LOCUS       WQZ30344.1               578 aa    PRT              BCT 29-DEC-2023
DEFINITION  Helicobacter pylori M3 family oligoendopeptidase protein.
ACCESSION   CP079244-446
PROTEIN_ID  WQZ30344.1
SOURCE      Helicobacter pylori
  ORGANISM  Helicobacter pylori
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Helicobacteraceae; Helicobacter.
REFERENCE   1  (bases 1 to 1570870)
  AUTHORS   Thorell,K., Munoz-Ramirez,Z.Y., Wang,D., Sandoval-Motta,S., Boscolo
            Agostini,R., Ghirotto,S., Torres,R.C., Falush,D., Camargo,M.C. and
            Rabkin,C.S.
  CONSRTM   HpGP Research Network
  TITLE     The Helicobacter pylori Genome Project: insights into H. pylori
            population structure from analysis of a worldwide collection of
            complete genomes
  JOURNAL   Nat Commun 14 (1), 8184 (2023)
   PUBMED   38081806
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1570870)
  AUTHORS   Camargo,M.C. and Rabkin,C.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUL-2021) IIB, National Cancer Institute, 9609
            Medical Center Dr., Rm. 6E110, Bethesda, MD 20892, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: HGAP v. 4
            Assembly Name          :: HpGP-TWN-021
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 2661x
            Sequencing Technology  :: PacBio Sequel II
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 07/16/2021 08:12:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 5.2
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,497
            CDSs (total)                      :: 1,452
            Genes (coding)                    :: 1,391
            CDSs (with protein)               :: 1,391
            Genes (RNA)                       :: 45
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 44 of 61
            Pseudo Genes (incomplete)         :: 11 of 61
            Pseudo Genes (internal stop)      :: 18 of 61
            Pseudo Genes (multiple problems)  :: 12 of 61
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Helicobacter pylori"
                     /mol_type="genomic DNA"
                     /strain="HpGP-TWN-021"
                     /isolation_source="Biopsy"
                     /host="Homo sapiens"
                     /db_xref="taxon:210"
                     /geo_loc_name="Taiwan"
                     /lat_lon="23.30 N 121.00 E"
                     /collected_by="Maria Camargo and Charles Rabkins"
     protein         /locus_tag="E5P95_02295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000662853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MKEQEWDLSA LFENKESAEE FLKTLQTEAQ EFESAYQNNL KNLDAIGFAN ALKHYEDLSE
       61 KISRVMTYAQ LLFAKNTKEA KFYSQCEMAC TNIQQHLLFF EIEFKNLDAK KQLAFIKKCK
      121 NHAFYLNNLI EKKKHTLNLD EEKIALALSP VGVGAFSRLF DEHFSSLKIP FEEQNLSEEE
      181 ILALLHNPKR KIRKKSQKAF SKALEKSRPL LTYILNMVRK DLLIETKLRK YDKKESFRHI
      241 DNQISQESVD SMIEIVNANF SLVHRYYHQK AQILGHKLKD YDRYAPLSDE NTTMTYSQAL
      301 EEVLNTLKAF SPEFHKIASK AIKEGWVDSH PKDFKQGGAF SHGGVPSAHP YVLLNYTGNR
      361 RDAFTIAHEF GHMIHQELSK KQGVLNMDTP LTTAETASVF SEMLFFEHLK KGLKSDELLF
      421 MLAGKLEDIF STLFRQVVMT NFERRIHEID EELDTKDFDR IWFEENQRMF EKSVKLTKNY
      481 HLWWSYIPHF IHSPFYCYAY SYGQLLTLAL YGLYKKSDAK EFVKTYTEFL SLGGSKSPKE
      541 LVSMFGFDID SKEFWEIGMQ EVCHLLEEFE RLLACKKN
//