LOCUS       WQZ29627.1               946 aa    PRT              BCT 29-DEC-2023
DEFINITION  Helicobacter pylori FAD-binding oxidoreductase protein.
ACCESSION   CP079244-1116
PROTEIN_ID  WQZ29627.1
SOURCE      Helicobacter pylori
  ORGANISM  Helicobacter pylori
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Helicobacteraceae; Helicobacter.
REFERENCE   1  (bases 1 to 1570870)
  AUTHORS   Thorell,K., Munoz-Ramirez,Z.Y., Wang,D., Sandoval-Motta,S., Boscolo
            Agostini,R., Ghirotto,S., Torres,R.C., Falush,D., Camargo,M.C. and
            Rabkin,C.S.
  CONSRTM   HpGP Research Network
  TITLE     The Helicobacter pylori Genome Project: insights into H. pylori
            population structure from analysis of a worldwide collection of
            complete genomes
  JOURNAL   Nat Commun 14 (1), 8184 (2023)
   PUBMED   38081806
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1570870)
  AUTHORS   Camargo,M.C. and Rabkin,C.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUL-2021) IIB, National Cancer Institute, 9609
            Medical Center Dr., Rm. 6E110, Bethesda, MD 20892, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: HGAP v. 4
            Assembly Name          :: HpGP-TWN-021
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 2661x
            Sequencing Technology  :: PacBio Sequel II
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 07/16/2021 08:12:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 5.2
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,497
            CDSs (total)                      :: 1,452
            Genes (coding)                    :: 1,391
            CDSs (with protein)               :: 1,391
            Genes (RNA)                       :: 45
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 44 of 61
            Pseudo Genes (incomplete)         :: 11 of 61
            Pseudo Genes (internal stop)      :: 18 of 61
            Pseudo Genes (multiple problems)  :: 12 of 61
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Helicobacter pylori"
                     /mol_type="genomic DNA"
                     /strain="HpGP-TWN-021"
                     /isolation_source="Biopsy"
                     /host="Homo sapiens"
                     /db_xref="taxon:210"
                     /geo_loc_name="Taiwan"
                     /lat_lon="23.30 N 121.00 E"
                     /collected_by="Maria Camargo and Charles Rabkins"
     protein         /locus_tag="E5P95_05785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000392313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MQENYDAFFT EASGFLNERV FKDYLRRLAY GIDASCYRYI PKIVAWVKDE EEVQKLCVLA
       61 KKHGVSLTFR AAGSSLSGQA SCDGVLVMAT HFFKDAKILD NATSIQLSCG VIGSNANALL
      121 KPYHKKIGPD PSTINTAMIG GIVANNASGM CCGVEQNSYK TLKSLRVILA DGTLLDTADH
      181 KSVESFKNAR KDLIEGVLNL RKEILEDKEL HALIKKKYEI KNTTGYSLNA LIDFEDPIEM
      241 ISHLFIGSEG TLGFISSVEL ECVKDYAYKT CALLFYENLE QCARAAQILA ALKAKQPEMI
      301 SSAELMDYAC LKSVKGLEGM PRVILEIKEP NACLLIQSES DDPLILENNM QTILNALNAI
      361 PVVLDSQISS DPSIYQSWWK IRKGIFPIAA SQRKSQSSVI IEDVCFSQEN FVEGAKAIEG
      421 LLKKHGFKDN SIIFGHALSG NLHFVVTPIL ENETERKAFE NLVSDMFSMV SKSSGSIKAE
      481 HGTGRMVAPF VEMEWGEKAY KIHKQIKELF DPNGILNPDV IITNDKEIHT KNLKSIHPIE
      541 EHLDMCMECG FCERVCPSKD LSLTPRQRIV IHREIERLKE RVSHGHNEDQ VLLDELLKES
      601 EYLAHATCAV CHMCSMLCPL GIDTGKIALN HYQKNPKGEK IASKILNNMQ TTTSVARFSL
      661 KSARLVQNLI GSHNLVSLTK GIKKFIKPFP KAFNYMPKNN AYPLENKTLK SEEKVIYFST
      721 CINRSFAPST KMADKRCIQE VFESLCQKAK VSVMYPDGLN ALCCGKAFIN YTDLTKQNNE
      781 KNHEIFLQLS DNGKIPIVLD HSACSTHFFK QMKAYKDLKV YDLSVYIEEV LSPKLKFNPI
      841 NEDIGLYTMC ALKLENKEEL LFNLAKKCTL GEIVIHKETG CCGFAGNKGF FTPELNESAL
      901 NGFQAFYQSY DLKRGFSTSS TCEIGLSEKT HFSWQHIAYL VDACTL
//