LOCUS       WQZ29861.1               971 aa    PRT              BCT 29-DEC-2023
DEFINITION  Helicobacter pylori type III restriction-modification
            system endonuclease protein.
ACCESSION   CP079244-1366
PROTEIN_ID  WQZ29861.1
SOURCE      Helicobacter pylori
  ORGANISM  Helicobacter pylori
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Helicobacteraceae; Helicobacter.
REFERENCE   1  (bases 1 to 1570870)
  AUTHORS   Thorell,K., Munoz-Ramirez,Z.Y., Wang,D., Sandoval-Motta,S., Boscolo
            Agostini,R., Ghirotto,S., Torres,R.C., Falush,D., Camargo,M.C. and
            Rabkin,C.S.
  CONSRTM   HpGP Research Network
  TITLE     The Helicobacter pylori Genome Project: insights into H. pylori
            population structure from analysis of a worldwide collection of
            complete genomes
  JOURNAL   Nat Commun 14 (1), 8184 (2023)
   PUBMED   38081806
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1570870)
  AUTHORS   Camargo,M.C. and Rabkin,C.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUL-2021) IIB, National Cancer Institute, 9609
            Medical Center Dr., Rm. 6E110, Bethesda, MD 20892, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: HGAP v. 4
            Assembly Name          :: HpGP-TWN-021
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 2661x
            Sequencing Technology  :: PacBio Sequel II
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 07/16/2021 08:12:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 5.2
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,497
            CDSs (total)                      :: 1,452
            Genes (coding)                    :: 1,391
            CDSs (with protein)               :: 1,391
            Genes (RNA)                       :: 45
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 44 of 61
            Pseudo Genes (incomplete)         :: 11 of 61
            Pseudo Genes (internal stop)      :: 18 of 61
            Pseudo Genes (multiple problems)  :: 12 of 61
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Helicobacter pylori"
                     /mol_type="genomic DNA"
                     /strain="HpGP-TWN-021"
                     /isolation_source="Biopsy"
                     /host="Homo sapiens"
                     /db_xref="taxon:210"
                     /geo_loc_name="Taiwan"
                     /lat_lon="23.30 N 121.00 E"
                     /collected_by="Maria Camargo and Charles Rabkins"
     protein         /locus_tag="E5P95_07050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017284334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MKIKFKRLDY QEKCLNQILG VFKGIYLREP ENDAQRISNP VFEIGEIKDL LLENIQNLRS
       61 EQKITWGSVG IDKSLNCDIL METGTGKTFC FLECVYALHQ NYHLSKFIVL VPSNAIKLGV
      121 LKSIEITREF FKSEYSTHLE SYEDIRSFIL ASNHKCCVLV MTFSAFNKEG NVINKSCLEN
      181 TNLFNGAKSY MQALASISPV VIMDEPHRFL GDKTKKYLEQ LNALITLRFG ATFKDDYKNL
      241 IYALDSKKAF DCALVKSISV ASVGESQEYF LELKGVVKIQ NDYEAAINYT NLENKTQSVK
      301 VKKHDNLGTL TQISALEDYI VENITKNEVR FLNGFNLLLD QKEPFSHLLE GEQEVMLKEA
      361 IKSHFEREEG LFKKGIKALC MVFISGVNSY LSENEKPAKL ALLFEKLYHQ KLEEVLKKDD
      421 LDENYRAYLE RTKDNIQKVH GGYFAKSKKE SDEAQVIALI LKEKEKLLSF ESDLRFIFSQ
      481 WALQEGWDNP NVMTICKLAP SHSNITKLQQ IGRGLRLAVN DKGERITKEH ADFDFVNELV
      541 VIVPQVEGDF VGAIQQEISE HSLIKQIFSG EELEKSGIVK KGYYGALLET LESLGFGEKT
      601 DDENFKLTLN QNEFLEKEPE LEKLKDKKYL NFEKLKDFLK NRLVGHFRVR NKNERKSEKI
      661 KINKENFKKF ETLWEGLNHQ ARIAYAIDSE SLIDEIVKKI DSSFNVKSKI VSVTTHKKVE
      721 TMGNDAKTEI FERESACVWS LHEFISALSN KVKLSFKSVA KVLGNIDENK FDLIKKNEQE
      781 SLRRLEELFL EIIYQNIKDK ISYQMRETII KNRKNDAFYD EKGEIREFLD GSLGVDKYEI
      841 KNSSAQEKCL YENFMQVDSE IEKDTIEESN DTKIIVFGKL PRVKIPIGLN QTYSPDFGYV
      901 VENNDKKVLL VVETKGVENE NELREEEKRK ISTAKKFFEA LKKQGVNIEY KTKMEKDQLS
      961 VLINEVLNRK D
//