LOCUS       WQZ29894.1               953 aa    PRT              BCT 29-DEC-2023
DEFINITION  Helicobacter pylori RecB-like helicase protein.
ACCESSION   CP079244-1403
PROTEIN_ID  WQZ29894.1
SOURCE      Helicobacter pylori
  ORGANISM  Helicobacter pylori
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Helicobacteraceae; Helicobacter.
REFERENCE   1  (bases 1 to 1570870)
  AUTHORS   Thorell,K., Munoz-Ramirez,Z.Y., Wang,D., Sandoval-Motta,S., Boscolo
            Agostini,R., Ghirotto,S., Torres,R.C., Falush,D., Camargo,M.C. and
            Rabkin,C.S.
  CONSRTM   HpGP Research Network
  TITLE     The Helicobacter pylori Genome Project: insights into H. pylori
            population structure from analysis of a worldwide collection of
            complete genomes
  JOURNAL   Nat Commun 14 (1), 8184 (2023)
   PUBMED   38081806
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1570870)
  AUTHORS   Camargo,M.C. and Rabkin,C.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUL-2021) IIB, National Cancer Institute, 9609
            Medical Center Dr., Rm. 6E110, Bethesda, MD 20892, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: HGAP v. 4
            Assembly Name          :: HpGP-TWN-021
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 2661x
            Sequencing Technology  :: PacBio Sequel II
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 07/16/2021 08:12:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 5.2
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,497
            CDSs (total)                      :: 1,452
            Genes (coding)                    :: 1,391
            CDSs (with protein)               :: 1,391
            Genes (RNA)                       :: 45
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 44 of 61
            Pseudo Genes (incomplete)         :: 11 of 61
            Pseudo Genes (internal stop)      :: 18 of 61
            Pseudo Genes (multiple problems)  :: 12 of 61
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Helicobacter pylori"
                     /mol_type="genomic DNA"
                     /strain="HpGP-TWN-021"
                     /isolation_source="Biopsy"
                     /host="Homo sapiens"
                     /db_xref="taxon:210"
                     /geo_loc_name="Taiwan"
                     /lat_lon="23.30 N 121.00 E"
                     /collected_by="Maria Camargo and Charles Rabkins"
     protein         /locus_tag="E5P95_07240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014662451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MDTKRQCMAL KASAGSGKTF ALSVRFLALL FKGANPSEIL TLTFTKKATA EMKERILDYL
       61 RILQKENLED EKEKEKSQNI LKELEEKYRL DPSFVQNSAQ KIYQRFLNAE IRISTIDAFF
      121 QSILRKFCWF VGLSANFEVN EDTKVHQQQL NESFLSALNN EQLEELSVFI AQCLSYDSYT
      181 SDSILGRLRF LKNKLYLFDP NKKDPVFDEE GFLEKLRNLN QQIQSVETAS NEAKKAIKYD
      241 DFKGFLNSSL TWLKKKGEYR YFKKFKDEIP TLESECEEIE NDLKRYYEAR ESALFKKFPK
      301 FIQLYDKATS KIQALDFDAI KDKVHALLNG YEEMPAEFFY FRLDSRIAHI LIDEFQDTSL
      361 NDYKILAPFI DEIKAGIGQA KWHRSVFFVG DVKQSIYGFR GSFSSLFESV SKDFYHDNLP
      421 FNHRSSPLII NYVNTIFKKA YQNSSTAYLE QKYPKASSNK HARDGYVKVS LVANERELLL
      481 EQILQEAKNL LEHRIEPKDI TLLCTTNDDA LEIKNYLQEN LSAIRPSTES SAKLSQFVES
      541 KIIKNALEYA LAEEPYKPFY KHSVLKLAGY LHDDAIALPG FNPKKESVAG FVWKAMELFE
      601 LYTECAQICL ELAVGCEDAN EFLEKLEAKE IASFNVKGAQ IMTIHKSKGM QFPYVIVCER
      661 LGKPKSNNSN QFLEEYNGTE LLRLYYRMKN REVVDKDYAR ALDKEEAAKD LEETNVYYVA
      721 FTRAELGLIV VAKDKDQKKD KKESKKESKN KGMREKLDLA PLEEGTIVPV ISSQKEPLIP
      781 SVLIKPHAYG EQVQEIEEEP SDYEKNNDQE AINFGIALHK GLEYQYAYNI PKKSVLEYLN
      841 YHHGFYGLDY QALEESLELF ENDAKIQALF KNYALRGEAA FLFEGVVSRI DVLLWDKGQN
      901 LYVLDYKSSQ NYQQSHKVQV SHYAAFLKTQ APHFKIQAGI IYAHKRLLEK LWV
//