LOCUS WQZ30278.1 741 aa PRT BCT 29-DEC-2023
DEFINITION Helicobacter pylori copper-translocating P-type ATPase
CopA protein.
ACCESSION CP079244-376
PROTEIN_ID WQZ30278.1
SOURCE Helicobacter pylori
ORGANISM Helicobacter pylori
Bacteria; Campylobacterota; Epsilonproteobacteria;
Campylobacterales; Helicobacteraceae; Helicobacter.
REFERENCE 1 (bases 1 to 1570870)
AUTHORS Thorell,K., Munoz-Ramirez,Z.Y., Wang,D., Sandoval-Motta,S., Boscolo
Agostini,R., Ghirotto,S., Torres,R.C., Falush,D., Camargo,M.C. and
Rabkin,C.S.
CONSRTM HpGP Research Network
TITLE The Helicobacter pylori Genome Project: insights into H. pylori
population structure from analysis of a worldwide collection of
complete genomes
JOURNAL Nat Commun 14 (1), 8184 (2023)
PUBMED 38081806
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 1570870)
AUTHORS Camargo,M.C. and Rabkin,C.S.
TITLE Direct Submission
JOURNAL Submitted (15-JUL-2021) IIB, National Cancer Institute, 9609
Medical Center Dr., Rm. 6E110, Bethesda, MD 20892, USA
COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Method :: HGAP v. 4
Assembly Name :: HpGP-TWN-021
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 2661x
Sequencing Technology :: PacBio Sequel II
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 07/16/2021 08:12:09
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 5.2
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 1,497
CDSs (total) :: 1,452
Genes (coding) :: 1,391
CDSs (with protein) :: 1,391
Genes (RNA) :: 45
rRNAs :: 2, 2, 2 (5S, 16S, 23S)
complete rRNAs :: 2, 2, 2 (5S, 16S, 23S)
tRNAs :: 36
ncRNAs :: 3
Pseudo Genes (total) :: 61
CDSs (without protein) :: 61
Pseudo Genes (ambiguous residues) :: 0 of 61
Pseudo Genes (frameshifted) :: 44 of 61
Pseudo Genes (incomplete) :: 11 of 61
Pseudo Genes (internal stop) :: 18 of 61
Pseudo Genes (multiple problems) :: 12 of 61
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Helicobacter pylori"
/mol_type="genomic DNA"
/strain="HpGP-TWN-021"
/isolation_source="Biopsy"
/host="Homo sapiens"
/db_xref="taxon:210"
/geo_loc_name="Taiwan"
/lat_lon="23.30 N 121.00 E"
/collected_by="Maria Camargo and Charles Rabkins"
protein /gene="copA"
/locus_tag="E5P95_01935"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000664921.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
BEGIN
1 MKESFYIEGM TCTACSSGIE RSLGRKSFVK KIEVSLLNKS ANIEFDENQT NLDEIFKLIE
61 KLGYSPKKTL AKEKKGFFSP NVKLALAVVF TLFVVYLSMG AMLSPSLLPK SLLTIDNHSN
121 FLNACLQLIG ALIVMHLGRD FYIQGFKALW HRQPNMSSLI AIGTSAALIS SLWPLYLVYT
181 NQWSYGHYYF ESVCVILMFV MVGKRIENVS KDKALDAMQA LMKNAPKTAL KMQNNQQIEV
241 LVDSIVVGDI LKVLPGSAIA VDGEIIEGEG ELDESMLSGE ALPVYKKVGD KVFSGTFNSH
301 TSFLMKATQN NKNSTLSQII EMIHNAQSSK AEISRLADKV SSVFVPSVIA IAILAFVVWL
361 IIAPKPDFWW NFKIALEVFV SVLVISCPCA LGLATPMSIL VANQKASSLG LFFKDAKSLE
421 KARLVNTIVF DKTGTLTNGK PVVKSVHSKI ELLELLSLAG SIEKSSEHVI AKGIVEYAKE
481 RNAPLKEMSE VKVKTGFGIS AKTDYQGAKE IIKVGNSEFF NPINTLEIKE SGILVFVGRA
541 ISKKEDELLG VFVLEDLPKK GVKEHIAQIK NLGINTLLLS GDNRENVKKC ALELGIDGYI
601 SNAKPQDKLN KIKELKEKGQ IVMMVGDGLN DAPSLAMSDV AVVMAKGSDV SVQAADIVSF
661 NNDIKSVYSA IQLSQAVIKN IKENLFWAFC YNSVFIPLAC GVLYKANIML SPAIAGLAMS
721 LSSVSVVLNS QRLRNFKIKD H
//