LOCUS       WQZ29855.1               863 aa    PRT              BCT 29-DEC-2023
DEFINITION  Helicobacter pylori TonB-dependent receptor protein.
ACCESSION   CP079244-1359
PROTEIN_ID  WQZ29855.1
SOURCE      Helicobacter pylori
  ORGANISM  Helicobacter pylori
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Helicobacteraceae; Helicobacter.
REFERENCE   1  (bases 1 to 1570870)
  AUTHORS   Thorell,K., Munoz-Ramirez,Z.Y., Wang,D., Sandoval-Motta,S., Boscolo
            Agostini,R., Ghirotto,S., Torres,R.C., Falush,D., Camargo,M.C. and
            Rabkin,C.S.
  CONSRTM   HpGP Research Network
  TITLE     The Helicobacter pylori Genome Project: insights into H. pylori
            population structure from analysis of a worldwide collection of
            complete genomes
  JOURNAL   Nat Commun 14 (1), 8184 (2023)
   PUBMED   38081806
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1570870)
  AUTHORS   Camargo,M.C. and Rabkin,C.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUL-2021) IIB, National Cancer Institute, 9609
            Medical Center Dr., Rm. 6E110, Bethesda, MD 20892, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: HGAP v. 4
            Assembly Name          :: HpGP-TWN-021
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 2661x
            Sequencing Technology  :: PacBio Sequel II
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 07/16/2021 08:12:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 5.2
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,497
            CDSs (total)                      :: 1,452
            Genes (coding)                    :: 1,391
            CDSs (with protein)               :: 1,391
            Genes (RNA)                       :: 45
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 44 of 61
            Pseudo Genes (incomplete)         :: 11 of 61
            Pseudo Genes (internal stop)      :: 18 of 61
            Pseudo Genes (multiple problems)  :: 12 of 61
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Helicobacter pylori"
                     /mol_type="genomic DNA"
                     /strain="HpGP-TWN-021"
                     /isolation_source="Biopsy"
                     /host="Homo sapiens"
                     /db_xref="taxon:210"
                     /geo_loc_name="Taiwan"
                     /lat_lon="23.30 N 121.00 E"
                     /collected_by="Maria Camargo and Charles Rabkins"
     protein         /locus_tag="E5P95_07015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001945120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MLRNKFRIVF VSCIVASSLQ AQEKTHTLGK VTTKGERTFE YNNKMYIDRK ELQQRQSNQI
       61 RDIFRTRADV NVASGGLMAQ KIYVRGIESR LLRVTIDGVA QNGNIFHHDA NTVIDPNMIK
      121 EVEVIKGAAN ASAGPGAVAG KLSFTTIDAN DFLRKNQTYG AKAEAGFYTN FGYRMNATAA
      181 YRGKNWDILA YYNHQNIFYY RDGNNAFRNL FHPNYDLQDP SNSDMSVGTP SEVNSVLAKI
      241 NGYINETDSI SVSYNLTRDN STRLLRPNTT SALSKANDPG SQPAPFVIDF GKELAHTINF
      301 NHNLSLKYKH EGGPNFNQPR VESTAFLGVR GGNYNPVVNP FAYNSNEPAN PDYIPEVREW
      361 CNNPDNISQC TQGAIRPSNG GYQIGYGQPG AINWQGASAI STGSNIYHGL VPKNPDYDMT
      421 PPNAQNPSAN DWTLGNADAE GTLARRIFLI NSGVNFKVTH PISEDYGNVF EYGMIYQNLS
      481 VFSGLDKGKN GYYKNNIDPN DPNGSGLPYR HYYTDQSSQY PQNLNAPNPL YRNMPQNSHA
      541 IGNIIGGFMQ ANYNILSNVI VGAGTRYDIY TLLDKNGRTH VTSGFSPSAT VLYNPIESIG
      601 LKVSYAYVTK GALPGDGVLM RDPTVIYQRN LRPSIGQNVE FNVDYNSKYF NVRGAAFYQV
      661 INNFINSYGQ DTSKNGGGNA TAKNMSGNLP ETINIYGYEV SGNVRYKNFL GTFSVARSWP
      721 TARGHLLADT YALAATTGNV FILKADYDVR RWGLTLTWLS RFVTNMYYEG YSIYYPQYGL
      781 IKIHKPGYGV HNVFINWTPP SKKWQGLRIS AVFNNILNKQ YVDQTSVFQA SADAPASDMI
      841 PKGKRMALPA PGFNARFEVS YQF
//