEKEKKE CEKLLTPEAK KLLEEEAKES
781 VKAYLDCVSQ AKTEAEKKEC EKLLTPEAKK KLEEAKKSVK AYLDCVSQAK TEAEKKECEK
841 LLTPEAKKLL EQQALDCLKS AKTEAEKKRC VKDLPKDLQK KVLAKESLKA YKDCVSRARN
901 EKEKKECEKL LTPEAKKLLE EAKESLKAYK DCVSRARNEK EKKECEKLLT PEAKKLLEEA
961 KESLKAYKDC VSRARNEKEK QECEKLLTPE AKNLLEQQAL DCLKNAKTES EKKRCVKDLP
1021 KDLQKKVLAK ESVKAYLDCV SRARNEKEKK ECEKLLTPEA KKLLEEAKES LKAYKDCLSQ
1081 ARNEEERRAC EKLLTPEARK LLEQEVKKSV KAYLDCVSRA RNEKEKQECE KLLTPEARKF
1141 LAKQVLSCLE KARNEEERKA CLKNIPKDLQ KNVLAKESLK AYKDCLSQAR NEEERRACEK
1201 LLTPEARKLL EQEVKKSVKA YLDCVSRARN EKEKQECEKL LTPEARKFLA KELQQKDKAI
1261 KDCLKNADPN DRAAIMKCLD GLSDEEKLKY LQEAREKAVL DCLKTARTDE EKRKCQNLYS
1321 DLIQEIQNKR TQSKQNQLSK TERLHQASEC LDNLDDPTDQ EAIEQCLEGL SDSERALILG
1381 IKRQADEVDL IYSDLRNRKT FDNMAAKGYP LLPMDFKNGG DIATINATNV DADKIASDNP
1441 IYASIEPDIT KQYETEKTIK DKNLEAKLAK ALGGNKKDDD KEKSKKSTAE ARVESNKIDK
1501 DVAETAKNIS EIALKNKKEK SGEFVDENGN PIDDKKKTET QDETSPVKQA FIGKSDPTFV
1561 LAQYTPIEIT LTSKVDATLT GIVSGVVAKD VWNMNGTMIL LDKGTKVYGN YQSVKGGTPI
1621 MTRLMIVFTK AITPDGVIIP LANAQAAGML GEAGVDGYVN NHFMKRIGFA VIASVVNSFL
1681 QTAPIIALDK LIGLGKGRSE RTPEFNYALG QAINGSMQSS AQMSNQILGQ LMNIPPSFYK
1741 NEGDSIKILT MDDIDFSGVY DVKITNKSVV DEIIKQSTKT LSREHEEITT SPKGGN
//