LOCUS       WQZ29860.1              1184 aa    PRT              BCT 29-DEC-2023
DEFINITION  Helicobacter pylori Eco57I restriction-modification methylase
            domain-containing protein protein.
ACCESSION   CP079244-1365
PROTEIN_ID  WQZ29860.1
SOURCE      Helicobacter pylori
  ORGANISM  Helicobacter pylori
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Helicobacteraceae; Helicobacter.
REFERENCE   1  (bases 1 to 1570870)
  AUTHORS   Thorell,K., Munoz-Ramirez,Z.Y., Wang,D., Sandoval-Motta,S., Boscolo
            Agostini,R., Ghirotto,S., Torres,R.C., Falush,D., Camargo,M.C. and
            Rabkin,C.S.
  CONSRTM   HpGP Research Network
  TITLE     The Helicobacter pylori Genome Project: insights into H. pylori
            population structure from analysis of a worldwide collection of
            complete genomes
  JOURNAL   Nat Commun 14 (1), 8184 (2023)
   PUBMED   38081806
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1570870)
  AUTHORS   Camargo,M.C. and Rabkin,C.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUL-2021) IIB, National Cancer Institute, 9609
            Medical Center Dr., Rm. 6E110, Bethesda, MD 20892, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: HGAP v. 4
            Assembly Name          :: HpGP-TWN-021
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 2661x
            Sequencing Technology  :: PacBio Sequel II
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 07/16/2021 08:12:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 5.2
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,497
            CDSs (total)                      :: 1,452
            Genes (coding)                    :: 1,391
            CDSs (with protein)               :: 1,391
            Genes (RNA)                       :: 45
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 44 of 61
            Pseudo Genes (incomplete)         :: 11 of 61
            Pseudo Genes (internal stop)      :: 18 of 61
            Pseudo Genes (multiple problems)  :: 12 of 61
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Helicobacter pylori"
                     /mol_type="genomic DNA"
                     /strain="HpGP-TWN-021"
                     /isolation_source="Biopsy"
                     /host="Homo sapiens"
                     /db_xref="taxon:210"
                     /geo_loc_name="Taiwan"
                     /lat_lon="23.30 N 121.00 E"
                     /collected_by="Maria Camargo and Charles Rabkins"
     protein         /locus_tag="E5P95_07045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001950103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MIKFARIPLK DFIKKYNPQE PKKETIENFE KEINSLLENA KRQDGEEFQK NEINSFLKNT
       61 YGYKCNTYEK VDSAIYVDGK AWVLIEAKAL NNRNEFPKDR ENPISKAFCQ MVFYFLKEIK
      121 NNNSLKHAII CNAHEFFLFD CKDLLFLEED KRITDFHKDC AKKEGTDHST KRFYSDLEEY
      181 LKKDFKGELR YTHFNLSSDD PKELPLIYQV LSHEVLLKQK KTLDANTLNK DFYEELLYIL
      241 GLEEQNEKGK ILIKPSRTKN SLSDALKKKY KNLDDEEVMA LLIAWNNRIL FLRLLESLLI
      301 SFEHFEKPFL TTENFKDFNA LNTLFFEVLA KKNNERLSEI KEDKILEKIP YLNSSLFDKT
      361 PLELKGHEIK FLDNKPLKIY PKSVLKKDKD YQEKKDFSLL EYLFTFLHVY DFTTTPKDIK
      421 DNQNKSESRL INPSVLGLVF EKLNGYKEGS FYTPSFITSY MCKESITPIV LDKFNQKYNI
      481 ECEDLKELKN YLKNTSYKED KRKEYLQVLL ALRVCDPAVG SGHFLVSALN EMVRIVYKLG
      541 LIASLYRHSL RLENDEIIIQ HTQTGEIFNY KKPHSENDPH HQIQKELFEL KKSIIENCLF
      601 GVDINPNSCE ITKLRLWIEL LKYSYYIFEE GKNTNALETL PNIDINIKCG NSLISRFSLH
      661 DDLKKIPNIK KKIQEYKDLV AQYKDPNPLF PLNKTDLTNK IQDLKTTFSL ELKDPKTKAE
      721 LEKAIEKHIK KYNFFALDDK SLLDGLNYFI PSLFGALKLS PKEEEEAFAS YGRIRALRKK
      781 LDDALSGREY QNAFEWRFEF PEVLDDEGDF LGFDCIIGNP PYIDYRKIDE KTKIFLSKFS
      841 SVYKKSKEGS IFVYFIERAS QLIIKHGEIS FINPIAYLCK PTDHGIRDYI DKNLKITMLI
      901 DLSNIKIFES ASTYTCINIF KRENKKNEIL FQRSDDLTEL SSNKDDFLKI PSVNIEHISI
      961 FLDPISRHIA ERCKTQLGNF CKIFCGLSKT GFRLDVINTN SEKSVYFLES SDIYRYYVND
     1021 FGKKFLKRID DYFSYEKRQI FESQDIIFMT RMTNQIRCVI VPLGVYGGKV NILHDFRIDR
     1081 FLILGILNSK LMTYFYKKKF FPTHMQGGAF GFDTLSVETL PIPQITKSNQ PTAHKITDCA
     1141 KAILEAKEKD PKANTQKLEK EIDALVYQLY NLTDEEIKII EEGQ
//