LOCUS       WQZ29812.1               893 aa    PRT              BCT 29-DEC-2023
DEFINITION  Helicobacter pylori DNA polymerase I protein.
ACCESSION   CP079244-1316
PROTEIN_ID  WQZ29812.1
SOURCE      Helicobacter pylori
  ORGANISM  Helicobacter pylori
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Helicobacteraceae; Helicobacter.
REFERENCE   1  (bases 1 to 1570870)
  AUTHORS   Thorell,K., Munoz-Ramirez,Z.Y., Wang,D., Sandoval-Motta,S., Boscolo
            Agostini,R., Ghirotto,S., Torres,R.C., Falush,D., Camargo,M.C. and
            Rabkin,C.S.
  CONSRTM   HpGP Research Network
  TITLE     The Helicobacter pylori Genome Project: insights into H. pylori
            population structure from analysis of a worldwide collection of
            complete genomes
  JOURNAL   Nat Commun 14 (1), 8184 (2023)
   PUBMED   38081806
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1570870)
  AUTHORS   Camargo,M.C. and Rabkin,C.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUL-2021) IIB, National Cancer Institute, 9609
            Medical Center Dr., Rm. 6E110, Bethesda, MD 20892, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: HGAP v. 4
            Assembly Name          :: HpGP-TWN-021
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 2661x
            Sequencing Technology  :: PacBio Sequel II
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 07/16/2021 08:12:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 5.2
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,497
            CDSs (total)                      :: 1,452
            Genes (coding)                    :: 1,391
            CDSs (with protein)               :: 1,391
            Genes (RNA)                       :: 45
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 44 of 61
            Pseudo Genes (incomplete)         :: 11 of 61
            Pseudo Genes (internal stop)      :: 18 of 61
            Pseudo Genes (multiple problems)  :: 12 of 61
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Helicobacter pylori"
                     /mol_type="genomic DNA"
                     /strain="HpGP-TWN-021"
                     /isolation_source="Biopsy"
                     /host="Homo sapiens"
                     /db_xref="taxon:210"
                     /geo_loc_name="Taiwan"
                     /lat_lon="23.30 N 121.00 E"
                     /collected_by="Maria Camargo and Charles Rabkins"
     protein         /gene="polA"
                     /locus_tag="E5P95_06800"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017281028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MEEPVIKEGT LALIDTFAYL FRSYYMSAKN KPLTNDKGFP TGLLTGLVGM VKKFYKDRKN
       61 MPFIVFALES QTKTKRAEKL GEYKQNRKDA PKEMLLQIPI ALEWLQKMGF TCVEVSGFEA
      121 DDVIASLATL SPYKTRIYSK DKDFNQLLSD KIALFDGKTE FLAKDCVEKY GILPSQFTDY
      181 QGIVGDSSDN YKGVKGIGSK NAKELLQRLG SLEKIYENLD LAKNLLSPKM YQALIQDKES
      241 AFLSKELATL ERGCIKEFDF SSCAFPSENP LLKIKDELKE YGFISTLRDL ENSPTPLVLD
      301 NTPLSDNTPA SDNAPKKSRM IVLENTAPLS AFLEKLKKTN ARIFMRLALD KEKKVLALAF
      361 LYEDQGYFLP LEEALFSPFS LEFLQNAFFK MLQHVQIIGH DLKPLLSFLK AKYQVSLEDI
      421 RIQDTQILAF LKNPEKVGFD EVLKQYLKEE LIPHEKIKDF KTKSKAEKLE QLDMELNALK
      481 RLCEYFEKGG LEEGLLALAR EVETPFVKVL IGMEFQGFKI DAPYFKRLEQ EFKNELHVLE
      541 RQILDLIGVD FNLNSPKQLS EILYEKLELP KNKSHSTDEK SLLKILDKHP SIALILEYRE
      601 LNKLFNTYTT PLLRLKDKDD KIHTTFIQTG TATGRLSSHS PNLQNIPVRS PKGLLIRKGF
      661 IASSKEYCLL GVDYSQIELR LLAHFSQDKD LMDAFLKGRD IHLETSKALF GEDLAKEKRS
      721 IAKSINFGLV YGMGSKKLSE TLNIPLNEAK SYIEAYFKRF PSIKDYLNRM KEEILKTSKA
      781 FTLLGRYRVF DFTGANDYIK GNYLREGVNA IFQGSASDLL KLGMLKVSER FKNNPSVRLL
      841 LQVHDELIFE IEEKNALELQ QEIQRILNDE VYPLRVPLET SAFMAKRWNE LKG
//