LOCUS WQZ30050.1 812 aa PRT BCT 29-DEC-2023
DEFINITION Helicobacter pylori pyruvate, water dikinase protein.
ACCESSION CP079244-124
PROTEIN_ID WQZ30050.1
SOURCE Helicobacter pylori
ORGANISM Helicobacter pylori
Bacteria; Campylobacterota; Epsilonproteobacteria;
Campylobacterales; Helicobacteraceae; Helicobacter.
REFERENCE 1 (bases 1 to 1570870)
AUTHORS Thorell,K., Munoz-Ramirez,Z.Y., Wang,D., Sandoval-Motta,S., Boscolo
Agostini,R., Ghirotto,S., Torres,R.C., Falush,D., Camargo,M.C. and
Rabkin,C.S.
CONSRTM HpGP Research Network
TITLE The Helicobacter pylori Genome Project: insights into H. pylori
population structure from analysis of a worldwide collection of
complete genomes
JOURNAL Nat Commun 14 (1), 8184 (2023)
PUBMED 38081806
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 1570870)
AUTHORS Camargo,M.C. and Rabkin,C.S.
TITLE Direct Submission
JOURNAL Submitted (15-JUL-2021) IIB, National Cancer Institute, 9609
Medical Center Dr., Rm. 6E110, Bethesda, MD 20892, USA
COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Method :: HGAP v. 4
Assembly Name :: HpGP-TWN-021
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 2661x
Sequencing Technology :: PacBio Sequel II
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 07/16/2021 08:12:09
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 5.2
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 1,497
CDSs (total) :: 1,452
Genes (coding) :: 1,391
CDSs (with protein) :: 1,391
Genes (RNA) :: 45
rRNAs :: 2, 2, 2 (5S, 16S, 23S)
complete rRNAs :: 2, 2, 2 (5S, 16S, 23S)
tRNAs :: 36
ncRNAs :: 3
Pseudo Genes (total) :: 61
CDSs (without protein) :: 61
Pseudo Genes (ambiguous residues) :: 0 of 61
Pseudo Genes (frameshifted) :: 44 of 61
Pseudo Genes (incomplete) :: 11 of 61
Pseudo Genes (internal stop) :: 18 of 61
Pseudo Genes (multiple problems) :: 12 of 61
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Helicobacter pylori"
/mol_type="genomic DNA"
/strain="HpGP-TWN-021"
/isolation_source="Biopsy"
/host="Homo sapiens"
/db_xref="taxon:210"
/geo_loc_name="Taiwan"
/lat_lon="23.30 N 121.00 E"
/collected_by="Maria Camargo and Charles Rabkins"
protein /gene="ppsA"
/locus_tag="E5P95_00660"
/EC_number="2.7.9.2"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_015643265.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
BEGIN
1 MRYIKFFKEL NNKNVNLVGG KNASIGEMFQ ELVPIGIKVP DGFAITSEAY WYLLEQGGAK
61 QKIIELLENV DATEIDVLKI RSKQIRELIF GTPFPSDLRD EIFQAYEILS QQYHMKEADV
121 AVRSSATAED LPDASFAGQQ DTYLNIKGKT ELIHYIKSCL ASLFTDRAIS YRASRGFDHL
181 KVALSVGVQK MVRADKGSAG VMFSIDTETG FKDAVFITSA WGLGENVVGG TINPDEFYVF
241 KPTLEQNKRP IIKRQLGNKT QKMVYAPRGS EHPTRNIKTT KKEWQSFSLS DEDVLILAKY
301 AIEIEKHYSK EAKQYRPMDI EWAKDGDSGE IFIVQARPET VQSQKTKEES QVFEKFKFKN
361 PNEKKEIILQ GRAIGSKIGS GKVRIINDLE HMNSFKEGEI LVTDNTDPDW EPCMKKASAV
421 ITNRGGRTCH AAIVAREIGV PAIVGVSGAT DSLYTGMEIT VSCAEGEEGY VYAGIYEHEI
481 ERVELSNMQE TQTKIYINIG NPEKAFGFSQ LPNHGVGLAR MEMIILNQIK AHPLALVDLH
541 HKKSVKEKNE IENLMAGYAN PKDFFVKKIA EGIGMISAAF YPKPVIVRTS DFKSNEYMRM
601 LGGSSYEPNE ENPMLGYRGA SRYYSESYNE AFSWECEALA LVREEMGLTN MKVMIPFLRT
661 IEEGKKVLEI LRKNNLESGK NGLEIYIMCE LPVNVILADD FLSLFDGFSI GSNDLTQLTL
721 GVDRDSELVS HVFDERNEAM LKMFKKAIEA CKRHNKYCGI CGQAPSDYPE VTEFLVKEGI
781 TSISLNPDSV IPTWNAVAKL EKELKDHGLT AH
//