LOCUS       WQZ29997.1              1185 aa    PRT              BCT 29-DEC-2023
DEFINITION  Helicobacter pylori proline dehydrogenase family protein protein.
ACCESSION   CP079244-64
PROTEIN_ID  WQZ29997.1
SOURCE      Helicobacter pylori
  ORGANISM  Helicobacter pylori
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Helicobacteraceae; Helicobacter.
REFERENCE   1  (bases 1 to 1570870)
  AUTHORS   Thorell,K., Munoz-Ramirez,Z.Y., Wang,D., Sandoval-Motta,S., Boscolo
            Agostini,R., Ghirotto,S., Torres,R.C., Falush,D., Camargo,M.C. and
            Rabkin,C.S.
  CONSRTM   HpGP Research Network
  TITLE     The Helicobacter pylori Genome Project: insights into H. pylori
            population structure from analysis of a worldwide collection of
            complete genomes
  JOURNAL   Nat Commun 14 (1), 8184 (2023)
   PUBMED   38081806
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1570870)
  AUTHORS   Camargo,M.C. and Rabkin,C.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUL-2021) IIB, National Cancer Institute, 9609
            Medical Center Dr., Rm. 6E110, Bethesda, MD 20892, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: HGAP v. 4
            Assembly Name          :: HpGP-TWN-021
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 2661x
            Sequencing Technology  :: PacBio Sequel II
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 07/16/2021 08:12:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 5.2
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,497
            CDSs (total)                      :: 1,452
            Genes (coding)                    :: 1,391
            CDSs (with protein)               :: 1,391
            Genes (RNA)                       :: 45
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 44 of 61
            Pseudo Genes (incomplete)         :: 11 of 61
            Pseudo Genes (internal stop)      :: 18 of 61
            Pseudo Genes (multiple problems)  :: 12 of 61
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Helicobacter pylori"
                     /mol_type="genomic DNA"
                     /strain="HpGP-TWN-021"
                     /isolation_source="Biopsy"
                     /host="Homo sapiens"
                     /db_xref="taxon:210"
                     /geo_loc_name="Taiwan"
                     /lat_lon="23.30 N 121.00 E"
                     /collected_by="Maria Camargo and Charles Rabkins"
     protein         /locus_tag="E5P95_00350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001169340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MQKIIDDSLE LAKKLQDSIS NHLSEQEKAF HSKMQKLLNN PENKVMLIEL MDRSFRCLDN
       61 KARFEMIEHV LDKYKSREIF SSFEKLLLMG FLSFGKMLPD MSVPFFVNKI RSDTKAMVLD
      121 QEESRLKERI LKRKNEKIIL NVNFIGEEVL GEKEASARFE KYSQALKSNY IQYISIKITT
      181 IFSQINILDF EYSKKEIVKR LDALYALALE EEKKQGMPKF INLDMEEFRD LELTVESFME
      241 SIAKFDLNAG IVLQAYIPDS YEYLKKLHAF SKERVLKGLK PIKIRFVKGA NMESEETIAS
      301 MKDWALPTFS NKQDTDSNYN KMLDFVLEGD NYKYIHIGAA SHNIFEIAYV YTRIHALNDP
      361 VVLEHFSFEM LEGMSLQASQ ELKEMHKLIL YAPVCDEAHF NNAIAYLVRR LDENTSSDNF
      421 MKAFFNLKVG TSEWKDQEQR FLNSLKGIAT LDNATHRTQD RNAKQNGHTT YPNHSFKNES
      481 DTDFILKANR EWAKKVREKM RNAPILELYP EMDGRFEDPN LTPLEVFDKI HHRKIASVHL
      541 ADKGAILKAL EVAKSDKSRF SQKSFTEIHA LMSQAAQLFR ERRGDLVGIS ALEVGKTFAE
      601 TDAEVSEAID FLEFYPYSLR VLQEQNKKTK FTPKGVGVVI APWNFPVGIS VGTIAAPLAA
      661 GNRVIYKPSS LSSVTGYKLC ECFWDAGVPR DALIYLPSKG SDISEHLLKD ESIKFAILTG
      721 GEDTAYKMLE ANPTLALSAE TGGKNATIVS KMADRDQAIK NVIHSAFSNS GQKCSATSLL
      781 VLEKEVYEDE NFKKTLIDAT LSLSVGDPFD FKNKIGALAD KPNEKVIKAI DELKSYENYE
      841 IPASFVNDNP YLMKPSIKYG TKKGDFTHQT ELFTPILSVM KAQDLDEAIE IVNSTGYGLT
      901 SALESLDERE WEYYLERIEA GNIYINKPTT GAIVLRQPFG GVKKSAVGFG RKVGIFNYIT
      961 QFVNIHQEEE DEHALKNPLS EALENLTQKG YDEHTHELKR AIFMAKSYAY HYKHEFSQAK
     1021 DYVKIRGEDN LFSYTKVKSV GYRITEKDTL SDMLGVALAC LISQIPLTLS IENERTNKDL
     1081 TFFLECLKVL RANTPIVYES LQKFSEKLHA FNRVRYLKSD LDLLHKQASA LGMVLATAKP
     1141 CLNGRFELLY YHLERSVSIS YHRYGNLGSR VLRQPTCHKS CCAEK
//