LOCUS       WQZ29673.1               612 aa    PRT              BCT 29-DEC-2023
DEFINITION  Helicobacter pylori NADH-quinone oxidoreductase subunit L protein.
ACCESSION   CP079244-1165
PROTEIN_ID  WQZ29673.1
SOURCE      Helicobacter pylori
  ORGANISM  Helicobacter pylori
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Helicobacteraceae; Helicobacter.
REFERENCE   1  (bases 1 to 1570870)
  AUTHORS   Thorell,K., Munoz-Ramirez,Z.Y., Wang,D., Sandoval-Motta,S., Boscolo
            Agostini,R., Ghirotto,S., Torres,R.C., Falush,D., Camargo,M.C. and
            Rabkin,C.S.
  CONSRTM   HpGP Research Network
  TITLE     The Helicobacter pylori Genome Project: insights into H. pylori
            population structure from analysis of a worldwide collection of
            complete genomes
  JOURNAL   Nat Commun 14 (1), 8184 (2023)
   PUBMED   38081806
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1570870)
  AUTHORS   Camargo,M.C. and Rabkin,C.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUL-2021) IIB, National Cancer Institute, 9609
            Medical Center Dr., Rm. 6E110, Bethesda, MD 20892, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: HGAP v. 4
            Assembly Name          :: HpGP-TWN-021
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 2661x
            Sequencing Technology  :: PacBio Sequel II
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 07/16/2021 08:12:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 5.2
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,497
            CDSs (total)                      :: 1,452
            Genes (coding)                    :: 1,391
            CDSs (with protein)               :: 1,391
            Genes (RNA)                       :: 45
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 44 of 61
            Pseudo Genes (incomplete)         :: 11 of 61
            Pseudo Genes (internal stop)      :: 18 of 61
            Pseudo Genes (multiple problems)  :: 12 of 61
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Helicobacter pylori"
                     /mol_type="genomic DNA"
                     /strain="HpGP-TWN-021"
                     /isolation_source="Biopsy"
                     /host="Homo sapiens"
                     /db_xref="taxon:210"
                     /geo_loc_name="Taiwan"
                     /lat_lon="23.30 N 121.00 E"
                     /collected_by="Maria Camargo and Charles Rabkins"
     protein         /gene="nuoL"
                     /locus_tag="E5P95_06030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003017077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MQYSSLLSVV LFLPLIGAIY AGLFGAKAKA LHVGVFNSLC VLVSFIGAVV LFIQAWHHQS
       61 YEKYLFDWIV VGNFKVGFSL MLDNINAVMI VVVTLVSFLV HVYSIGYMEH DKGFNRYFSY
      121 LSGFVFSMLV LVLSDNFLGL FIGWEGVGLC SYLLIGFWYH KTSANNASIE AFVMNRITDL
      181 GMLMGIILIF WNFGTLQYKE VFSMLNNTDY PMLFYISVFL FIGAMGKSAQ FPMHTWLANA
      241 MEGPTPVSAL IHAATMVTAG VYLVIRANPL YSAVFEVGYF IACLGAFVAL FGASMALVNK
      301 DLKRIVAYST LSQLGYMFVA AGLGAYAIAL FHLFTHAFFK SLLFLGSGNV MHAMEDNLDI
      361 TKMGALYKPM RITAVFMIIG SVALCGIYPF AGYFSKDKIL EVAFGMHHHI LWFVLLIGVI
      421 FTAFYSFRLI MLVFFAPKQH AINHPHEAQN FMLLSMLPLG VLAVIAGFFE EPFFHFISQV
      481 IPSVEEYPIP LALLISITTI VVLLSIAYAI FKYKNGITSK KEGGFLYKLL LNQYYIPQLY
      541 QGIAKVFSAI ASFLHQVVEL KIIDAIVDAI GRSVFVIGRV FRISQDGNLT SMLRFMVAGV
      601 LILLAFVAFF GR
//