LOCUS WQZ30168.1 481 aa PRT BCT 29-DEC-2023
DEFINITION Helicobacter pylori Hop family outer membrane protein HopF protein.
ACCESSION CP079244-252
PROTEIN_ID WQZ30168.1
SOURCE Helicobacter pylori
ORGANISM Helicobacter pylori
Bacteria; Campylobacterota; Epsilonproteobacteria;
Campylobacterales; Helicobacteraceae; Helicobacter.
REFERENCE 1 (bases 1 to 1570870)
AUTHORS Thorell,K., Munoz-Ramirez,Z.Y., Wang,D., Sandoval-Motta,S., Boscolo
Agostini,R., Ghirotto,S., Torres,R.C., Falush,D., Camargo,M.C. and
Rabkin,C.S.
CONSRTM HpGP Research Network
TITLE The Helicobacter pylori Genome Project: insights into H. pylori
population structure from analysis of a worldwide collection of
complete genomes
JOURNAL Nat Commun 14 (1), 8184 (2023)
PUBMED 38081806
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 1570870)
AUTHORS Camargo,M.C. and Rabkin,C.S.
TITLE Direct Submission
JOURNAL Submitted (15-JUL-2021) IIB, National Cancer Institute, 9609
Medical Center Dr., Rm. 6E110, Bethesda, MD 20892, USA
COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Method :: HGAP v. 4
Assembly Name :: HpGP-TWN-021
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 2661x
Sequencing Technology :: PacBio Sequel II
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 07/16/2021 08:12:09
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 5.2
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 1,497
CDSs (total) :: 1,452
Genes (coding) :: 1,391
CDSs (with protein) :: 1,391
Genes (RNA) :: 45
rRNAs :: 2, 2, 2 (5S, 16S, 23S)
complete rRNAs :: 2, 2, 2 (5S, 16S, 23S)
tRNAs :: 36
ncRNAs :: 3
Pseudo Genes (total) :: 61
CDSs (without protein) :: 61
Pseudo Genes (ambiguous residues) :: 0 of 61
Pseudo Genes (frameshifted) :: 44 of 61
Pseudo Genes (incomplete) :: 11 of 61
Pseudo Genes (internal stop) :: 18 of 61
Pseudo Genes (multiple problems) :: 12 of 61
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Helicobacter pylori"
/mol_type="genomic DNA"
/strain="HpGP-TWN-021"
/isolation_source="Biopsy"
/host="Homo sapiens"
/db_xref="taxon:210"
/geo_loc_name="Taiwan"
/lat_lon="23.30 N 121.00 E"
/collected_by="Maria Camargo and Charles Rabkins"
protein /gene="hopF"
/locus_tag="E5P95_01310"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000788704.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
BEGIN
1 MKNHSFKKTI ALSLLASMSL CNAEEDGAFF VIDYQTSLAR QELKNPGFTQ AQELKQLIRD
61 GAVRLQTSAI PLSYYLDILG NKTKTLLSES VKNNAQASQQ NGQSHQALVN LEQSLEILGK
121 LLDLSQQYAS QNIIKPLVVD VGKEQIGITD SMLSVAQNIV LALGQVDLSK IQQNNNNQQL
181 YENIMKVMLL GVGGTNGAYN GVSVGDIATG MQNFSSQTGL IGANSTVSEI NALIKSGISL
241 DRETLGLGSF IEKNICSNAS SCFSGSQLVY KKGLDRVIGI INTTLNQFES SASSLYKISY
301 IPNLFSLRDY QSASMNGFGA KMGYKQFFTH KKNIGLRYYG FLDYGYANFG DTNLKVGANL
361 VTYGVGTDFL YNFFERSRRR ERTAIGLFFG AQIAGQTWST NVTNLLSGQR PDVKSSSFQF
421 LFDLGLRTNF AKTHFNKHKL DQGIEFGVKI PVIAHKYFAT QGSSASYMRN FSFYVGYSVG
481 F
//