LOCUS       WQZ29823.1               846 aa    PRT              BCT 29-DEC-2023
DEFINITION  Helicobacter pylori tetratricopeptide repeat protein protein.
ACCESSION   CP079244-1327
PROTEIN_ID  WQZ29823.1
SOURCE      Helicobacter pylori
  ORGANISM  Helicobacter pylori
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Helicobacteraceae; Helicobacter.
REFERENCE   1  (bases 1 to 1570870)
  AUTHORS   Thorell,K., Munoz-Ramirez,Z.Y., Wang,D., Sandoval-Motta,S., Boscolo
            Agostini,R., Ghirotto,S., Torres,R.C., Falush,D., Camargo,M.C. and
            Rabkin,C.S.
  CONSRTM   HpGP Research Network
  TITLE     The Helicobacter pylori Genome Project: insights into H. pylori
            population structure from analysis of a worldwide collection of
            complete genomes
  JOURNAL   Nat Commun 14 (1), 8184 (2023)
   PUBMED   38081806
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1570870)
  AUTHORS   Camargo,M.C. and Rabkin,C.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUL-2021) IIB, National Cancer Institute, 9609
            Medical Center Dr., Rm. 6E110, Bethesda, MD 20892, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: HGAP v. 4
            Assembly Name          :: HpGP-TWN-021
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 2661x
            Sequencing Technology  :: PacBio Sequel II
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 07/16/2021 08:12:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 5.2
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,497
            CDSs (total)                      :: 1,452
            Genes (coding)                    :: 1,391
            CDSs (with protein)               :: 1,391
            Genes (RNA)                       :: 45
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 44 of 61
            Pseudo Genes (incomplete)         :: 11 of 61
            Pseudo Genes (internal stop)      :: 18 of 61
            Pseudo Genes (multiple problems)  :: 12 of 61
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Helicobacter pylori"
                     /mol_type="genomic DNA"
                     /strain="HpGP-TWN-021"
                     /isolation_source="Biopsy"
                     /host="Homo sapiens"
                     /db_xref="taxon:210"
                     /geo_loc_name="Taiwan"
                     /lat_lon="23.30 N 121.00 E"
                     /collected_by="Maria Camargo and Charles Rabkins"
     protein         /locus_tag="E5P95_06855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017283114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MLNEEQNSKG LEEKGGENRN EKEAPLKGIH SKIPSFKQAL EQTLNKIKSS KEFFKQFLHN
       61 KKKLYIALGI LLLLIALIVA LSLLLGHKKE SQPTSLQTNS TTTNNETPND TNNANNTETE
      121 GQIENLDLPN LIGKDSFKQS DENQVDAMMK KASLLYEQGQ KDEALHLFDK AASFSQGIAS
      181 HNLGVIKFKE KDFNGALDLF DSSIASKENA SVSAIDALVS AYHLQDADLY YHYLKIVRDT
      241 LYKDYKKSFY SYAYALKSYY AGEYFEALSP LMHPNSNAFL KPNARLASKL FLMFKDETNA
      301 YKQLQKSANA QDELALGLLQ ARLGHYKQAL EHLQRYLHNY PKDLNALMAL ELVSLKKGDT
      361 LKASEALKLA SHTPEDTLLA NSFYPIKPTI NPVFLDKERA KERFWNTQYF EGKRDFIYRL
      421 LFYYAPFKVL DSKETLGVIE EGLFLLDSDA QKDLEGASLA FKRGRLMAIA DKNALKGLKA
      481 LENKRLKKAL SFFDLSLKNS PNNALLHYNT GLIYAQLENY HKAYFHFLRA FHLNSADYLS
      541 AIFAILASHF THEDTTEFLR EITENFYSQD FSSPTQKALL SSLIAYLNYR TNWDMDWLKN
      601 APKKIPFYYA LEAVFAKESK DKKLMVQSFG NLKKMLPKDL ISNIFYEIVS YYDASIRHTL
      661 SIYTLLDSHK ISWDQTMQGP ILGRHFYTYM GFIVNDLDHQ EKLLEQKIAS LEEREAPNDW
      721 LENLALVSLF QGQYEKASAL YQNLISDLKD NEVHLKILAG LTYIAQKNYN NAALWLELGK
      781 LDDPNNENIR YALGLLYQRK GDLKSALNHF LAIKTSDFSS PYFDFEIDTD LVKERLNQEK
      841 KGEFLE
//